Wall clock time and date at job start Mon Mar 30 2020 01:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47078 * 2 1 4 4 N 1.46905 * 109.47085 * 182.33133 * 3 2 1 5 5 C 1.46897 * 110.99698 * 164.11684 * 4 3 2 6 6 C 1.52997 * 109.47354 * 293.95101 * 5 4 3 7 7 N 1.46904 * 109.46918 * 180.02562 * 6 5 4 8 8 C 1.48525 * 111.00260 * 52.60341 * 7 6 5 9 9 C 1.54943 * 103.22746 * 159.71937 * 8 7 6 10 10 C 1.54594 * 102.92130 * 322.58719 * 9 8 7 11 11 C 1.47908 * 110.99734 * 170.00337 * 7 6 5 12 12 C 1.46900 * 110.99805 * 288.07044 * 4 3 2 13 13 C 1.53001 * 109.47114 * 160.21411 * 12 4 3 14 14 H 1.08999 * 109.46850 * 54.80816 * 13 12 4 15 15 O 1.42902 * 109.47337 * 294.81141 * 13 12 4 16 16 C 1.50693 * 109.47241 * 174.80704 * 13 12 4 17 17 H 1.08004 * 120.00357 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99890 * 180.02562 * 16 13 12 19 19 N 1.31509 * 120.00311 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 119.99879 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.46925 * 90.00121 * 20 18 16 22 22 H 1.48496 * 109.47248 * 209.99984 * 20 18 16 23 23 H 1.48499 * 109.47062 * 330.00031 * 20 18 16 24 24 H 1.09003 * 109.46777 * 59.99838 * 1 2 3 25 25 H 1.09003 * 109.46969 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46970 * 299.99736 * 1 2 3 27 27 H 1.09005 * 109.47273 * 240.00239 * 2 1 3 28 28 H 1.08991 * 109.47438 * 120.00131 * 2 1 3 29 29 H 1.09001 * 109.47027 * 62.33055 * 3 2 1 30 30 H 1.08999 * 109.47237 * 302.33241 * 3 2 1 31 31 H 1.09012 * 109.46885 * 173.95147 * 5 4 3 32 32 H 1.08998 * 109.47310 * 53.95631 * 5 4 3 33 33 H 1.08998 * 109.47345 * 300.00509 * 6 5 4 34 34 H 1.08995 * 109.46953 * 60.00409 * 6 5 4 35 35 H 1.08997 * 110.67089 * 278.15603 * 8 7 6 36 36 H 1.09002 * 110.66775 * 41.29008 * 8 7 6 37 37 H 1.08995 * 110.72538 * 204.23159 * 9 8 7 38 38 H 1.09000 * 110.72005 * 80.94580 * 9 8 7 39 39 H 1.08996 * 110.31281 * 263.03917 * 10 9 8 40 40 H 1.09000 * 110.39453 * 140.91602 * 10 9 8 41 41 H 1.08995 * 109.91619 * 333.50536 * 11 7 6 42 42 H 1.08999 * 109.91918 * 94.60079 * 11 7 6 43 43 H 1.08998 * 109.47081 * 280.21446 * 12 4 3 44 44 H 1.09000 * 109.47225 * 40.21929 * 12 4 3 45 45 H 0.96699 * 113.99802 * 295.18979 * 15 13 12 46 46 H 0.97002 * 120.00412 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5079 1.4429 -0.0563 5 6 4.0199 2.7671 -0.4337 6 6 3.6005 3.0857 -1.8701 7 7 4.1130 4.4097 -2.2475 8 6 5.5735 4.5068 -1.9958 9 6 6.0117 5.6857 -2.9007 10 6 5.1372 5.4972 -4.1615 11 6 3.9363 4.6533 -3.6957 12 6 4.0838 1.0000 1.2204 13 6 5.5264 0.5416 0.9975 14 1 6.0912 1.3402 0.5167 15 8 5.5342 -0.6173 0.1614 16 6 6.1583 0.2080 2.3243 17 1 5.5879 0.3121 3.2355 18 6 7.4646 -0.2301 2.3750 19 7 8.1594 -0.3564 1.2656 20 14 8.2476 -0.6442 4.0197 21 1 8.0160 -2.0776 4.3312 22 1 9.7077 -0.3819 3.9529 23 1 7.6415 0.1975 5.0824 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.7111 1.9441 0.9102 30 1 1.6429 1.9683 -0.8683 31 1 5.1077 2.7695 -0.3637 32 1 3.6109 3.5202 0.2398 33 1 4.0094 2.3326 -2.5436 34 1 2.5127 3.0833 -1.9400 35 1 5.7691 4.7330 -0.9476 36 1 6.0770 3.5866 -2.2923 37 1 7.0699 5.6079 -3.1501 38 1 5.7965 6.6406 -2.4212 39 1 5.6953 4.9673 -4.9333 40 1 4.7982 6.4630 -4.5365 41 1 3.9185 3.7048 -4.2323 42 1 3.0072 5.1959 -3.8703 43 1 4.0709 1.8264 1.9310 44 1 3.4964 0.1714 1.6160 45 1 5.1126 -1.3917 0.5586 46 1 9.0786 -0.6643 1.3013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930457172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:05 Heat of formation + Delta-G solvation = -52.700348 kcal Electronic energy + Delta-G solvation = -21913.198288 eV Core-core repulsion = 18837.305055 eV Total energy + Delta-G solvation = -3075.893233 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.04466 -37.60596 -35.11854 -33.36453 -32.07152 -31.86999 -28.97414 -28.59563 -27.21566 -25.53462 -23.74375 -22.16390 -21.08677 -20.73607 -20.37873 -19.50791 -16.96229 -16.04212 -15.95714 -15.14900 -14.89825 -14.70120 -14.55058 -14.06539 -13.80602 -13.60577 -13.37207 -12.90420 -12.81551 -12.66131 -12.45333 -11.95353 -11.69175 -11.40213 -11.38628 -11.35490 -11.10864 -10.99557 -10.94441 -10.85300 -10.74173 -10.63761 -10.53663 -10.28279 -10.01096 -9.95553 -8.92947 -8.56307 -8.30459 -8.11338 -7.53551 -5.99050 -4.17412 3.27970 3.35110 3.37674 3.97390 4.37731 4.57973 4.73226 4.74444 4.98620 5.16674 5.28060 5.31035 5.32825 5.37327 5.49456 5.55172 5.63534 5.70383 5.74684 5.79060 5.81137 5.88408 5.91424 6.00645 6.02739 6.08788 6.15288 6.17894 6.18268 6.26544 6.32944 6.43048 6.47424 6.54424 6.68601 6.91011 6.98530 7.13902 7.62505 7.68298 7.81270 7.95454 8.22783 8.87871 9.49144 9.65709 11.04831 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.012717 B = 0.005598 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.217828 B = 5000.387044 C = 6783.717023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.052 3.948 4 N -0.527 5.527 5 C 0.059 3.941 6 C 0.052 3.948 7 N -0.520 5.520 8 C 0.031 3.969 9 C -0.124 4.124 10 C -0.130 4.130 11 C 0.036 3.964 12 C 0.031 3.969 13 C 0.241 3.759 14 H 0.052 0.948 15 O -0.555 6.555 16 C -0.575 4.575 17 H 0.054 0.946 18 C 0.080 3.920 19 N -0.859 5.859 20 Si 0.887 3.113 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.031 0.969 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.027 0.973 44 H 0.064 0.936 45 H 0.342 0.658 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.088 8.019 -7.554 14.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.076 4.076 4 N -0.251 5.251 5 C -0.070 4.070 6 C -0.076 4.076 7 N -0.245 5.245 8 C -0.097 4.097 9 C -0.162 4.162 10 C -0.169 4.169 11 C -0.092 4.092 12 C -0.096 4.096 13 C 0.183 3.817 14 H 0.069 0.931 15 O -0.357 6.357 16 C -0.613 4.613 17 H 0.072 0.928 18 C -0.126 4.126 19 N -0.494 5.494 20 Si 0.715 3.285 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.045 0.955 44 H 0.082 0.918 45 H 0.185 0.815 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.750 8.437 -8.104 15.229 hybrid contribution 0.347 -0.634 1.569 1.727 sum -9.403 7.802 -6.535 13.857 Atomic orbital electron populations 1.21740 0.96422 1.01270 1.01229 1.21506 0.94292 0.96921 1.03002 1.22180 0.89105 0.96722 0.99607 1.61994 1.04823 1.25074 1.33256 1.22072 1.01205 0.89373 0.94330 1.22297 0.99899 0.88473 0.96953 1.64795 1.14646 1.29170 1.15867 1.23277 0.88014 0.97687 1.00682 1.22482 0.99182 0.99027 0.95516 1.22385 0.96363 1.00115 0.97989 1.22845 0.98794 0.98993 0.88594 1.23116 1.00332 0.98574 0.87570 1.19251 0.87053 0.85708 0.89726 0.93079 1.86540 1.82165 1.21177 1.45819 1.21687 0.98008 1.48213 0.93431 0.92795 1.25016 0.97018 0.94524 0.96026 1.70083 1.09325 1.43802 1.26223 0.86699 0.78568 0.78830 0.84432 1.20519 1.21127 1.19890 0.93098 0.92875 0.93209 0.91127 0.91878 0.95795 0.91554 0.90027 0.95073 0.93617 0.91104 0.89786 0.92973 0.91105 0.90976 0.91637 0.91315 0.93783 0.90746 0.95493 0.91778 0.81532 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.12 -1.69 5.96 -26.73 -0.16 -1.85 16 3 C 0.05 0.80 4.83 -3.82 -0.02 0.78 16 4 N -0.53 -9.70 4.34 -234.62 -1.02 -10.71 16 5 C 0.06 1.02 4.44 -3.83 -0.02 1.00 16 6 C 0.05 0.79 4.99 -3.82 -0.02 0.77 16 7 N -0.52 -7.32 5.40 -230.45 -1.24 -8.56 16 8 C 0.03 0.44 5.10 -1.90 -0.01 0.43 16 9 C -0.12 -1.40 7.06 -24.87 -0.18 -1.58 16 10 C -0.13 -1.35 6.93 -25.37 -0.18 -1.52 16 11 C 0.04 0.42 6.70 -2.75 -0.02 0.41 16 12 C 0.03 0.66 4.43 -3.82 -0.02 0.64 16 13 C 0.24 6.13 2.92 -27.89 -0.08 6.05 16 14 H 0.05 1.44 6.66 -51.93 -0.35 1.10 16 15 O -0.56 -14.59 12.69 -35.23 -0.45 -15.03 16 16 C -0.57 -15.80 8.72 -34.44 -0.30 -16.10 16 17 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 18 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 19 N -0.86 -25.41 12.84 55.43 0.71 -24.70 16 20 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.96 6.60 -51.93 -0.34 0.62 16 29 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 30 H 0.07 0.94 5.94 -51.93 -0.31 0.63 16 31 H 0.08 1.60 5.22 -51.92 -0.27 1.33 16 32 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.05 0.76 7.81 -51.93 -0.41 0.35 16 34 H 0.07 1.01 6.28 -51.93 -0.33 0.69 16 35 H 0.08 1.23 7.66 -51.93 -0.40 0.83 16 36 H 0.05 0.81 8.00 -51.93 -0.42 0.39 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.04 0.53 7.57 -51.93 -0.39 0.13 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.57 8.00 -51.93 -0.42 0.16 16 44 H 0.06 1.30 6.27 -51.93 -0.33 0.98 16 45 H 0.34 8.14 9.02 45.56 0.41 8.55 16 46 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -29.85 354.07 -10.13 -39.98 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.72 Total: 7.69 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -0.72 Total: -10.14 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -1.55 Total: -43.97 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.45 Total: -15.03 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.85 -10.13 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930457172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.722 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds