Wall clock time and date at job start Mon Mar 30 2020 01:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.46896 * 111.00029 * 176.81114 * 14 13 12 16 16 C 1.53010 * 109.47303 * 293.80323 * 15 14 13 17 17 C 1.52994 * 109.46916 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.46769 * 179.97438 * 17 16 15 19 19 C 1.53003 * 109.47088 * 180.02562 * 18 17 16 20 20 O 1.42894 * 109.47197 * 180.02562 * 19 18 17 21 21 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 22 22 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 27 27 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 28 28 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 29 29 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 30 30 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 31 31 H 1.09001 * 109.49268 * 178.36932 * 13 12 11 32 32 H 1.09003 * 109.47316 * 53.80231 * 15 14 13 33 33 H 1.08995 * 109.47173 * 173.80324 * 15 14 13 34 34 H 1.08996 * 109.46468 * 300.00100 * 16 15 14 35 35 H 1.09002 * 109.46771 * 59.99613 * 16 15 14 36 36 H 1.08996 * 109.47838 * 299.99511 * 17 16 15 37 37 H 1.09002 * 109.47512 * 60.00317 * 17 16 15 38 38 H 1.08995 * 109.47547 * 300.00608 * 18 17 16 39 39 H 1.09001 * 109.46885 * 60.00788 * 18 17 16 40 40 H 1.09003 * 109.46830 * 300.00018 * 19 18 17 41 41 H 1.08998 * 109.47180 * 59.99808 * 19 18 17 42 42 H 0.96698 * 114.00476 * 179.97438 * 20 19 18 43 43 H 1.08999 * 109.48998 * 299.35229 * 21 14 13 44 44 H 1.09002 * 109.48626 * 179.28754 * 21 14 13 45 45 H 1.09001 * 109.48531 * 303.15255 * 22 11 10 46 46 H 1.09000 * 109.48854 * 63.21719 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 7 5.4905 -2.6366 0.0175 12 6 6.0229 -2.0854 -1.2364 13 6 7.5503 -2.0290 -1.1580 14 7 8.0758 -3.3797 -0.9147 15 6 9.5448 -3.3797 -0.9080 16 6 10.0612 -3.0383 -2.3073 17 6 11.5912 -3.0377 -2.3001 18 6 12.1075 -2.6969 -3.6995 19 6 13.6376 -2.6969 -3.6925 20 8 14.1198 -2.3780 -4.9993 21 6 7.5435 -3.9309 0.3391 22 6 6.0161 -3.9873 0.2607 23 1 -0.4849 0.8400 0.0004 24 1 3.8786 -0.6821 -0.8838 25 1 3.8711 -0.6785 0.8962 26 1 3.6545 -3.1486 0.9003 27 1 3.6618 -3.1522 -0.8796 28 1 5.7248 -2.7223 -2.0692 29 1 5.6292 -1.0803 -1.3878 30 1 7.8485 -1.3705 -0.3422 31 1 7.9489 -1.6475 -2.0980 32 1 9.9050 -2.6367 -0.1965 33 1 9.9068 -4.3660 -0.6179 34 1 9.7011 -3.7814 -3.0187 35 1 9.6991 -2.0520 -2.5975 36 1 11.9510 -2.2944 -1.5887 37 1 11.9536 -4.0239 -2.0097 38 1 11.7478 -3.4404 -4.4107 39 1 11.7453 -1.7108 -3.9902 40 1 13.9976 -1.9535 -2.9813 41 1 13.9996 -3.6831 -3.4019 42 1 15.0841 -2.3595 -5.0690 43 1 7.8416 -3.2940 1.1719 44 1 7.9372 -4.9360 0.4906 45 1 5.6174 -4.3688 1.2007 46 1 5.7178 -4.6458 -0.5551 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931492942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:52 Heat of formation + Delta-G solvation = -62.289399 kcal Electronic energy + Delta-G solvation = -20728.910077 eV Core-core repulsion = 17652.601031 eV Total energy + Delta-G solvation = -3076.309046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.25257 -37.69089 -36.36209 -34.63288 -32.90011 -31.17774 -30.60925 -29.63545 -26.84999 -24.67276 -23.60661 -23.19211 -21.61727 -21.07464 -20.15042 -19.49097 -17.71551 -16.91898 -16.40478 -15.88004 -15.34086 -14.86832 -14.76870 -14.49150 -14.28736 -14.26991 -13.83092 -13.69411 -13.07905 -12.82226 -12.65490 -12.47707 -12.15965 -11.82373 -11.64214 -11.52626 -11.30315 -11.21676 -11.08677 -10.97381 -10.86855 -10.71136 -10.42844 -10.38430 -9.87230 -9.86108 -9.63532 -9.18238 -8.50839 -8.35607 -7.81119 -6.02542 -4.00432 3.33167 3.40575 3.46601 3.64927 3.96583 4.37265 4.47939 4.52548 4.68700 4.73542 4.84906 4.97182 5.02819 5.16739 5.23012 5.27069 5.31225 5.33128 5.47475 5.48973 5.53911 5.55725 5.59582 5.69149 5.73066 5.82561 5.88681 6.02895 6.06765 6.10234 6.11787 6.23147 6.29002 6.40784 6.78932 7.01130 7.04963 7.19299 7.19903 7.33950 7.62417 7.66365 7.87396 8.55250 9.01758 9.60035 11.10846 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.026270 B = 0.002888 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.598662 B = 9693.630463 C =10480.668399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.007 4.007 10 C 0.071 3.929 11 N -0.544 5.544 12 C 0.055 3.945 13 C 0.056 3.944 14 N -0.541 5.541 15 C 0.057 3.943 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.121 4.121 19 C 0.074 3.926 20 O -0.577 6.577 21 C 0.060 3.940 22 C 0.056 3.944 23 H 0.263 0.737 24 H 0.011 0.989 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.027 0.973 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.379 0.621 43 H 0.040 0.960 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.267 -7.232 -3.902 28.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.044 4.044 10 C -0.055 4.055 11 N -0.269 5.269 12 C -0.073 4.073 13 C -0.072 4.072 14 N -0.266 5.266 15 C -0.071 4.071 16 C -0.154 4.154 17 C -0.153 4.153 18 C -0.158 4.158 19 C -0.003 4.003 20 O -0.382 6.382 21 C -0.068 4.068 22 C -0.072 4.072 23 H 0.072 0.928 24 H 0.029 0.971 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.225 0.775 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 26.449 -7.093 -4.009 27.675 hybrid contribution 0.903 0.856 0.177 1.257 sum 27.351 -6.237 -3.832 28.314 Atomic orbital electron populations 1.69916 1.06306 1.26877 1.51213 1.25004 0.94722 0.99178 0.94532 0.86765 0.80516 0.83500 0.78481 1.20357 1.21447 1.18773 1.21092 0.89446 0.94485 1.50875 0.91138 1.19566 0.96417 0.91794 0.96663 1.22108 0.83298 1.00288 0.99823 1.62269 1.09934 1.20681 1.34055 1.22166 0.93083 1.01044 0.91017 1.22242 0.95352 0.88861 1.00710 1.62162 1.06757 1.22867 1.34829 1.22081 0.87636 1.00798 0.96634 1.21583 0.93974 1.02569 0.97255 1.21458 0.95913 1.01805 0.96119 1.21528 0.93383 1.03152 0.97775 1.22235 0.95408 0.98666 0.84031 1.86490 1.26622 1.93784 1.31313 1.22140 0.95223 0.99239 0.90209 1.22108 0.93551 0.90710 1.00853 0.92757 0.97122 0.95816 0.91505 0.95494 0.94390 0.89689 0.94187 0.90485 0.95016 0.91059 0.90966 0.91664 0.91918 0.91786 0.91115 0.91164 0.93739 0.93723 0.77472 0.94192 0.90844 0.90559 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.16 3.97 -27.88 -0.11 -0.27 16 10 C 0.07 1.49 4.90 -3.83 -0.02 1.47 16 11 N -0.54 -9.69 4.71 -234.47 -1.10 -10.80 16 12 C 0.06 0.91 5.41 -3.77 -0.02 0.89 16 13 C 0.06 0.76 5.41 -3.76 -0.02 0.74 16 14 N -0.54 -6.77 4.71 -234.47 -1.10 -7.87 16 15 C 0.06 0.55 4.96 -3.82 -0.02 0.53 16 16 C -0.12 -1.01 5.15 -26.73 -0.14 -1.15 16 17 C -0.11 -0.80 5.21 -26.73 -0.14 -0.94 16 18 C -0.12 -0.92 5.58 -26.73 -0.15 -1.07 16 19 C 0.07 0.50 7.05 37.16 0.26 0.76 16 20 O -0.58 -4.54 13.66 -35.23 -0.48 -5.02 16 21 C 0.06 0.75 5.61 -3.77 -0.02 0.73 16 22 C 0.06 0.83 5.61 -3.77 -0.02 0.81 16 23 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 24 H 0.01 0.26 5.93 -51.93 -0.31 -0.05 16 25 H 0.02 0.60 7.19 -51.93 -0.37 0.22 16 26 H 0.07 1.38 8.03 -51.93 -0.42 0.97 16 27 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.49 6.34 -51.93 -0.33 1.16 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.93 6.34 -51.93 -0.33 0.60 16 32 H 0.03 0.32 8.12 -51.93 -0.42 -0.11 16 33 H 0.07 0.63 8.03 -51.93 -0.42 0.22 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.61 6.49 -51.93 -0.34 0.27 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.38 1.19 9.12 45.56 0.42 1.60 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 46 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 354.95 15.07 5.35 5.35 Total: -1.00 -32.55 354.95 -10.08 -42.62 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -8.01 Total: -3.26 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.83 Total: -11.01 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -1.43 Total: -46.10 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.48 Total: -5.02 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.55 -10.08 -42.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931492942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.667 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds