Wall clock time and date at job start Mon Mar 30 2020 00:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99905 * 2 1 4 4 H 1.08996 * 109.47554 * 330.00326 * 3 2 1 5 5 C 1.52997 * 109.46920 * 90.00259 * 3 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.46626 * 299.99539 * 6 5 3 8 8 C 1.52997 * 109.46991 * 60.00378 * 7 6 5 9 9 H 1.09000 * 109.47611 * 59.99933 * 8 7 6 10 10 C 1.50712 * 109.46964 * 179.97438 * 8 7 6 11 11 O 1.21275 * 119.99514 * 120.00126 * 10 8 7 12 12 N 1.34767 * 119.99915 * 299.99685 * 10 8 7 13 13 C 1.46500 * 119.99822 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.47373 * 180.02562 * 13 12 10 15 15 N 1.46497 * 109.47006 * 179.97438 * 14 13 12 16 16 C 1.36939 * 119.99546 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00257 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99919 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99976 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00113 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47235 * 59.99644 * 20 18 16 22 22 H 1.48499 * 109.47266 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47057 * 299.99588 * 20 18 16 24 24 C 1.52996 * 109.47131 * 299.99311 * 8 7 6 25 25 H 1.09000 * 109.47216 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46945 * 299.99922 * 1 2 3 27 27 H 1.09006 * 109.46763 * 59.99892 * 1 2 3 28 28 H 1.09001 * 109.47502 * 60.00157 * 5 3 2 29 29 H 1.09001 * 109.47289 * 299.99954 * 5 3 2 30 30 H 1.08993 * 109.46955 * 60.00011 * 6 5 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.46719 * 180.02562 * 7 6 5 33 33 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 34 34 H 0.97003 * 120.00646 * 0.02562 * 12 10 8 35 35 H 1.09004 * 109.47042 * 300.00297 * 13 12 10 36 36 H 1.09000 * 109.47175 * 60.00338 * 13 12 10 37 37 H 1.08993 * 109.46765 * 300.00338 * 14 13 12 38 38 H 1.09000 * 109.46866 * 59.99938 * 14 13 12 39 39 H 0.96996 * 120.00352 * 359.97438 * 15 14 13 40 40 H 0.96997 * 120.00285 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.47452 * 300.00000 * 24 8 7 42 42 H 1.09000 * 109.47054 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2177 1.7713 1.4425 6 6 2.8394 3.1693 1.4425 7 6 4.1880 3.1276 0.7212 8 6 3.9806 2.6618 -0.7213 9 1 3.3150 3.3555 -1.2351 10 6 5.3089 2.6213 -1.4321 11 8 5.7183 1.5770 -1.8933 12 7 6.0418 3.7456 -1.5553 13 6 7.3333 3.7062 -2.2457 14 6 7.9548 5.1043 -2.2453 15 7 9.2466 5.0646 -2.9352 16 6 9.9917 6.2068 -3.0594 17 1 9.6270 7.1368 -2.6490 18 6 11.2155 6.1694 -3.7135 19 7 11.6598 5.0360 -4.2140 20 14 12.2318 7.7275 -3.8835 21 1 12.5620 8.2528 -2.5343 22 1 13.4868 7.4225 -4.6163 23 1 11.4545 8.7459 -4.6346 24 6 3.3589 1.2638 -0.7214 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.8830 1.0774 1.9563 29 1 1.2569 1.8013 1.9564 30 1 2.1738 3.8629 0.9289 31 1 2.9868 3.5014 2.4702 32 1 4.6312 4.1235 0.7216 33 1 4.8537 2.4340 1.2348 34 1 5.7145 4.5809 -1.1862 35 1 7.9990 3.0128 -1.7317 36 1 7.1859 3.3740 -3.2734 37 1 7.2892 5.7979 -2.7590 38 1 8.1022 5.4360 -1.2175 39 1 9.5743 4.2292 -3.3034 40 1 12.5151 5.0097 -4.6708 41 1 4.0245 0.5701 -0.2078 42 1 3.2115 0.9318 -1.7491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133076220.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:36 Heat of formation + Delta-G solvation = -94.920596 kcal Electronic energy + Delta-G solvation = -20568.757052 eV Core-core repulsion = 17355.199917 eV Total energy + Delta-G solvation = -3213.557135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.33690 -38.77649 -36.50170 -35.64698 -33.83899 -31.59215 -31.02902 -30.29333 -27.65891 -26.75358 -24.28178 -23.03566 -22.64766 -21.45911 -20.64212 -19.81780 -17.60635 -17.14707 -16.46689 -15.84617 -15.49370 -15.39251 -15.28459 -14.77967 -14.53354 -14.33650 -13.84180 -13.49982 -13.32926 -13.18149 -12.90852 -12.70875 -12.48443 -12.05270 -11.67315 -11.40303 -11.37633 -11.11597 -10.99057 -10.85662 -10.80725 -10.79883 -10.76440 -10.15487 -9.90535 -9.78814 -9.52620 -8.97701 -8.80981 -6.99848 -5.79626 -3.10542 2.73569 3.13914 3.42482 3.46190 3.48085 3.55299 4.35528 4.39235 4.56855 4.59241 4.74376 4.81184 4.91980 4.97388 5.04047 5.07843 5.11473 5.20668 5.27372 5.35346 5.49911 5.54966 5.60745 5.65602 5.73996 5.78433 5.82430 5.86998 5.96913 6.03919 6.12302 6.16057 6.50094 6.70483 6.75601 6.92731 7.63569 7.64951 8.34599 8.38330 9.49025 10.03994 10.38688 11.42877 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.051827 B = 0.002711 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.132786 B =10326.067132 C =10693.261527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.090 3.910 4 H 0.060 0.940 5 C -0.143 4.143 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.102 4.102 9 H 0.097 0.903 10 C 0.514 3.486 11 O -0.539 6.539 12 N -0.723 5.723 13 C 0.110 3.890 14 C 0.145 3.855 15 N -0.730 5.730 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C -0.096 4.096 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.399 0.601 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.080 0.920 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.936 -4.928 11.810 27.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.032 3.968 4 H 0.078 0.922 5 C -0.180 4.180 6 C -0.152 4.152 7 C -0.152 4.152 8 C -0.124 4.124 9 H 0.115 0.885 10 C 0.300 3.700 11 O -0.415 6.415 12 N -0.374 5.374 13 C -0.014 4.014 14 C 0.017 3.983 15 N -0.375 5.375 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.134 4.134 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.233 0.767 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.220 0.780 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.435 -5.688 11.462 26.701 hybrid contribution 0.351 1.253 -0.082 1.304 sum -23.084 -4.435 11.380 26.116 Atomic orbital electron populations 1.22782 0.81294 1.02683 0.99815 1.87936 1.19419 1.27845 1.95038 1.22148 0.94878 0.84362 0.95380 0.92154 1.22068 1.01406 0.97356 0.97218 1.21477 0.96233 0.96503 1.00979 1.21589 0.98080 1.02100 0.93469 1.21262 0.94884 0.99177 0.97058 0.88470 1.20462 0.86064 0.83685 0.79829 1.90720 1.71849 1.30414 1.48557 1.45946 1.21527 1.11261 1.58662 1.21581 0.83095 0.99399 0.97292 1.20750 0.88914 0.92463 0.96174 1.42188 1.17516 1.10306 1.67469 1.19146 0.99310 0.88485 1.30655 0.91094 1.24790 0.98031 0.97168 1.00867 1.69658 1.21285 1.24534 1.42402 0.86218 0.79598 0.82402 0.77627 1.21188 1.21605 1.21189 1.21341 0.94635 0.95542 1.01914 0.89708 0.94188 0.94067 0.90836 0.91867 0.91626 0.91076 0.90884 0.90906 0.76733 0.91316 0.91323 0.95858 0.95848 0.77993 0.93289 0.90157 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.94 10.35 -35.23 -0.36 -4.31 16 3 C 0.09 0.80 2.61 -26.73 -0.07 0.73 16 4 H 0.06 0.46 7.79 -51.93 -0.40 0.05 16 5 C -0.14 -1.07 5.54 -26.73 -0.15 -1.22 16 6 C -0.11 -0.74 5.92 -26.73 -0.16 -0.89 16 7 C -0.11 -0.91 5.10 -26.73 -0.14 -1.05 16 8 C -0.10 -1.00 2.53 -91.77 -0.23 -1.23 16 9 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 10 C 0.51 7.21 7.15 -10.98 -0.08 7.13 16 11 O -0.54 -9.97 15.98 5.56 0.09 -9.88 16 12 N -0.72 -9.72 5.45 -60.29 -0.33 -10.04 16 13 C 0.11 1.90 5.79 -4.04 -0.02 1.88 16 14 C 0.15 2.84 6.37 -4.04 -0.03 2.82 16 15 N -0.73 -18.65 5.60 -59.91 -0.34 -18.99 16 16 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 17 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 C -0.10 -1.04 4.15 -26.73 -0.11 -1.15 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.22 7.87 -51.93 -0.41 -0.18 16 27 H 0.04 0.25 8.09 -51.93 -0.42 -0.17 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.41 7.87 -51.93 -0.41 0.01 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.51 7.56 -51.93 -0.39 0.11 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.40 4.15 7.89 -40.82 -0.32 3.83 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.39 10.47 7.67 -40.82 -0.31 10.16 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 42 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -33.56 341.28 -7.52 -41.08 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.28 Total: 6.51 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -0.14 Total: 0.86 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.06 Total: -56.71 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.28 Total: -14.19 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.56 -7.52 -41.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133076220.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.840 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds