Wall clock time and date at job start Mon Mar 30 2020 00:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34771 * 119.99688 * 2 1 4 4 O 1.21277 * 120.00324 * 355.53480 * 3 2 1 5 5 C 1.50706 * 119.99874 * 175.54174 * 3 2 1 6 6 N 1.46905 * 109.54059 * 38.10144 * 5 3 2 7 7 C 1.46896 * 111.00236 * 61.34476 * 6 5 3 8 8 C 1.53001 * 109.47362 * 179.19166 * 7 6 5 9 9 C 1.52999 * 109.47049 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.46877 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00288 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00052 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99572 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00028 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47133 * 90.00158 * 14 12 10 16 16 H 1.48500 * 109.47053 * 210.00273 * 14 12 10 17 17 H 1.48499 * 109.47038 * 330.00182 * 14 12 10 18 18 C 1.53178 * 109.61946 * 158.32429 * 5 3 2 19 19 C 1.53089 * 109.16298 * 62.92845 * 18 5 3 20 20 O 1.42902 * 109.41526 * 57.60835 * 19 18 5 21 21 C 1.42902 * 114.10043 * 298.84597 * 20 19 18 22 22 C 1.53092 * 109.41589 * 61.15214 * 21 20 19 23 23 H 1.08997 * 109.46982 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47231 * 300.00471 * 1 2 3 25 25 H 1.09003 * 109.47135 * 60.00741 * 1 2 3 26 26 H 0.96998 * 119.99845 * 179.97438 * 2 1 3 27 27 H 1.00904 * 110.99395 * 185.29543 * 6 5 3 28 28 H 1.09001 * 109.47121 * 59.18712 * 7 6 5 29 29 H 1.08999 * 109.47062 * 299.19470 * 7 6 5 30 30 H 1.09002 * 109.46668 * 59.99946 * 8 7 6 31 31 H 1.09002 * 109.46995 * 299.99742 * 8 7 6 32 32 H 1.08999 * 109.47604 * 300.00443 * 9 8 7 33 33 H 1.09001 * 109.46607 * 60.00345 * 9 8 7 34 34 H 0.97005 * 119.99645 * 179.97438 * 13 12 10 35 35 H 1.08992 * 109.52582 * 182.83506 * 18 5 3 36 36 H 1.09007 * 109.51896 * 303.02610 * 18 5 3 37 37 H 1.09006 * 109.48264 * 297.62693 * 19 18 5 38 38 H 1.08997 * 109.48980 * 177.59993 * 19 18 5 39 39 H 1.09003 * 109.47840 * 301.17401 * 21 20 19 40 40 H 1.08997 * 109.49210 * 181.14631 * 21 20 19 41 41 H 1.09004 * 109.52203 * 182.48622 * 22 21 20 42 42 H 1.08996 * 109.52254 * 62.30172 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5352 2.2159 -0.0818 5 6 3.6425 1.1692 0.1015 6 7 4.1888 0.0481 -0.6748 7 6 3.8399 0.1724 -2.0963 8 6 4.4420 -0.9998 -2.8737 9 6 4.0780 -0.8706 -4.3542 10 6 4.6715 -2.0248 -5.1199 11 1 5.2501 -2.7758 -4.6024 12 6 4.4759 -2.1223 -6.4813 13 7 3.7718 -1.2077 -7.1115 14 14 5.2110 -3.5535 -7.4304 15 1 4.2409 -4.6774 -7.4613 16 1 5.5142 -3.1230 -8.8189 17 1 6.4623 -3.9977 -6.7655 18 6 4.1932 2.4890 -0.4473 19 6 3.6812 3.6449 0.4160 20 8 4.0750 3.4345 1.7735 21 6 3.5505 2.2390 2.3546 22 6 4.0572 1.0266 1.5691 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.9500 -0.8400 0.0004 27 1 5.1879 -0.0234 -0.5526 28 1 4.2364 1.1095 -2.4871 29 1 2.7556 0.1628 -2.2064 30 1 4.0454 -1.9369 -2.4828 31 1 5.5264 -0.9901 -2.7636 32 1 2.9936 -0.8805 -4.4640 33 1 4.4743 0.0665 -4.7452 34 1 3.6345 -1.2761 -8.0694 35 1 5.2826 2.4686 -0.4198 36 1 3.8563 2.6250 -1.4751 37 1 2.5938 3.6897 0.3557 38 1 4.1042 4.5828 0.0560 39 1 2.4613 2.2653 2.3197 40 1 3.8792 2.1638 3.3911 41 1 3.6231 0.1166 1.9835 42 1 5.1439 0.9766 1.6373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119439209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:58 Heat of formation + Delta-G solvation = -92.072064 kcal Electronic energy + Delta-G solvation = -21865.345974 eV Core-core repulsion = 18651.912361 eV Total energy + Delta-G solvation = -3213.433613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.02753 -38.17504 -36.58469 -34.60273 -33.98429 -32.27913 -31.17797 -29.98641 -27.39363 -26.24917 -24.06106 -23.88258 -22.34305 -21.71842 -20.21763 -19.81774 -16.89874 -16.74909 -16.28128 -16.05582 -15.73068 -15.59968 -14.84943 -14.66526 -14.49921 -14.39206 -13.93077 -13.70051 -13.25392 -12.66234 -12.60871 -12.35744 -12.28910 -12.26651 -11.74036 -11.64384 -11.43079 -10.98551 -10.93342 -10.79226 -10.66605 -10.53851 -9.94910 -9.73667 -9.40260 -9.25420 -9.10945 -9.05474 -8.43787 -8.37295 -6.02239 -4.04923 2.56375 3.21740 3.30107 3.36523 3.39603 3.82168 4.02095 4.43941 4.46974 4.63747 4.77072 4.89032 5.14152 5.19080 5.31901 5.33641 5.41840 5.43435 5.49700 5.56792 5.63372 5.70664 5.72593 5.78590 5.89448 5.95008 6.05827 6.21833 6.50736 6.56515 6.61841 7.02069 7.05475 7.16197 7.35212 7.51550 7.64142 7.77581 7.97232 8.22715 8.39594 9.02204 9.59376 11.09115 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027272 B = 0.004000 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.429407 B = 6998.091944 C = 7351.679197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.720 5.720 3 C 0.533 3.467 4 O -0.543 6.543 5 C 0.095 3.905 6 N -0.677 5.677 7 C 0.049 3.951 8 C -0.104 4.104 9 C 0.023 3.977 10 C -0.520 4.520 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.895 5.895 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.168 4.168 19 C 0.044 3.956 20 O -0.385 6.385 21 C 0.061 3.939 22 C -0.138 4.138 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.413 0.587 27 H 0.349 0.651 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.015 0.985 33 H 0.014 0.986 34 H 0.260 0.740 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.375 4.317 18.709 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.371 5.371 3 C 0.319 3.681 4 O -0.420 6.420 5 C 0.001 3.999 6 N -0.309 5.309 7 C -0.079 4.079 8 C -0.142 4.142 9 C -0.015 4.015 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.208 4.208 19 C -0.033 4.033 20 O -0.303 6.303 21 C -0.017 4.017 22 C -0.176 4.176 23 H 0.094 0.906 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.249 0.751 27 H 0.169 0.831 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.312 4.795 18.722 19.608 hybrid contribution 1.043 -0.748 -1.249 1.791 sum -2.270 4.047 17.473 18.079 Atomic orbital electron populations 1.21557 0.79962 1.02317 1.02056 1.45794 1.07376 1.09472 1.74471 1.20297 0.89262 0.83596 0.74970 1.90566 1.70085 1.31210 1.50160 1.21158 0.91633 0.91565 0.95584 1.60812 1.19074 1.40540 1.10498 1.22308 1.00952 0.99356 0.85332 1.21614 0.99037 0.95736 0.97858 1.19053 0.96821 0.97117 0.88517 1.21227 1.32882 1.09034 0.92700 0.92660 1.25032 0.95324 0.96212 0.97900 1.69968 1.40022 1.34291 1.09184 0.86595 0.79549 0.82626 0.79237 1.20658 1.21235 1.19869 1.22714 1.01289 0.95326 1.01437 1.23066 1.02660 0.96964 0.80611 1.87872 1.73982 1.41455 1.27027 1.22541 0.98037 0.84150 0.96947 1.22206 1.02953 0.99790 0.92700 0.90591 0.92567 0.92121 0.75089 0.83148 0.94767 0.91380 0.92526 0.93425 0.96677 0.96800 0.92993 0.90615 0.89938 0.88793 0.89546 0.93104 0.88702 0.89793 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 10.71 59.85 0.64 1.51 16 2 N -0.72 -8.54 5.19 -67.07 -0.35 -8.89 16 3 C 0.53 7.37 4.44 -10.99 -0.05 7.32 16 4 O -0.54 -8.87 13.06 5.56 0.07 -8.80 16 5 C 0.10 1.17 0.65 -132.57 -0.09 1.08 16 6 N -0.68 -8.59 5.40 -100.95 -0.55 -9.14 16 7 C 0.05 0.80 4.98 -3.83 -0.02 0.78 16 8 C -0.10 -2.04 5.41 -26.73 -0.14 -2.18 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 11 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 14 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 C -0.17 -2.19 4.36 -26.59 -0.12 -2.30 16 19 C 0.04 0.57 6.54 37.20 0.24 0.81 16 20 O -0.38 -5.04 10.77 -35.23 -0.38 -5.42 16 21 C 0.06 0.65 6.60 37.21 0.25 0.90 16 22 C -0.14 -1.39 5.16 -26.59 -0.14 -1.53 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.41 4.53 8.23 -40.82 -0.34 4.19 16 27 H 0.35 4.10 8.70 -39.29 -0.34 3.76 16 28 H 0.03 0.58 6.32 -51.93 -0.33 0.26 16 29 H 0.07 1.20 6.84 -51.93 -0.36 0.84 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.20 6.56 -51.93 -0.34 0.86 16 37 H 0.09 1.39 5.20 -51.93 -0.27 1.12 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.60 7.13 -51.93 -0.37 0.23 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 329.66 15.07 4.97 4.97 Total: -1.00 -31.61 329.66 -7.44 -39.06 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.96 Total: 4.45 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 0.03 Total: -6.55 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.16 Total: -44.20 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.31 Total: -14.22 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.61 -7.44 -39.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119439209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.016 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds