Wall clock time and date at job start Mon Mar 30 2020 00:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99798 * 2 1 4 4 C 1.53003 * 112.85123 * 294.68636 * 3 2 1 5 5 C 1.50703 * 109.47124 * 291.09959 * 4 3 2 6 6 O 1.21283 * 119.99708 * 355.50915 * 5 4 3 7 7 N 1.34770 * 120.00446 * 175.78251 * 5 4 3 8 8 C 1.46497 * 120.00419 * 179.72905 * 7 5 4 9 9 C 1.52997 * 109.47314 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.47168 * 179.97438 * 9 8 7 11 11 N 1.46499 * 109.47147 * 179.97438 * 10 9 8 12 12 C 1.36934 * 120.00081 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00000 * 0.02562 * 12 11 10 14 14 C 1.38814 * 119.99986 * 179.97438 * 12 11 10 15 15 N 1.31622 * 120.00153 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99942 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47228 * 89.99779 * 16 14 12 18 18 H 1.48503 * 109.47083 * 209.99832 * 16 14 12 19 19 H 1.48506 * 109.47263 * 329.99828 * 16 14 12 20 20 C 1.53782 * 113.69158 * 65.95152 * 3 2 1 21 21 C 1.53780 * 87.07932 * 89.12761 * 20 3 2 22 22 C 1.53773 * 87.08086 * 25.43454 * 21 20 3 23 23 H 1.09003 * 109.47070 * 296.02798 * 1 2 3 24 24 H 1.08996 * 109.47568 * 56.03096 * 1 2 3 25 25 H 1.08995 * 109.46805 * 176.03265 * 1 2 3 26 26 H 1.09001 * 109.47278 * 171.10135 * 4 3 2 27 27 H 1.08997 * 109.47239 * 51.10137 * 4 3 2 28 28 H 0.97006 * 119.99876 * 359.72344 * 7 5 4 29 29 H 1.09002 * 109.46670 * 299.99895 * 8 7 5 30 30 H 1.09000 * 109.47226 * 59.99636 * 8 7 5 31 31 H 1.09002 * 109.47049 * 299.99519 * 9 8 7 32 32 H 1.09000 * 109.47389 * 59.99592 * 9 8 7 33 33 H 1.09002 * 109.46828 * 299.99759 * 10 9 8 34 34 H 1.08993 * 109.46920 * 59.99892 * 10 9 8 35 35 H 0.97000 * 119.99676 * 359.97438 * 11 10 9 36 36 H 0.97000 * 120.00220 * 179.97438 * 15 14 12 37 37 H 1.09005 * 113.61893 * 203.67644 * 20 3 2 38 38 H 1.09003 * 113.61264 * 334.57846 * 20 3 2 39 39 H 1.09002 * 113.61128 * 270.88228 * 21 20 3 40 40 H 1.09005 * 113.61045 * 139.98307 * 21 20 3 41 41 H 1.09004 * 113.61287 * 220.01490 * 22 21 20 42 42 H 1.09007 * 113.61548 * 89.11764 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7139 2.0878 -1.2811 5 6 2.4494 1.4579 -2.4358 6 8 3.2059 0.5305 -2.2394 7 7 2.2709 1.9287 -3.6859 8 6 2.9905 1.3203 -4.8076 9 6 2.6117 2.0367 -6.1053 10 6 3.3637 1.4016 -7.2767 11 7 3.0006 2.0873 -8.5194 12 6 3.5534 1.6897 -9.7074 13 1 4.2568 0.8705 -9.7284 14 6 3.2089 2.3390 -10.8850 15 7 2.3505 3.3365 -10.8597 16 14 3.9625 1.7963 -12.5057 17 1 3.1076 0.7510 -13.1237 18 1 4.0596 2.9615 -13.4213 19 1 5.3195 1.2449 -12.2607 20 6 1.7372 2.1034 1.2860 21 6 3.0201 1.4744 1.8548 22 6 3.4948 1.3189 0.4005 23 1 -0.3633 0.4510 0.9235 24 1 -0.3634 0.5742 -0.8522 25 1 -0.3633 -1.0252 -0.0711 26 1 2.0425 3.1201 -1.1607 27 1 0.6422 2.0684 -1.4790 28 1 1.6658 2.6705 -3.8430 29 1 4.0641 1.4114 -4.6427 30 1 2.7225 0.2664 -4.8824 31 1 1.5381 1.9460 -6.2704 32 1 2.8800 3.0905 -6.0303 33 1 4.4373 1.4927 -7.1114 34 1 3.0958 0.3478 -7.3519 35 1 2.3685 2.8228 -8.5006 36 1 2.1100 3.7905 -11.6825 37 1 1.8026 3.1832 1.1521 38 1 0.8312 1.7946 1.8074 39 1 2.8524 0.5249 2.3634 40 1 3.6242 2.1681 2.4396 41 1 4.0078 0.3768 0.2070 42 1 4.0408 2.1842 0.0245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157160271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:17 Heat of formation + Delta-G solvation = -80.812431 kcal Electronic energy + Delta-G solvation = -20483.828859 eV Core-core repulsion = 17270.883500 eV Total energy + Delta-G solvation = -3212.945359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.46414 -39.85865 -37.47439 -36.50376 -35.84481 -33.78995 -31.99314 -30.59908 -27.97625 -26.98291 -26.34474 -24.77712 -23.64389 -22.58021 -21.29266 -20.35411 -19.20374 -17.96791 -17.52989 -17.09935 -16.80912 -16.62591 -16.16783 -16.00443 -15.65888 -15.31581 -15.04831 -15.04459 -14.71796 -14.37452 -13.95487 -13.31032 -13.24303 -13.04567 -12.81904 -12.62776 -12.52359 -12.43670 -12.26446 -12.08494 -12.04828 -11.93384 -11.80414 -11.67336 -11.10840 -10.96147 -10.77495 -10.29611 -10.05353 -9.03754 -7.98086 -5.27436 1.47070 1.48810 1.57466 1.72741 2.19162 2.55464 2.80874 3.35722 3.49091 3.68381 3.71675 3.76787 3.95187 4.07126 4.10893 4.28250 4.35025 4.40268 4.47200 4.50274 4.59053 4.64995 4.72410 4.72817 4.80648 4.85527 4.89323 4.91330 5.07061 5.20339 5.27605 5.28601 5.30170 5.41989 5.47057 5.48207 6.24850 6.38944 6.62141 7.31186 7.34129 8.05423 8.29801 9.25489 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.051183 B = 0.002525 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.926895 B =11085.811020 C =11158.883379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.384 6.384 3 C 0.097 3.903 4 C -0.154 4.154 5 C 0.506 3.494 6 O -0.572 6.572 7 N -0.723 5.723 8 C 0.135 3.865 9 C -0.117 4.117 10 C 0.152 3.848 11 N -0.747 5.747 12 C -0.251 4.251 13 H 0.074 0.926 14 C -0.075 4.075 15 N -0.969 5.969 16 Si 0.975 3.025 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.270 1.270 20 C -0.148 4.148 21 C -0.135 4.135 22 C -0.122 4.122 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.135 0.865 27 H 0.115 0.885 28 H 0.414 0.586 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.021 0.979 34 H 0.020 0.980 35 H 0.376 0.624 36 H 0.253 0.747 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 0.588 27.357 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.303 6.303 3 C 0.057 3.943 4 C -0.194 4.194 5 C 0.294 3.706 6 O -0.450 6.450 7 N -0.376 5.376 8 C 0.010 3.990 9 C -0.155 4.155 10 C 0.025 3.975 11 N -0.390 5.390 12 C -0.382 4.382 13 H 0.092 0.908 14 C -0.267 4.267 15 N -0.619 5.619 16 Si 0.804 3.196 17 H -0.213 1.213 18 H -0.219 1.219 19 H -0.195 1.195 20 C -0.186 4.186 21 C -0.173 4.173 22 C -0.159 4.159 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.153 0.847 27 H 0.133 0.867 28 H 0.251 0.749 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.208 0.792 36 H 0.062 0.938 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.249 -0.361 27.396 27.726 hybrid contribution -0.279 0.287 -1.430 1.485 sum -4.528 -0.074 25.966 26.357 Atomic orbital electron populations 1.22930 0.80278 1.03334 1.01139 1.87996 1.20791 1.26740 1.94806 1.22418 0.95674 0.83581 0.92663 1.22286 1.02785 1.02220 0.92078 1.21152 0.82012 0.82978 0.84459 1.90716 1.39010 1.30190 1.85100 1.45997 1.47487 1.37684 1.06426 1.21011 0.96428 0.96822 0.84749 1.21690 1.01061 1.00369 0.92375 1.20678 0.96695 0.94883 0.85265 1.42541 1.53376 1.40273 1.02796 1.19644 1.19546 1.12698 0.86342 0.90805 1.25596 1.00851 0.98947 1.01328 1.69804 1.38593 1.26038 1.27484 0.85115 0.78265 0.76831 0.79396 1.21271 1.21874 1.19532 1.23543 0.98903 1.01075 0.95033 1.22789 0.97574 1.01231 0.95675 1.22916 0.94354 1.02050 0.96592 0.92117 0.93272 0.89521 0.84688 0.86691 0.74897 0.92300 0.92674 0.90819 0.90617 0.96089 0.96242 0.79189 0.93832 0.86783 0.90098 0.90894 0.89686 0.93307 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.63 113.37 1.20 1.49 16 2 O -0.38 -8.83 10.29 -147.41 -1.52 -10.35 16 3 C 0.10 1.73 0.39 -10.27 0.00 1.72 16 4 C -0.15 -2.27 5.15 29.85 0.15 -2.12 16 5 C 0.51 12.10 7.63 87.66 0.67 12.76 16 6 O -0.57 -19.14 14.70 -1.47 -0.02 -19.17 16 7 N -0.72 -15.57 5.56 -463.07 -2.57 -18.14 16 8 C 0.13 3.66 5.67 86.38 0.49 4.15 16 9 C -0.12 -3.48 5.44 30.60 0.17 -3.32 16 10 C 0.15 6.09 6.26 86.38 0.54 6.63 16 11 N -0.75 -38.36 5.60 -343.46 -1.92 -40.29 16 12 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 13 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 14 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 15 N -0.97 -59.21 13.06 21.65 0.28 -58.93 16 16 Si 0.98 46.36 29.55 68.60 2.03 48.38 16 17 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 18 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 C -0.15 -1.68 7.21 31.12 0.22 -1.45 16 21 C -0.14 -1.95 8.02 31.12 0.25 -1.70 16 22 C -0.12 -2.42 6.07 31.12 0.19 -2.23 16 23 H 0.06 0.65 6.85 -2.39 -0.02 0.64 16 24 H 0.05 0.64 6.50 -2.39 -0.02 0.62 16 25 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.14 1.17 7.99 -2.39 -0.02 1.15 16 27 H 0.12 1.22 6.55 -2.39 -0.02 1.20 16 28 H 0.41 6.31 8.47 -92.70 -0.79 5.52 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.38 20.10 7.67 -92.71 -0.71 19.38 16 36 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.11 0.77 8.00 -2.38 -0.02 0.75 16 38 H 0.08 0.81 6.81 -2.39 -0.02 0.79 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 40 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.05 1.30 7.98 -2.39 -0.02 1.28 16 42 H 0.10 1.68 8.10 -2.38 -0.02 1.66 16 Total: -1.00 -74.41 342.37 0.98 -73.43 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: -0.48 Total: 26.40 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 5.19 Total: -1.34 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -4.21 Total: -117.36 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -1.54 Total: -29.51 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -74.41 0.98 -73.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157160271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.381 kcal (2) G-P(sol) polarization free energy of solvation -74.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds