Wall clock time and date at job start Mon Mar 30 2020 00:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34771 * 119.99688 * 2 1 4 4 O 1.21277 * 120.00324 * 355.53480 * 3 2 1 5 5 C 1.50706 * 119.99874 * 175.54174 * 3 2 1 6 6 N 1.46905 * 109.54059 * 38.10144 * 5 3 2 7 7 C 1.46896 * 111.00236 * 61.34476 * 6 5 3 8 8 C 1.53001 * 109.47362 * 179.19166 * 7 6 5 9 9 C 1.52999 * 109.47049 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.46877 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00288 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00052 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99572 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00028 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47133 * 90.00158 * 14 12 10 16 16 H 1.48500 * 109.47053 * 210.00273 * 14 12 10 17 17 H 1.48499 * 109.47038 * 330.00182 * 14 12 10 18 18 C 1.53178 * 109.61946 * 158.32429 * 5 3 2 19 19 C 1.53089 * 109.16298 * 62.92845 * 18 5 3 20 20 O 1.42902 * 109.41526 * 57.60835 * 19 18 5 21 21 C 1.42902 * 114.10043 * 298.84597 * 20 19 18 22 22 C 1.53092 * 109.41589 * 61.15214 * 21 20 19 23 23 H 1.08997 * 109.46982 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47231 * 300.00471 * 1 2 3 25 25 H 1.09003 * 109.47135 * 60.00741 * 1 2 3 26 26 H 0.96998 * 119.99845 * 179.97438 * 2 1 3 27 27 H 1.00904 * 110.99395 * 185.29543 * 6 5 3 28 28 H 1.09001 * 109.47121 * 59.18712 * 7 6 5 29 29 H 1.08999 * 109.47062 * 299.19470 * 7 6 5 30 30 H 1.09002 * 109.46668 * 59.99946 * 8 7 6 31 31 H 1.09002 * 109.46995 * 299.99742 * 8 7 6 32 32 H 1.08999 * 109.47604 * 300.00443 * 9 8 7 33 33 H 1.09001 * 109.46607 * 60.00345 * 9 8 7 34 34 H 0.97005 * 119.99645 * 179.97438 * 13 12 10 35 35 H 1.08992 * 109.52582 * 182.83506 * 18 5 3 36 36 H 1.09007 * 109.51896 * 303.02610 * 18 5 3 37 37 H 1.09006 * 109.48264 * 297.62693 * 19 18 5 38 38 H 1.08997 * 109.48980 * 177.59993 * 19 18 5 39 39 H 1.09003 * 109.47840 * 301.17401 * 21 20 19 40 40 H 1.08997 * 109.49210 * 181.14631 * 21 20 19 41 41 H 1.09004 * 109.52203 * 182.48622 * 22 21 20 42 42 H 1.08996 * 109.52254 * 62.30172 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5352 2.2159 -0.0818 5 6 3.6425 1.1692 0.1015 6 7 4.1888 0.0481 -0.6748 7 6 3.8399 0.1724 -2.0963 8 6 4.4420 -0.9998 -2.8737 9 6 4.0780 -0.8706 -4.3542 10 6 4.6715 -2.0248 -5.1199 11 1 5.2501 -2.7758 -4.6024 12 6 4.4759 -2.1223 -6.4813 13 7 3.7718 -1.2077 -7.1115 14 14 5.2110 -3.5535 -7.4304 15 1 4.2409 -4.6774 -7.4613 16 1 5.5142 -3.1230 -8.8189 17 1 6.4623 -3.9977 -6.7655 18 6 4.1932 2.4890 -0.4473 19 6 3.6812 3.6449 0.4160 20 8 4.0750 3.4345 1.7735 21 6 3.5505 2.2390 2.3546 22 6 4.0572 1.0266 1.5691 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.9500 -0.8400 0.0004 27 1 5.1879 -0.0234 -0.5526 28 1 4.2364 1.1095 -2.4871 29 1 2.7556 0.1628 -2.2064 30 1 4.0454 -1.9369 -2.4828 31 1 5.5264 -0.9901 -2.7636 32 1 2.9936 -0.8805 -4.4640 33 1 4.4743 0.0665 -4.7452 34 1 3.6345 -1.2761 -8.0694 35 1 5.2826 2.4686 -0.4198 36 1 3.8563 2.6250 -1.4751 37 1 2.5938 3.6897 0.3557 38 1 4.1042 4.5828 0.0560 39 1 2.4613 2.2653 2.3197 40 1 3.8792 2.1638 3.3911 41 1 3.6231 0.1166 1.9835 42 1 5.1439 0.9766 1.6373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119439209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:58 Heat of formation + Delta-G solvation = -115.936997 kcal Electronic energy + Delta-G solvation = -21866.380836 eV Core-core repulsion = 18651.912361 eV Total energy + Delta-G solvation = -3214.468475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.06249 -39.18271 -37.82736 -35.78452 -35.58419 -33.95390 -32.18854 -31.43727 -28.46932 -27.83320 -25.40242 -24.87027 -23.80491 -22.78604 -21.86579 -20.85968 -18.50949 -17.90592 -17.72510 -17.02844 -16.78913 -16.70703 -16.48601 -16.01504 -15.69912 -15.58627 -15.02057 -14.77891 -14.53419 -14.22718 -13.83073 -13.61945 -13.47992 -13.34058 -13.18267 -13.08388 -12.73881 -12.50225 -12.35617 -12.29813 -11.92152 -11.87695 -11.56155 -11.41400 -11.14714 -10.83214 -10.55802 -10.30533 -10.07163 -9.57711 -8.20160 -6.31468 1.40881 1.42048 1.49976 1.53218 2.26079 2.40936 2.83470 2.99055 3.13570 3.49800 3.67523 3.82294 3.95608 4.14895 4.26340 4.32491 4.34577 4.44474 4.47108 4.58744 4.59229 4.68441 4.74162 4.78500 4.89105 4.91999 4.98976 5.00488 5.02710 5.11911 5.24114 5.50929 5.53437 5.71576 5.75355 5.85767 6.21066 6.24262 6.29202 6.53221 6.86347 7.21472 7.38401 8.91845 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027272 B = 0.004000 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.429407 B = 6998.091944 C = 7351.679197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.714 5.714 3 C 0.524 3.476 4 O -0.574 6.574 5 C 0.098 3.902 6 N -0.659 5.659 7 C 0.066 3.934 8 C -0.088 4.088 9 C 0.024 3.976 10 C -0.540 4.540 11 H 0.064 0.936 12 C -0.002 4.002 13 N -0.936 5.936 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.261 1.261 18 C -0.167 4.167 19 C 0.047 3.953 20 O -0.395 6.395 21 C 0.056 3.944 22 C -0.130 4.130 23 H 0.105 0.895 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.419 0.581 27 H 0.361 0.639 28 H 0.024 0.976 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.057 0.943 32 H -0.013 1.013 33 H -0.014 1.014 34 H 0.263 0.737 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.037 0.963 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.125 2.594 20.233 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.365 5.365 3 C 0.310 3.690 4 O -0.454 6.454 5 C 0.003 3.997 6 N -0.292 5.292 7 C -0.063 4.063 8 C -0.126 4.126 9 C -0.013 4.013 10 C -0.578 4.578 11 H 0.082 0.918 12 C -0.200 4.200 13 N -0.577 5.577 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.185 1.185 18 C -0.207 4.207 19 C -0.029 4.029 20 O -0.314 6.314 21 C -0.021 4.021 22 C -0.168 4.168 23 H 0.124 0.876 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.256 0.744 27 H 0.182 0.818 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.005 0.995 33 H 0.004 0.996 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.056 0.944 40 H 0.141 0.859 41 H 0.120 0.880 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.052 3.042 20.275 20.604 hybrid contribution 0.600 -0.182 -1.699 1.811 sum -1.452 2.861 18.576 18.850 Atomic orbital electron populations 1.21683 0.79050 1.04063 1.01363 1.45835 1.08133 1.09174 1.73357 1.20629 0.90026 0.83635 0.74709 1.90564 1.70814 1.32334 1.51688 1.21196 0.90681 0.90765 0.97056 1.60683 1.19954 1.40679 1.07919 1.21924 0.99681 0.97465 0.87261 1.21337 0.99742 0.97269 0.94212 1.18967 0.94688 0.95227 0.92444 1.21696 1.32893 1.09750 0.93416 0.91777 1.26010 0.95673 0.99121 0.99181 1.70113 1.41482 1.36478 1.09580 0.85440 0.79148 0.78928 0.77496 1.19746 1.21040 1.18464 1.22687 1.01885 0.95907 1.00203 1.22949 1.01476 0.97475 0.81044 1.87858 1.74077 1.42738 1.26702 1.22736 0.97388 0.83580 0.98360 1.22209 1.03966 1.00226 0.90446 0.87645 0.92031 0.94044 0.74402 0.81827 0.95794 0.92833 0.91836 0.92438 0.99493 0.99610 0.92875 0.89464 0.92129 0.90775 0.88704 0.94442 0.85915 0.87972 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.62 10.71 127.77 1.37 2.98 16 2 N -0.71 -16.26 5.19 -484.51 -2.51 -18.78 16 3 C 0.52 14.27 4.44 87.66 0.39 14.66 16 4 O -0.57 -19.18 13.06 -3.02 -0.04 -19.22 16 5 C 0.10 2.26 0.65 2.90 0.00 2.26 16 6 N -0.66 -15.49 5.40 -473.29 -2.56 -18.05 16 7 C 0.07 2.13 4.98 86.30 0.43 2.56 16 8 C -0.09 -3.36 5.41 30.59 0.17 -3.20 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 11 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 12 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 13 N -0.94 -57.30 13.29 21.45 0.28 -57.01 16 14 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 18 C -0.17 -4.27 4.36 30.68 0.13 -4.13 16 19 C 0.05 1.23 6.54 72.01 0.47 1.70 16 20 O -0.39 -9.81 10.77 -148.98 -1.60 -11.41 16 21 C 0.06 1.10 6.60 72.01 0.48 1.57 16 22 C -0.13 -2.26 5.16 30.68 0.16 -2.10 16 23 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.42 8.43 8.23 -92.71 -0.76 7.66 16 27 H 0.36 7.42 8.70 -89.69 -0.78 6.64 16 28 H 0.02 0.83 6.32 -2.39 -0.02 0.81 16 29 H 0.05 1.90 6.84 -2.39 -0.02 1.89 16 30 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 33 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 34 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 1.81 6.56 -2.38 -0.02 1.79 16 37 H 0.07 2.26 5.20 -2.38 -0.01 2.25 16 38 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.04 0.84 7.13 -2.39 -0.02 0.82 16 40 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -69.21 329.66 -0.49 -69.70 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.53 Total: 20.90 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 4.44 Total: -11.97 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -4.79 Total: -93.84 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.64 Total: -30.63 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -69.21 -0.49 -69.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119439209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.235 kcal (2) G-P(sol) polarization free energy of solvation -69.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds