Wall clock time and date at job start Mon Mar 30 2020 00:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99905 * 2 1 4 4 H 1.08996 * 109.47554 * 330.00326 * 3 2 1 5 5 C 1.52997 * 109.46920 * 90.00259 * 3 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.46626 * 299.99539 * 6 5 3 8 8 C 1.52997 * 109.46991 * 60.00378 * 7 6 5 9 9 H 1.09000 * 109.47611 * 59.99933 * 8 7 6 10 10 C 1.50712 * 109.46964 * 179.97438 * 8 7 6 11 11 O 1.21275 * 119.99514 * 120.00126 * 10 8 7 12 12 N 1.34767 * 119.99915 * 299.99685 * 10 8 7 13 13 C 1.46500 * 119.99822 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.47373 * 180.02562 * 13 12 10 15 15 N 1.46497 * 109.47006 * 179.97438 * 14 13 12 16 16 C 1.36939 * 119.99546 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00257 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99919 * 180.02562 * 16 15 14 19 19 N 1.31622 * 119.99976 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00113 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47235 * 59.99644 * 20 18 16 22 22 H 1.48499 * 109.47266 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47057 * 299.99588 * 20 18 16 24 24 C 1.52996 * 109.47131 * 299.99311 * 8 7 6 25 25 H 1.09000 * 109.47216 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46945 * 299.99922 * 1 2 3 27 27 H 1.09006 * 109.46763 * 59.99892 * 1 2 3 28 28 H 1.09001 * 109.47502 * 60.00157 * 5 3 2 29 29 H 1.09001 * 109.47289 * 299.99954 * 5 3 2 30 30 H 1.08993 * 109.46955 * 60.00011 * 6 5 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.46719 * 180.02562 * 7 6 5 33 33 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 34 34 H 0.97003 * 120.00646 * 0.02562 * 12 10 8 35 35 H 1.09004 * 109.47042 * 300.00297 * 13 12 10 36 36 H 1.09000 * 109.47175 * 60.00338 * 13 12 10 37 37 H 1.08993 * 109.46765 * 300.00338 * 14 13 12 38 38 H 1.09000 * 109.46866 * 59.99938 * 14 13 12 39 39 H 0.96996 * 120.00352 * 359.97438 * 15 14 13 40 40 H 0.96997 * 120.00285 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.47452 * 300.00000 * 24 8 7 42 42 H 1.09000 * 109.47054 * 180.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2177 1.7713 1.4425 6 6 2.8394 3.1693 1.4425 7 6 4.1880 3.1276 0.7212 8 6 3.9806 2.6618 -0.7213 9 1 3.3150 3.3555 -1.2351 10 6 5.3089 2.6213 -1.4321 11 8 5.7183 1.5770 -1.8933 12 7 6.0418 3.7456 -1.5553 13 6 7.3333 3.7062 -2.2457 14 6 7.9548 5.1043 -2.2453 15 7 9.2466 5.0646 -2.9352 16 6 9.9917 6.2068 -3.0594 17 1 9.6270 7.1368 -2.6490 18 6 11.2155 6.1694 -3.7135 19 7 11.6598 5.0360 -4.2140 20 14 12.2318 7.7275 -3.8835 21 1 12.5620 8.2528 -2.5343 22 1 13.4868 7.4225 -4.6163 23 1 11.4545 8.7459 -4.6346 24 6 3.3589 1.2638 -0.7214 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.8830 1.0774 1.9563 29 1 1.2569 1.8013 1.9564 30 1 2.1738 3.8629 0.9289 31 1 2.9868 3.5014 2.4702 32 1 4.6312 4.1235 0.7216 33 1 4.8537 2.4340 1.2348 34 1 5.7145 4.5809 -1.1862 35 1 7.9990 3.0128 -1.7317 36 1 7.1859 3.3740 -3.2734 37 1 7.2892 5.7979 -2.7590 38 1 8.1022 5.4360 -1.2175 39 1 9.5743 4.2292 -3.3034 40 1 12.5151 5.0097 -4.6708 41 1 4.0245 0.5701 -0.2078 42 1 3.2115 0.9318 -1.7491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133076220.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:35 Heat of formation + Delta-G solvation = -119.580080 kcal Electronic energy + Delta-G solvation = -20569.826368 eV Core-core repulsion = 17355.199917 eV Total energy + Delta-G solvation = -3214.626451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.33602 -39.64639 -37.45181 -37.06743 -35.51279 -33.22440 -32.04780 -31.09290 -29.27188 -27.30957 -25.87640 -24.35190 -23.31825 -23.00883 -21.52325 -20.73992 -19.33401 -18.40968 -17.36118 -16.86391 -16.69633 -16.49374 -16.30838 -16.00994 -15.68579 -15.25485 -15.19208 -14.99565 -14.54360 -14.48488 -14.07961 -13.47651 -13.24023 -13.05729 -13.02871 -12.64485 -12.60257 -12.53659 -12.37038 -12.12361 -12.03099 -11.86511 -11.65570 -11.47633 -11.46975 -10.97921 -10.86698 -10.37600 -10.14377 -9.07152 -7.96857 -5.28613 1.48365 1.52335 1.58458 1.60231 2.05254 2.57467 2.84295 3.37148 3.53040 3.70667 3.89256 3.99474 4.08044 4.13729 4.15691 4.21958 4.25201 4.35553 4.43097 4.45518 4.54566 4.57520 4.59395 4.65767 4.87492 4.99244 5.02724 5.07367 5.11812 5.13166 5.18039 5.23519 5.30024 5.38943 5.45803 5.48954 6.23620 6.32522 6.54435 7.23924 7.29670 8.01764 8.24527 9.26698 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.051827 B = 0.002711 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.132786 B =10326.067132 C =10693.261527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.092 3.908 4 H 0.081 0.919 5 C -0.140 4.140 6 C -0.107 4.107 7 C -0.113 4.113 8 C -0.089 4.089 9 H 0.129 0.871 10 C 0.511 3.489 11 O -0.590 6.590 12 N -0.708 5.708 13 C 0.126 3.874 14 C 0.150 3.850 15 N -0.748 5.748 16 C -0.249 4.249 17 H 0.084 0.916 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.981 3.019 21 H -0.275 1.275 22 H -0.298 1.298 23 H -0.274 1.274 24 C -0.096 4.096 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.418 0.582 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.373 0.627 40 H 0.252 0.748 41 H 0.051 0.949 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.060 -2.545 13.192 29.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.035 3.965 4 H 0.099 0.901 5 C -0.178 4.178 6 C -0.145 4.145 7 C -0.151 4.151 8 C -0.110 4.110 9 H 0.147 0.853 10 C 0.299 3.701 11 O -0.470 6.470 12 N -0.361 5.361 13 C 0.001 3.999 14 C 0.023 3.977 15 N -0.392 5.392 16 C -0.380 4.380 17 H 0.102 0.898 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.809 3.191 21 H -0.200 1.200 22 H -0.224 1.224 23 H -0.200 1.200 24 C -0.134 4.134 25 H 0.109 0.891 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.255 0.745 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.204 0.796 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -25.628 -3.253 12.893 28.872 hybrid contribution 0.925 0.444 -0.489 1.136 sum -24.703 -2.809 12.404 27.785 Atomic orbital electron populations 1.22966 0.79578 1.03611 1.00962 1.87898 1.21426 1.28872 1.95254 1.22169 0.93716 0.84421 0.96223 0.90116 1.22052 1.01950 0.97735 0.96065 1.21467 0.95184 0.96044 1.01776 1.21624 0.99215 1.02422 0.91808 1.21264 0.92339 0.99279 0.98156 0.85282 1.21308 0.87185 0.82694 0.78951 1.90704 1.73254 1.32343 1.50720 1.45737 1.19997 1.12291 1.58046 1.21141 0.84510 0.97685 0.96537 1.20848 0.86795 0.93802 0.96233 1.42445 1.19444 1.09238 1.68052 1.19628 0.99434 0.89533 1.29427 0.89784 1.25708 0.99637 1.00364 1.01390 1.69837 1.21566 1.26873 1.43947 0.85107 0.77484 0.78659 0.77848 1.20040 1.22389 1.20024 1.21299 0.95772 0.95641 1.00674 0.89081 0.92675 0.93175 0.92527 0.90328 0.89529 0.89736 0.89082 0.92647 0.74454 0.93186 0.93104 0.94323 0.94332 0.79550 0.93907 0.92969 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.52 16 2 O -0.41 -8.25 10.35 -148.98 -1.54 -9.80 16 3 C 0.09 1.49 2.61 30.59 0.08 1.57 16 4 H 0.08 0.97 7.79 -2.39 -0.02 0.95 16 5 C -0.14 -1.79 5.54 30.60 0.17 -1.62 16 6 C -0.11 -1.00 5.92 30.60 0.18 -0.82 16 7 C -0.11 -1.52 5.10 30.59 0.16 -1.37 16 8 C -0.09 -1.60 2.53 -11.54 -0.03 -1.63 16 9 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 10 C 0.51 14.15 7.15 87.66 0.63 14.77 16 11 O -0.59 -22.69 15.98 -3.01 -0.05 -22.74 16 12 N -0.71 -18.11 5.45 -463.05 -2.52 -20.64 16 13 C 0.13 4.37 5.79 86.38 0.50 4.87 16 14 C 0.15 5.68 6.37 86.38 0.55 6.23 16 15 N -0.75 -38.28 5.60 -343.45 -1.92 -40.21 16 16 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 17 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 18 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 19 N -0.97 -60.38 13.06 21.65 0.28 -60.10 16 20 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C -0.10 -2.07 4.15 30.59 0.13 -1.94 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.49 7.87 -2.39 -0.02 0.47 16 27 H 0.05 0.50 8.09 -2.38 -0.02 0.48 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.78 7.87 -2.39 -0.02 0.77 16 30 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.92 7.56 -2.39 -0.02 0.91 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.42 7.47 7.89 -92.71 -0.73 6.74 16 35 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.37 20.75 7.67 -92.71 -0.71 20.04 16 40 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.05 1.39 8.10 -2.39 -0.02 1.38 16 42 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 Total: -1.00 -74.38 341.28 0.73 -73.65 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.44 Total: 27.48 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 4.89 Total: 4.61 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -4.16 Total: -120.94 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -1.59 Total: -32.53 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -74.38 0.73 -73.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133076220.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.928 kcal (2) G-P(sol) polarization free energy of solvation -74.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds