Wall clock time and date at job start Mon Mar 30 2020 00:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00097 * 2 1 4 4 H 1.09002 * 109.46992 * 30.00636 * 3 2 1 5 5 C 1.53000 * 109.47660 * 270.00135 * 3 2 1 6 6 C 1.52994 * 109.47517 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46903 * 60.00006 * 6 5 3 8 8 C 1.52997 * 109.47542 * 300.00287 * 7 6 5 9 9 C 1.53002 * 109.46937 * 150.00033 * 3 2 1 10 10 H 1.09002 * 109.46787 * 60.00478 * 9 3 2 11 11 C 1.50700 * 109.47331 * 300.00386 * 9 3 2 12 12 O 1.21284 * 119.99701 * 359.97438 * 11 9 3 13 13 N 1.34774 * 119.99956 * 179.97438 * 11 9 3 14 14 C 1.46499 * 119.99966 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.47341 * 180.02562 * 14 13 11 16 16 N 1.46494 * 109.47008 * 180.02562 * 15 14 13 17 17 C 1.36945 * 119.99612 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00077 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99637 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00227 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99854 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46819 * 59.99973 * 21 19 17 23 23 H 1.48494 * 109.47285 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47086 * 300.00269 * 21 19 17 25 25 H 1.09002 * 109.46789 * 300.00111 * 1 2 3 26 26 H 1.09000 * 109.47228 * 59.99512 * 1 2 3 27 27 H 1.08996 * 109.47437 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46856 * 59.99585 * 5 3 2 29 29 H 1.08997 * 109.46945 * 300.00545 * 5 3 2 30 30 H 1.09002 * 109.47168 * 300.00521 * 6 5 3 31 31 H 1.08996 * 109.46912 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.47244 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.46787 * 60.00282 * 7 6 5 34 34 H 1.09004 * 109.46747 * 300.00235 * 8 7 6 35 35 H 1.08996 * 109.47778 * 179.97438 * 8 7 6 36 36 H 0.96999 * 120.00050 * 0.02562 * 13 11 9 37 37 H 1.09005 * 109.47136 * 59.99929 * 14 13 11 38 38 H 1.09004 * 109.47024 * 300.00313 * 14 13 11 39 39 H 1.08995 * 109.46742 * 59.99490 * 15 14 13 40 40 H 1.09002 * 109.46787 * 300.00211 * 15 14 13 41 41 H 0.96995 * 120.00290 * 0.27040 * 16 15 14 42 42 H 0.97005 * 120.00046 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7715 -1.4425 6 6 2.8394 3.1694 -1.4424 7 6 4.1880 3.1277 -0.7210 8 6 3.9807 2.6617 0.7215 9 6 3.3589 1.2632 0.7213 10 1 4.0241 0.5693 0.2073 11 6 3.1547 0.8042 2.1421 12 8 2.0400 0.5376 2.5388 13 7 4.2106 0.6899 2.9717 14 6 4.0120 0.2443 4.3531 15 6 5.3607 0.2019 5.0743 16 7 5.1620 -0.2444 6.4554 17 6 6.2348 -0.3596 7.2987 18 1 7.2274 -0.1218 6.9454 19 6 6.0466 -0.7819 8.6075 20 7 4.8371 -1.0721 9.0379 21 14 7.5100 -0.9397 9.7577 22 1 8.1733 0.3814 9.8988 23 1 7.0453 -1.4045 11.0892 24 1 8.4748 -1.9209 9.1993 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.2568 1.8015 -1.9563 29 1 2.8829 1.0776 -1.9563 30 1 2.1739 3.8631 -0.9286 31 1 2.9868 3.5015 -2.4700 32 1 4.6312 4.1235 -0.7213 33 1 4.8536 2.4341 -1.2348 34 1 3.3151 3.3554 1.2352 35 1 4.9415 2.6316 1.2353 36 1 5.1020 0.9035 2.6545 37 1 3.5679 -0.7512 4.3534 38 1 3.3472 0.9387 4.8669 39 1 5.8043 1.1975 5.0739 40 1 6.0257 -0.4924 4.5605 41 1 4.2711 -0.4617 6.7715 42 1 4.7056 -1.3676 9.9524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153106230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:58 Heat of formation + Delta-G solvation = -92.828734 kcal Electronic energy + Delta-G solvation = -21014.481959 eV Core-core repulsion = 17801.015534 eV Total energy + Delta-G solvation = -3213.466425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37254 -38.28595 -36.50070 -35.57979 -33.77100 -31.76853 -30.85358 -30.20555 -27.64664 -26.45708 -24.18867 -23.16649 -22.41809 -21.41238 -20.54976 -19.84976 -17.46284 -16.97316 -16.71461 -15.90480 -15.31920 -15.19960 -14.95552 -14.49858 -14.39912 -14.17776 -13.92180 -13.57956 -13.23843 -13.13724 -12.99859 -12.62377 -12.38556 -11.88104 -11.59184 -11.36297 -11.28950 -11.11380 -11.06666 -10.84645 -10.79424 -10.77694 -10.59057 -10.13585 -9.80120 -9.64728 -9.37929 -8.94377 -8.74225 -6.97804 -5.78057 -3.08758 2.84738 3.32335 3.43679 3.48061 3.49482 3.64837 4.33803 4.41377 4.60002 4.62638 4.85707 4.92096 5.01551 5.02481 5.09965 5.15463 5.26176 5.40917 5.49517 5.51976 5.52746 5.61678 5.68318 5.71291 5.75899 5.78571 5.81279 5.83212 5.91815 6.00534 6.06530 6.19813 6.55620 6.74164 6.81256 7.17893 7.66524 7.72179 8.39368 8.45593 9.50715 10.06019 10.40804 11.44524 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034024 B = 0.003198 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.755215 B = 8754.296328 C = 9410.322000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.374 6.374 3 C 0.111 3.889 4 H 0.066 0.934 5 C -0.141 4.141 6 C -0.119 4.119 7 C -0.120 4.120 8 C -0.110 4.110 9 C -0.105 4.105 10 H 0.103 0.897 11 C 0.517 3.483 12 O -0.532 6.532 13 N -0.725 5.725 14 C 0.112 3.888 15 C 0.145 3.855 16 N -0.730 5.730 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 H 0.046 0.954 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.398 0.602 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.386 0.614 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.296 8.634 -23.877 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.292 6.292 3 C 0.053 3.947 4 H 0.084 0.916 5 C -0.179 4.179 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.148 4.148 9 C -0.126 4.126 10 H 0.121 0.879 11 C 0.302 3.698 12 O -0.408 6.408 13 N -0.377 5.377 14 C -0.012 4.012 15 C 0.017 3.983 16 N -0.375 5.375 17 C -0.376 4.376 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.231 0.769 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.220 0.780 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.847 8.259 -23.481 25.358 hybrid contribution 0.742 0.058 0.668 1.000 sum -4.105 8.317 -22.812 24.626 Atomic orbital electron populations 1.22679 0.81117 1.02438 0.99515 1.87886 1.19685 1.26808 1.94835 1.21774 0.93192 0.85654 0.94127 0.91624 1.22067 1.01566 0.97164 0.97097 1.21522 0.96820 0.96574 1.00741 1.21565 0.97395 1.01724 0.95044 1.21550 1.01277 0.94210 0.97793 1.21487 0.98537 0.99024 0.93584 0.87887 1.20367 0.84752 0.77651 0.86987 1.90689 1.23969 1.49166 1.76952 1.45939 1.10021 1.68930 1.12807 1.21541 0.99184 1.00266 0.80183 1.20753 0.92959 0.97386 0.87221 1.42190 1.08361 1.80741 1.06185 1.19157 0.88149 1.38370 0.91895 0.91089 1.24778 0.96672 1.01989 0.97384 1.69660 1.19772 1.51490 1.17008 0.86222 0.81662 0.77804 0.80196 1.21194 1.21613 1.21183 0.93579 0.94874 0.90032 0.91603 0.90979 0.91790 0.91524 0.91284 0.91438 0.91080 0.90547 0.76874 0.91418 0.91480 0.95853 0.95876 0.78012 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.82 101.05 1.09 1.52 16 2 O -0.37 -5.01 9.25 -53.49 -0.49 -5.51 16 3 C 0.11 1.23 1.59 -26.73 -0.04 1.18 16 4 H 0.07 0.77 7.74 -51.93 -0.40 0.37 16 5 C -0.14 -1.15 5.54 -26.73 -0.15 -1.30 16 6 C -0.12 -0.79 5.92 -26.73 -0.16 -0.94 16 7 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 8 C -0.11 -0.90 5.10 -26.71 -0.14 -1.04 16 9 C -0.10 -1.13 2.27 -91.74 -0.21 -1.33 16 10 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 11 C 0.52 7.66 7.01 -10.99 -0.08 7.58 16 12 O -0.53 -10.01 15.28 -12.70 -0.19 -10.20 16 13 N -0.73 -10.27 5.45 -60.29 -0.33 -10.59 16 14 C 0.11 2.00 5.79 -4.04 -0.02 1.97 16 15 C 0.15 2.90 6.37 -4.04 -0.03 2.88 16 16 N -0.73 -18.88 5.60 -59.91 -0.34 -19.22 16 17 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 21 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H 0.05 0.55 8.08 -51.93 -0.42 0.13 16 26 H 0.03 0.29 7.87 -51.93 -0.41 -0.12 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.50 7.87 -51.92 -0.41 0.10 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.55 7.57 -51.93 -0.39 0.16 16 36 H 0.40 4.44 7.89 -40.82 -0.32 4.12 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.39 10.58 7.67 -40.82 -0.31 10.27 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 339.88 15.07 5.12 5.12 Total: -1.00 -33.70 339.88 -7.95 -41.65 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.29 Total: 7.09 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -0.13 Total: 2.08 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.06 Total: -57.66 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.69 Total: -15.71 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.70 -7.95 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153106230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.179 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds