Wall clock time and date at job start Mon Mar 30 2020 01:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.47171 * 2 1 4 4 C 1.46849 * 110.99729 * 65.79139 * 3 2 1 5 5 C 1.53037 * 109.52091 * 185.84020 * 4 3 2 6 6 C 1.53117 * 109.27707 * 300.81978 * 5 4 3 7 7 H 1.08995 * 109.52367 * 297.74569 * 6 5 4 8 8 N 1.46908 * 109.52152 * 177.62588 * 6 5 4 9 9 C 1.46894 * 110.99833 * 183.95386 * 8 6 5 10 10 C 1.46898 * 111.00141 * 59.99632 * 8 6 5 11 11 C 1.52996 * 109.47065 * 196.01433 * 10 8 6 12 12 H 1.09005 * 109.47395 * 53.86273 * 11 10 8 13 13 O 1.42903 * 109.47314 * 293.86273 * 11 10 8 14 14 C 1.50702 * 109.47254 * 173.86377 * 11 10 8 15 15 H 1.08003 * 119.99504 * 359.97438 * 14 11 10 16 16 C 1.37877 * 120.00366 * 180.02562 * 14 11 10 17 17 N 1.31517 * 119.99555 * 359.97438 * 16 14 11 18 18 Si 1.86792 * 120.00210 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47544 * 89.99318 * 18 16 14 20 20 H 1.48501 * 109.47187 * 209.99564 * 18 16 14 21 21 H 1.48498 * 109.47227 * 329.99302 * 18 16 14 22 22 C 1.53114 * 109.16243 * 57.65682 * 6 5 4 23 23 H 1.08996 * 109.50204 * 182.40509 * 22 6 5 24 24 C 1.52997 * 109.50405 * 62.28206 * 22 6 5 25 25 C 1.46846 * 110.99975 * 189.99949 * 3 2 1 26 26 H 1.08993 * 109.46803 * 59.99920 * 1 2 3 27 27 H 1.09001 * 109.46789 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46964 * 299.99747 * 1 2 3 29 29 H 1.08996 * 109.47166 * 240.00139 * 2 1 3 30 30 H 1.09007 * 109.47261 * 119.99940 * 2 1 3 31 31 H 1.09002 * 109.46350 * 305.85363 * 4 3 2 32 32 H 1.09003 * 109.46651 * 65.83266 * 4 3 2 33 33 H 1.09003 * 109.50368 * 60.75935 * 5 4 3 34 34 H 1.09007 * 109.50215 * 180.87587 * 5 4 3 35 35 H 1.09000 * 109.47457 * 55.21481 * 9 8 6 36 36 H 1.09007 * 109.47038 * 175.20715 * 9 8 6 37 37 H 1.09000 * 109.47371 * 295.20723 * 9 8 6 38 38 H 1.08997 * 109.47292 * 316.01734 * 10 8 6 39 39 H 1.08994 * 109.46982 * 76.01364 * 10 8 6 40 40 H 0.96698 * 113.99405 * 299.99960 * 13 11 10 41 41 H 0.97003 * 119.99958 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.47509 * 300.19701 * 24 22 6 43 43 H 1.09005 * 109.46857 * 60.20448 * 24 22 6 44 44 H 1.09005 * 109.47285 * 180.19657 * 24 22 6 45 45 H 1.09006 * 109.46392 * 294.17620 * 25 3 2 46 46 H 1.08999 * 109.46104 * 54.14621 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6651 2.0685 1.2504 5 6 2.0607 3.5439 1.1567 6 6 3.5676 3.6482 0.9058 7 1 4.1079 3.2132 1.7465 8 7 3.9441 5.0606 0.7583 9 6 5.3681 5.1935 0.4231 10 6 3.6152 5.8224 1.9704 11 6 3.6404 7.3192 1.6546 12 1 2.9890 7.5223 0.8045 13 8 4.9758 7.7166 1.3368 14 6 3.1577 8.0939 2.8537 15 1 2.8621 7.5709 3.7512 16 6 3.0925 9.4703 2.8047 17 7 3.4521 10.1071 1.7116 18 14 2.4949 10.4305 4.2913 19 1 3.6503 10.7641 5.1624 20 1 1.8374 11.6832 3.8398 21 1 1.5216 9.6077 5.0535 22 6 3.9175 2.8875 -0.3761 23 1 4.9949 2.9221 -0.5372 24 6 3.2015 3.5325 -1.5645 25 6 3.4680 1.4311 -0.2380 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.5904 1.9905 1.4148 32 1 2.1944 1.6028 2.0817 33 1 1.5214 4.0138 0.3342 34 1 1.8116 4.0475 2.0908 35 1 5.5874 4.6079 -0.4697 36 1 5.6010 6.2419 0.2362 37 1 5.9725 4.8296 1.2539 38 1 2.6211 5.5411 2.3179 39 1 4.3472 5.6027 2.7475 40 1 5.6114 7.5646 2.0495 41 1 3.4066 11.0754 1.6772 42 1 2.1243 3.4989 -1.4015 43 1 3.5220 4.5697 -1.6624 44 1 3.4481 2.9884 -2.4762 45 1 3.9888 0.9683 0.6003 46 1 3.7028 0.8901 -1.1547 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929998480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:35 Heat of formation + Delta-G solvation = -42.789848 kcal Electronic energy + Delta-G solvation = -22446.082388 eV Core-core repulsion = 19370.618906 eV Total energy + Delta-G solvation = -3075.463482 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.80551 -37.20859 -35.26691 -33.07289 -32.08387 -31.52849 -29.70008 -28.52689 -26.58037 -25.39050 -24.50362 -22.77701 -22.18305 -21.00287 -20.06680 -18.32718 -16.96068 -16.41292 -15.36484 -14.96480 -14.73120 -14.59414 -14.46994 -14.42305 -13.99502 -13.85251 -13.22894 -12.93127 -12.85092 -12.25372 -12.16837 -12.07440 -12.01620 -11.63098 -11.41086 -11.24769 -11.04343 -10.97235 -10.91719 -10.81098 -10.75345 -10.60707 -10.50655 -10.09290 -9.96709 -9.67581 -8.96781 -8.53582 -8.31867 -8.06804 -7.47005 -5.96745 -4.14824 3.29235 3.36500 3.38971 3.84228 4.35868 4.54977 4.75744 4.91229 5.00351 5.07730 5.25114 5.29805 5.33967 5.36228 5.43127 5.59465 5.62075 5.66652 5.71276 5.75671 5.87456 5.93978 5.98184 6.04831 6.08754 6.12079 6.17708 6.22168 6.34032 6.42320 6.47256 6.55847 6.64274 6.82219 6.88666 7.05834 7.09989 7.10784 7.63801 7.80810 7.83148 8.03858 8.26506 8.88799 9.42051 9.62188 11.07229 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.027707 B = 0.004355 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.345057 B = 6428.226934 C = 7063.530582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 N -0.533 5.533 4 C 0.057 3.943 5 C -0.113 4.113 6 C 0.087 3.913 7 H 0.023 0.977 8 N -0.524 5.524 9 C 0.011 3.989 10 C 0.029 3.971 11 C 0.238 3.762 12 H 0.064 0.936 13 O -0.559 6.559 14 C -0.572 4.572 15 H 0.053 0.947 16 C 0.080 3.920 17 N -0.858 5.858 18 Si 0.887 3.113 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.081 4.081 23 H 0.069 0.931 24 C -0.127 4.127 25 C 0.063 3.937 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.026 0.974 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.106 0.894 37 H 0.006 0.994 38 H 0.070 0.930 39 H 0.017 0.983 40 H 0.339 0.661 41 H 0.260 0.740 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.036 0.964 45 H 0.026 0.974 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 -18.495 -3.224 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.258 5.258 4 C -0.071 4.071 5 C -0.151 4.151 6 C -0.022 4.022 7 H 0.041 0.959 8 N -0.248 5.248 9 C -0.136 4.136 10 C -0.098 4.098 11 C 0.180 3.820 12 H 0.082 0.918 13 O -0.362 6.362 14 C -0.611 4.611 15 H 0.071 0.929 16 C -0.126 4.126 17 N -0.493 5.493 18 Si 0.715 3.285 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.100 4.100 23 H 0.088 0.912 24 C -0.184 4.184 25 C -0.065 4.065 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.025 0.975 38 H 0.089 0.911 39 H 0.035 0.965 40 H 0.183 0.817 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.145 -17.707 -4.670 18.438 hybrid contribution 0.806 -0.480 2.894 3.042 sum -1.339 -18.187 -1.776 18.322 Atomic orbital electron populations 1.21805 0.94944 1.01220 1.02691 1.22043 0.96122 0.89227 1.00308 1.61950 1.13835 1.14768 1.35250 1.22147 1.00628 0.94905 0.89467 1.21741 0.95814 0.94515 1.03024 1.21638 0.95464 0.89842 0.95232 0.95926 1.62100 1.18544 1.07613 1.36530 1.22806 0.87361 1.05276 0.98201 1.23141 0.99518 0.98380 0.88799 1.19367 0.81498 0.84950 0.96159 0.91818 1.86540 1.19821 1.87638 1.42175 1.21641 1.47153 0.92009 1.00272 0.92874 1.25013 0.94116 0.97857 0.95580 1.70084 1.44828 1.08064 1.26351 0.86701 0.78985 0.79619 0.83211 1.20653 1.21116 1.19894 1.21219 0.99497 0.92953 0.96348 0.91245 1.21609 1.01404 1.00578 0.94855 1.22118 0.87266 0.97234 0.99914 0.91733 0.92623 0.92595 0.91063 0.95412 0.90488 0.95538 0.89708 0.91199 0.92916 0.87579 0.97543 0.91135 0.96474 0.81710 0.93049 0.91598 0.91629 0.94492 0.95576 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.84 37.16 0.37 -0.91 16 2 C 0.05 0.49 5.68 -3.82 -0.02 0.46 16 3 N -0.53 -6.19 3.94 -234.66 -0.92 -7.12 16 4 C 0.06 0.69 5.29 -3.83 -0.02 0.67 16 5 C -0.11 -1.65 4.77 -26.65 -0.13 -1.78 16 6 C 0.09 1.34 1.70 -67.59 -0.11 1.22 16 7 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 8 N -0.52 -9.53 3.75 -234.75 -0.88 -10.41 16 9 C 0.01 0.20 8.64 60.06 0.52 0.71 16 10 C 0.03 0.60 4.58 -3.83 -0.02 0.58 16 11 C 0.24 6.00 3.02 -27.88 -0.08 5.92 16 12 H 0.06 1.82 8.14 -51.93 -0.42 1.40 16 13 O -0.56 -14.03 9.67 -35.23 -0.34 -14.37 16 14 C -0.57 -15.69 8.76 -34.44 -0.30 -15.99 16 15 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 16 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 17 N -0.86 -25.40 12.84 55.43 0.71 -24.69 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.08 -1.08 2.21 -90.54 -0.20 -1.28 16 23 H 0.07 0.92 6.40 -51.93 -0.33 0.59 16 24 C -0.13 -1.78 8.52 37.16 0.32 -1.46 16 25 C 0.06 0.73 4.90 -3.83 -0.02 0.72 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 29 H 0.07 0.63 7.99 -51.93 -0.41 0.21 16 30 H 0.03 0.26 8.12 -51.92 -0.42 -0.16 16 31 H 0.08 0.87 6.21 -51.93 -0.32 0.55 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 1.35 6.58 -51.93 -0.34 1.01 16 34 H 0.07 1.07 6.23 -51.93 -0.32 0.75 16 35 H 0.05 0.81 5.94 -51.93 -0.31 0.50 16 36 H 0.11 2.09 5.37 -51.93 -0.28 1.81 16 37 H 0.01 0.10 8.09 -51.93 -0.42 -0.32 16 38 H 0.07 1.45 5.67 -51.93 -0.29 1.15 16 39 H 0.02 0.36 8.02 -51.93 -0.42 -0.06 16 40 H 0.34 7.70 9.04 45.56 0.41 8.11 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.07 0.97 6.01 -51.93 -0.31 0.66 16 43 H 0.06 1.05 7.36 -51.93 -0.38 0.67 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.76 8.02 -51.93 -0.42 0.35 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -29.11 338.89 -8.56 -37.66 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.41 Total: 6.61 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 0.20 Total: -8.98 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: -1.09 Total: -42.21 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.34 Total: -14.37 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.11 -8.56 -37.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929998480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.127 kcal (2) G-P(sol) polarization free energy of solvation -29.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds