Wall clock time and date at job start Mon Mar 30 2020 01:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47200 * 2 1 4 4 H 1.09006 * 109.47368 * 305.00206 * 3 2 1 5 5 N 1.46900 * 109.47128 * 65.00181 * 3 2 1 6 6 C 1.46899 * 111.00075 * 242.71651 * 5 3 2 7 7 C 1.53004 * 109.47243 * 183.93102 * 6 5 3 8 8 H 1.08997 * 109.47009 * 59.99588 * 7 6 5 9 9 O 1.42899 * 109.46897 * 300.00148 * 7 6 5 10 10 C 1.52991 * 109.47178 * 179.97438 * 7 6 5 11 11 N 1.46903 * 109.47079 * 184.99886 * 10 7 6 12 12 C 1.46897 * 111.00006 * 66.04750 * 11 10 7 13 13 C 1.46900 * 111.00090 * 190.00275 * 11 10 7 14 14 C 1.50695 * 109.47359 * 170.00397 * 13 11 10 15 15 H 1.08006 * 119.99872 * 359.97438 * 14 13 11 16 16 C 1.37878 * 120.00159 * 179.97438 * 14 13 11 17 17 N 1.31506 * 120.00223 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00003 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.47029 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47325 * 119.99920 * 18 16 14 21 21 H 1.48500 * 109.47601 * 240.00348 * 18 16 14 22 22 C 1.52998 * 109.47070 * 185.00281 * 3 2 1 23 23 C 1.52997 * 117.49727 * 244.86551 * 22 3 2 24 24 C 1.53005 * 117.49762 * 176.20467 * 22 3 2 25 25 H 1.08997 * 109.47231 * 299.99635 * 1 2 3 26 26 H 1.09005 * 109.47382 * 59.99802 * 1 2 3 27 27 H 1.09005 * 109.47438 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46485 * 240.00383 * 2 1 3 29 29 H 1.08992 * 109.47440 * 120.00570 * 2 1 3 30 30 H 1.00900 * 110.99956 * 6.67225 * 5 3 2 31 31 H 1.09005 * 109.47234 * 63.93228 * 6 5 3 32 32 H 1.09000 * 109.47173 * 303.92966 * 6 5 3 33 33 H 0.96700 * 113.99887 * 299.99996 * 9 7 6 34 34 H 1.09011 * 109.47249 * 64.99967 * 10 7 6 35 35 H 1.08998 * 109.47585 * 305.00467 * 10 7 6 36 36 H 1.08999 * 109.47214 * 183.95193 * 12 11 10 37 37 H 1.09009 * 109.46897 * 63.95191 * 12 11 10 38 38 H 1.09001 * 109.47089 * 303.95835 * 12 11 10 39 39 H 1.09006 * 109.46930 * 290.00221 * 13 11 10 40 40 H 1.09001 * 109.47511 * 49.99878 * 13 11 10 41 41 H 0.97003 * 120.00316 * 179.97438 * 17 16 14 42 42 H 1.08997 * 115.55186 * 30.54072 * 22 3 2 43 43 H 1.09006 * 117.50156 * 0.02562 * 23 22 3 44 44 H 1.08998 * 117.49830 * 145.02505 * 23 22 3 45 45 H 1.08999 * 117.50070 * 214.97719 * 24 22 3 46 46 H 1.08999 * 117.49689 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6514 2.0992 1.2552 6 6 0.7518 3.2321 1.0001 7 6 0.4480 3.9489 2.3173 8 1 1.3771 4.3141 2.7548 9 8 -0.1785 3.0374 3.2221 10 6 -0.4885 5.1291 2.0515 11 7 -0.6847 5.8880 3.2939 12 6 0.5668 6.5251 3.7249 13 6 -1.7556 6.8817 3.1403 14 6 -2.0959 7.4659 4.4871 15 1 -1.5695 7.1320 5.3691 16 6 -3.0791 8.4266 4.5934 17 7 -3.7197 8.8335 3.5194 18 14 -3.5014 9.1501 6.2629 19 1 -2.6435 8.5280 7.3034 20 1 -3.2683 10.6166 6.2403 21 1 -4.9285 8.8805 6.5728 22 6 3.5648 1.4442 -0.1258 23 6 4.3705 1.9855 1.0568 24 6 4.2631 2.8013 -0.2340 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 1.2310 1.4401 1.8931 31 1 -0.1774 2.8668 0.5626 32 1 1.2297 3.9274 0.3100 33 1 -1.0127 2.6717 2.8972 34 1 -1.4500 4.7574 1.6970 35 1 -0.0488 5.7786 1.2946 36 1 0.4107 7.0216 4.6825 37 1 0.8756 7.2595 2.9808 38 1 1.3427 5.7669 3.8308 39 1 -1.4208 7.6765 2.4736 40 1 -2.6389 6.4019 2.7187 41 1 -4.4117 9.5091 3.5942 42 1 3.9912 0.6127 -0.6869 43 1 3.8143 2.3400 1.9247 44 1 5.3273 1.5104 1.2736 45 1 5.1492 2.8625 -0.8658 46 1 3.6362 3.6928 -0.2160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120503813.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:55 Heat of formation + Delta-G solvation = -29.834801 kcal Electronic energy + Delta-G solvation = -21455.136246 eV Core-core repulsion = 18380.234537 eV Total energy + Delta-G solvation = -3074.901709 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.13678 -37.73618 -35.65964 -34.85702 -32.57514 -32.34655 -29.48415 -27.34488 -26.81005 -25.34906 -23.33702 -22.43909 -21.87608 -21.19289 -20.26130 -19.82124 -16.66454 -16.40335 -16.11842 -15.67396 -15.29865 -14.90611 -14.67324 -14.42102 -14.13673 -13.74650 -13.60621 -13.20011 -12.96948 -12.56638 -12.37675 -12.06610 -11.87957 -11.58349 -11.48508 -11.34340 -11.24843 -11.16252 -11.05009 -10.87816 -10.73620 -10.64582 -10.28036 -10.19135 -9.99149 -9.92603 -9.58027 -9.08506 -8.43947 -8.42428 -7.17149 -6.01455 -4.02204 3.32464 3.39703 3.45565 3.73281 4.03709 4.44601 4.49013 4.69679 4.72989 4.83000 4.98207 5.02995 5.04096 5.14447 5.18406 5.31872 5.37206 5.38314 5.47619 5.54304 5.61076 5.64977 5.69190 5.72464 5.77583 5.84453 5.94892 6.00591 6.07488 6.14828 6.21935 6.36120 6.41912 6.45767 6.80270 6.96020 7.28585 7.34405 7.36453 7.82401 7.97698 8.11863 8.22620 8.57547 9.06320 9.62093 11.09623 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.031354 B = 0.003346 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.819948 B = 8365.324701 C = 8750.541074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.138 4.138 3 C 0.114 3.886 4 H 0.065 0.935 5 N -0.676 5.676 6 C 0.028 3.972 7 C 0.115 3.885 8 H 0.103 0.897 9 O -0.545 6.545 10 C 0.025 3.975 11 N -0.529 5.529 12 C 0.037 3.963 13 C 0.192 3.808 14 C -0.504 4.504 15 H 0.065 0.935 16 C 0.053 3.947 17 N -0.901 5.901 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.152 4.152 23 C -0.159 4.159 24 C -0.179 4.179 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.349 0.651 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.365 0.635 34 H 0.067 0.933 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.009 0.991 38 H 0.047 0.953 39 H -0.011 1.011 40 H 0.027 0.973 41 H 0.260 0.740 42 H 0.097 0.903 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.078 -16.268 -9.245 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.176 4.176 3 C 0.004 3.996 4 H 0.083 0.917 5 N -0.308 5.308 6 C -0.102 4.102 7 C 0.055 3.945 8 H 0.121 0.879 9 O -0.349 6.349 10 C -0.105 4.105 11 N -0.253 5.253 12 C -0.112 4.112 13 C 0.067 3.933 14 C -0.542 4.542 15 H 0.083 0.917 16 C -0.147 4.147 17 N -0.541 5.541 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.210 1.210 22 C -0.171 4.171 23 C -0.196 4.196 24 C -0.216 4.216 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.170 0.830 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.211 0.789 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.027 0.973 38 H 0.066 0.934 39 H 0.007 0.993 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.134 0.866 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.866 -15.930 -8.531 22.183 hybrid contribution -1.396 0.572 -0.631 1.635 sum 11.470 -15.358 -9.162 21.245 Atomic orbital electron populations 1.21842 0.95731 1.01940 1.01941 1.22000 0.95891 0.97052 1.02707 1.21060 0.93188 0.93270 0.92067 0.91698 1.60371 1.45489 1.12356 1.12594 1.22779 0.94855 0.93986 0.98589 1.21994 0.96217 0.88076 0.88198 0.87924 1.86616 1.39793 1.62264 1.46194 1.22711 0.99029 0.95832 0.92926 1.62032 1.07000 1.28412 1.27892 1.22249 0.91428 0.96568 1.00911 1.19750 0.88362 0.88058 0.97114 1.21216 1.19025 1.20357 0.93642 0.91730 1.24998 0.96179 0.96736 0.96835 1.69967 1.24833 1.31144 1.28134 0.86438 0.78224 0.78654 0.84099 1.19589 1.21152 1.21029 1.22365 0.93689 0.97160 1.03936 1.22915 1.00081 1.03030 0.93597 1.22833 1.02191 0.94972 1.01622 0.92542 0.92802 0.92456 0.91500 0.91218 0.83020 0.95017 0.90635 0.78942 0.91411 0.95457 0.90851 0.97271 0.93396 0.99329 0.95456 0.93035 0.88503 0.86593 0.90306 0.89817 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.77 37.16 0.36 -0.84 16 2 C -0.14 -1.06 5.18 -26.73 -0.14 -1.20 16 3 C 0.11 1.03 2.55 -67.72 -0.17 0.86 16 4 H 0.06 0.62 7.53 -51.93 -0.39 0.23 16 5 N -0.68 -6.85 4.35 -106.72 -0.46 -7.32 16 6 C 0.03 0.31 5.05 -3.82 -0.02 0.29 16 7 C 0.12 1.63 3.20 -26.73 -0.09 1.54 16 8 H 0.10 1.59 6.26 -51.93 -0.33 1.27 16 9 O -0.55 -8.12 12.70 -35.23 -0.45 -8.57 16 10 C 0.02 0.43 4.60 -3.83 -0.02 0.41 16 11 N -0.53 -11.56 4.70 -244.37 -1.15 -12.71 16 12 C 0.04 0.75 9.17 60.06 0.55 1.30 16 13 C 0.19 5.08 4.72 -4.98 -0.02 5.06 16 14 C -0.50 -14.41 8.51 -34.44 -0.29 -14.70 16 15 H 0.06 1.85 7.10 -52.48 -0.37 1.47 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 18 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.15 -1.40 5.73 -90.62 -0.52 -1.91 16 23 C -0.16 -1.58 9.84 -26.69 -0.26 -1.84 16 24 C -0.18 -1.74 10.22 -26.69 -0.27 -2.01 16 25 H 0.06 0.46 7.09 -51.93 -0.37 0.09 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 30 H 0.35 3.62 6.73 -39.29 -0.26 3.36 16 31 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 33 H 0.36 4.40 9.05 45.56 0.41 4.81 16 34 H 0.07 1.16 7.93 -51.92 -0.41 0.75 16 35 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.07 1.59 6.86 -51.93 -0.36 1.23 16 37 H 0.01 0.18 8.14 -51.92 -0.42 -0.25 16 38 H 0.05 0.84 6.21 -51.93 -0.32 0.52 16 39 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 40 H 0.03 0.77 7.93 -51.93 -0.41 0.35 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.10 0.80 8.08 -51.93 -0.42 0.38 16 43 H 0.12 1.33 6.91 -51.93 -0.36 0.97 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -30.37 363.45 -9.65 -40.01 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.79 Total: 4.11 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -0.99 Total: -11.60 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: -0.88 Total: -46.33 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.45 Total: -8.57 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.37 -9.65 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120503813.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.178 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds