Wall clock time and date at job start Mon Mar 30 2020 01:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47355 * 240.00001 * 2 1 3 5 5 N 1.46899 * 109.47337 * 184.99516 * 4 2 1 6 6 N 1.46504 * 109.47383 * 119.99719 * 2 1 3 7 7 C 1.34776 * 120.00057 * 275.00462 * 6 2 1 8 8 O 1.21582 * 119.99827 * 4.96546 * 7 6 2 9 9 N 1.34775 * 119.99758 * 184.96949 * 7 6 2 10 10 C 1.47085 * 120.88220 * 354.79912 * 9 7 6 11 11 C 1.53240 * 108.51807 * 231.16207 * 10 9 7 12 12 N 1.46893 * 109.34110 * 306.17179 * 11 10 9 13 13 C 1.46904 * 111.00050 * 187.25679 * 12 11 10 14 14 C 1.50700 * 109.47522 * 170.00099 * 13 12 11 15 15 H 1.08006 * 119.99558 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00016 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00197 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99863 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47423 * 89.99994 * 18 16 14 20 20 H 1.48506 * 109.47405 * 210.00116 * 18 16 14 21 21 H 1.48504 * 109.47304 * 329.99652 * 18 16 14 22 22 C 1.46897 * 111.27283 * 63.10860 * 12 11 10 23 23 C 1.47084 * 120.87908 * 174.77500 * 9 7 6 24 24 H 1.09003 * 109.47147 * 299.99497 * 1 2 3 25 25 H 1.08992 * 109.47352 * 60.00485 * 1 2 3 26 26 H 1.09001 * 109.46624 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47202 * 305.00096 * 4 2 1 28 28 H 1.08998 * 109.47027 * 64.99573 * 4 2 1 29 29 H 1.00897 * 111.00202 * 179.97438 * 5 4 2 30 30 H 1.00900 * 111.00311 * 303.95822 * 5 4 2 31 31 H 0.96994 * 119.99690 * 95.00210 * 6 2 1 32 32 H 1.08996 * 109.62434 * 111.45401 * 10 9 7 33 33 H 1.08997 * 109.62703 * 350.86852 * 10 9 7 34 34 H 1.08999 * 109.49450 * 186.20765 * 11 10 9 35 35 H 1.09004 * 109.49371 * 66.13471 * 11 10 9 36 36 H 1.09000 * 109.46811 * 289.99908 * 13 12 11 37 37 H 1.09001 * 109.47246 * 49.99120 * 13 12 11 38 38 H 0.97002 * 120.00029 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.49471 * 56.85177 * 22 12 11 40 40 H 1.08997 * 109.49632 * 176.93996 * 22 12 11 41 41 H 1.08998 * 109.62553 * 9.13120 * 23 9 7 42 42 H 1.08998 * 109.62754 * 248.54628 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8265 -1.1904 6 7 2.0184 -0.6906 1.1962 7 6 2.1470 -0.0182 2.3572 8 8 1.7735 1.1362 2.4357 9 7 2.6899 -0.6254 3.4310 10 6 3.0439 -2.0525 3.3925 11 6 2.4225 -2.7411 4.6123 12 7 2.8317 -2.0323 5.8321 13 6 2.3997 -2.7591 7.0334 14 6 3.0402 -2.1434 8.2507 15 1 3.7024 -1.2970 8.1426 16 6 2.7809 -2.6606 9.5021 17 7 1.9742 -3.6909 9.6337 18 14 3.5755 -1.8978 11.0109 19 1 2.6972 -0.8259 11.5445 20 1 3.7696 -2.9415 12.0493 21 1 4.8917 -1.3196 10.6384 22 6 2.3269 -0.6528 5.8416 23 6 2.9445 0.1215 4.6722 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 1.6054 -1.7198 -1.2952 28 1 1.7516 -0.1583 -2.1369 29 1 3.8655 -1.2999 -2.0048 30 1 3.9280 0.0827 -1.0824 31 1 2.2491 -1.6316 1.1526 32 1 4.1279 -2.1617 3.4230 33 1 2.6532 -2.5022 2.4797 34 1 2.7649 -3.7749 4.6601 35 1 1.3360 -2.7211 4.5271 36 1 1.3151 -2.6991 7.1240 37 1 2.7003 -3.8038 6.9537 38 1 1.7915 -4.0545 10.5143 39 1 1.2418 -0.6618 5.7392 40 1 2.6002 -0.1719 6.7808 41 1 2.4881 1.1091 4.6053 42 1 4.0190 0.2212 4.8257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892061395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:28 Heat of formation + Delta-G solvation = -16.481721 kcal Electronic energy + Delta-G solvation = -21462.225352 eV Core-core repulsion = 18284.362333 eV Total energy + Delta-G solvation = -3177.863019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.180 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19710 -37.89497 -36.50978 -34.32480 -33.27472 -32.34765 -30.98009 -30.10958 -27.95292 -25.50210 -25.13125 -23.23612 -22.23930 -21.43094 -20.46839 -19.24521 -17.81243 -16.72408 -16.29441 -15.80302 -15.35582 -14.97304 -14.69585 -14.62210 -14.37446 -14.02624 -13.72478 -13.47246 -13.43729 -13.09400 -12.59108 -12.43049 -12.16217 -11.95421 -11.87486 -11.25389 -11.11017 -11.02877 -10.78238 -10.70198 -10.56050 -10.45309 -9.90165 -9.78233 -9.23475 -9.08921 -9.00114 -8.45485 -8.21798 -7.26997 -6.03526 -4.05086 2.84071 3.32523 3.38749 3.42899 3.43280 3.99863 4.22152 4.41882 4.55989 4.84216 4.89217 5.14440 5.20921 5.31164 5.32307 5.41241 5.44901 5.49613 5.54278 5.73139 5.82615 5.90130 6.02736 6.08683 6.11242 6.26694 6.49778 6.58901 6.62131 6.76346 6.80705 7.05272 7.20129 7.26767 7.32776 7.77950 8.05055 8.13781 8.19655 8.51737 8.82418 9.02375 9.59413 11.07364 Molecular weight = 270.18amu Principal moments of inertia in cm(-1) A = 0.040403 B = 0.003617 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.846844 B = 7739.542143 C = 7883.294740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.163 3.837 3 H 0.082 0.918 4 C 0.052 3.948 5 N -0.847 5.847 6 N -0.731 5.731 7 C 0.708 3.292 8 O -0.602 6.602 9 N -0.625 5.625 10 C 0.121 3.879 11 C 0.040 3.960 12 N -0.534 5.534 13 C 0.193 3.807 14 C -0.508 4.508 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.051 3.949 23 C 0.133 3.867 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.342 0.658 30 H 0.343 0.657 31 H 0.398 0.602 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.025 0.975 36 H -0.009 1.009 37 H 0.031 0.969 38 H 0.261 0.739 39 H 0.024 0.976 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 3.837 -21.502 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.056 3.944 3 H 0.100 0.900 4 C -0.079 4.079 5 N -0.377 5.377 6 N -0.389 5.389 7 C 0.410 3.590 8 O -0.482 6.482 9 N -0.362 5.362 10 C -0.003 4.003 11 C -0.089 4.089 12 N -0.259 5.259 13 C 0.068 3.932 14 C -0.547 4.547 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.078 4.078 23 C 0.010 3.990 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.235 0.765 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.043 0.957 36 H 0.008 0.992 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.438 4.145 -20.648 21.065 hybrid contribution -0.494 0.205 0.006 0.535 sum -0.056 4.351 -20.642 21.096 Atomic orbital electron populations 1.22185 0.95322 1.02159 1.02689 1.20727 0.93590 0.96820 0.83220 0.90018 1.22124 0.88969 1.00851 0.95967 1.58603 1.04975 1.26664 1.47454 1.45097 1.71722 1.13845 1.08218 1.15840 0.78365 0.84497 0.80340 1.90863 1.56535 1.16928 1.83890 1.47365 1.65189 1.10647 1.12968 1.21723 1.00609 0.80218 0.97703 1.22388 0.97136 0.98250 0.91155 1.62072 1.59737 1.01716 1.02419 1.19726 0.93920 0.93914 0.85592 1.21152 1.27607 1.15532 0.90374 0.91756 1.24991 0.95355 0.95097 0.99159 1.69960 1.36378 1.23887 1.23617 0.86494 0.79799 0.78779 0.82336 1.20731 1.21297 1.19705 1.22360 0.96252 0.90902 0.98321 1.21713 1.00586 0.95310 0.81383 0.91411 0.92004 0.92505 0.90494 0.94134 0.84584 0.84426 0.76539 0.90756 0.91204 0.90198 0.95672 0.99165 0.95088 0.92918 0.95825 0.88596 0.89425 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.48 37.16 0.35 -1.22 16 2 C 0.16 1.63 2.78 -67.93 -0.19 1.44 16 3 H 0.08 0.96 7.65 -51.93 -0.40 0.56 16 4 C 0.05 0.36 6.34 -3.82 -0.02 0.34 16 5 N -0.85 -5.93 9.35 -10.37 -0.10 -6.03 16 6 N -0.73 -8.79 4.71 -58.68 -0.28 -9.07 16 7 C 0.71 11.36 8.27 -86.92 -0.72 10.64 16 8 O -0.60 -11.63 15.47 5.29 0.08 -11.55 16 9 N -0.62 -9.98 3.01 -178.19 -0.54 -10.52 16 10 C 0.12 1.71 6.54 -3.60 -0.02 1.69 16 11 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 12 N -0.53 -11.30 4.62 -235.76 -1.09 -12.39 16 13 C 0.19 4.98 4.72 -4.97 -0.02 4.96 16 14 C -0.51 -14.09 8.41 -34.44 -0.29 -14.38 16 15 H 0.06 1.76 7.13 -52.48 -0.37 1.38 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 18 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.05 1.01 5.46 -3.70 -0.02 0.99 16 23 C 0.13 2.29 6.61 -3.60 -0.02 2.27 16 24 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.34 1.75 9.08 -39.29 -0.36 1.39 16 30 H 0.34 2.44 8.99 -39.29 -0.35 2.09 16 31 H 0.40 4.25 6.14 -40.82 -0.25 4.00 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.78 5.74 -51.93 -0.30 0.49 16 34 H 0.08 1.32 7.99 -51.93 -0.41 0.90 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 36 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 37 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 2.01 6.67 -51.93 -0.35 1.67 16 41 H 0.09 1.53 7.04 -51.93 -0.37 1.16 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -32.31 335.06 -9.16 -41.47 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.93 Total: 3.53 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -1.08 Total: 8.86 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -1.26 Total: -63.87 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.31 -9.16 -41.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892061395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.984 kcal (2) G-P(sol) polarization free energy of solvation -32.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds