Wall clock time and date at job start Mon Mar 30 2020 00:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99712 * 2 1 4 4 C 1.53007 * 109.46841 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46591 * 175.86840 * 4 3 2 6 6 C 1.50694 * 115.55206 * 294.74914 * 5 4 3 7 7 O 1.21281 * 120.00063 * 123.34294 * 6 5 4 8 8 N 1.34780 * 120.00093 * 303.06373 * 6 5 4 9 9 C 1.46501 * 120.00106 * 175.29187 * 8 6 5 10 10 C 1.53003 * 109.46927 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47100 * 179.97438 * 10 9 8 12 12 N 1.46493 * 109.47505 * 179.97438 * 11 10 9 13 13 C 1.36937 * 120.00418 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99892 * 180.02562 * 13 12 11 16 16 N 1.31610 * 120.00522 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99745 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47075 * 59.99791 * 17 15 13 19 19 H 1.48500 * 109.47167 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47215 * 299.99697 * 17 15 13 21 21 C 1.52998 * 117.49783 * 80.42259 * 5 4 3 22 22 C 1.53001 * 117.49268 * 149.08138 * 5 4 3 23 23 H 1.08992 * 109.47208 * 60.00344 * 1 2 3 24 24 H 1.09005 * 109.46670 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47285 * 299.99806 * 1 2 3 26 26 H 1.09000 * 109.47329 * 60.00021 * 3 2 1 27 27 H 1.08996 * 109.47158 * 299.99592 * 3 2 1 28 28 H 1.08996 * 109.46922 * 55.87254 * 4 3 2 29 29 H 1.08993 * 109.47332 * 295.86858 * 4 3 2 30 30 H 0.97002 * 119.99952 * 355.28811 * 8 6 5 31 31 H 1.08999 * 109.46751 * 299.99825 * 9 8 6 32 32 H 1.08990 * 109.47357 * 60.00036 * 9 8 6 33 33 H 1.08999 * 109.47054 * 299.99384 * 10 9 8 34 34 H 1.08997 * 109.47633 * 59.99575 * 10 9 8 35 35 H 1.09008 * 109.47167 * 300.00061 * 11 10 9 36 36 H 1.09004 * 109.47199 * 59.99740 * 11 10 9 37 37 H 0.97006 * 119.99772 * 359.97438 * 12 11 10 38 38 H 0.97006 * 120.00346 * 180.02562 * 16 15 13 39 39 H 1.09000 * 117.49860 * 214.99683 * 21 5 4 40 40 H 1.08997 * 117.50215 * 0.02562 * 21 5 4 41 41 H 1.08996 * 117.50228 * 359.97438 * 22 5 4 42 42 H 1.09001 * 117.49350 * 144.97547 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1574 2.5788 -0.1033 6 6 3.8951 3.3131 -1.3928 7 8 3.3716 4.4069 -1.3721 8 7 4.2473 2.7567 -2.5688 9 6 3.9002 3.4220 -3.8271 10 6 4.4115 2.5874 -5.0031 11 6 4.0484 3.2818 -6.3172 12 7 4.5385 2.4832 -7.4433 13 6 4.3292 2.9096 -8.7276 14 1 3.8025 3.8346 -8.9104 15 6 4.7932 2.1525 -9.7946 16 7 5.4345 1.0250 -9.5719 17 14 4.5071 2.7339 -11.5466 18 1 5.1504 4.0584 -11.7399 19 1 5.0959 1.7550 -12.4954 20 1 3.0481 2.8509 -11.7974 21 6 4.2453 3.4104 1.1779 22 6 5.5120 2.8001 0.5728 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6885 1.8465 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8524 0.5811 -0.8498 29 1 3.8619 0.7092 0.9255 30 1 4.7307 1.9158 -2.5821 31 1 2.8172 3.5234 -3.8976 32 1 4.3602 4.4096 -3.8548 33 1 5.4944 2.4856 -4.9327 34 1 3.9512 1.5998 -4.9752 35 1 2.9654 3.3834 -6.3874 36 1 4.5085 4.2696 -6.3454 37 1 5.0119 1.6525 -7.2791 38 1 5.7591 0.4961 -10.3175 39 1 4.1134 4.4887 1.0881 40 1 3.8605 2.9643 2.0950 41 1 5.9598 1.9527 1.0919 42 1 6.2135 3.4765 0.0845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159564661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:03 Heat of formation + Delta-G solvation = -85.470641 kcal Electronic energy + Delta-G solvation = -20336.091302 eV Core-core repulsion = 17122.943948 eV Total energy + Delta-G solvation = -3213.147354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31267 -38.97982 -37.95954 -37.30747 -35.93093 -33.76330 -32.05401 -31.26587 -27.66551 -27.14482 -25.30641 -24.25727 -23.49902 -23.01089 -22.61162 -20.41092 -19.13337 -18.02787 -17.41417 -17.29086 -16.95633 -16.74984 -16.51558 -16.00128 -15.77853 -15.54904 -15.30313 -14.98587 -14.63367 -14.28151 -13.85722 -13.43992 -13.32261 -13.09518 -12.79556 -12.65696 -12.52483 -12.43378 -12.41377 -12.20464 -12.11164 -12.08206 -11.81075 -11.53048 -11.06434 -10.95102 -10.82083 -10.67827 -10.15499 -9.03660 -7.97465 -5.27097 1.47046 1.47553 1.50278 1.56493 2.07053 2.51952 2.55770 2.93003 3.36151 3.60806 3.70670 3.74513 3.89543 3.94067 4.04707 4.13385 4.25356 4.27469 4.42596 4.46668 4.48608 4.54142 4.68702 4.69099 4.74905 4.78516 4.82840 4.84759 4.97626 4.99494 5.08229 5.22307 5.25163 5.28350 5.38369 5.47198 6.14380 6.24927 6.49228 7.16568 7.31414 8.05682 8.29871 9.25833 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.003024 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.546343 B = 9257.252226 C = 9943.004111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.062 3.938 4 C -0.067 4.067 5 C -0.171 4.171 6 C 0.544 3.456 7 O -0.583 6.583 8 N -0.713 5.713 9 C 0.133 3.867 10 C -0.118 4.118 11 C 0.153 3.847 12 N -0.747 5.747 13 C -0.253 4.253 14 H 0.075 0.925 15 C -0.073 4.073 16 N -0.968 5.968 17 Si 0.976 3.024 18 H -0.277 1.277 19 H -0.293 1.293 20 H -0.277 1.277 21 C -0.145 4.145 22 C -0.132 4.132 23 H 0.038 0.962 24 H 0.100 0.900 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.415 0.585 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.021 0.979 36 H 0.022 0.978 37 H 0.376 0.624 38 H 0.253 0.747 39 H 0.088 0.912 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.676 -0.831 25.694 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.015 4.015 4 C -0.105 4.105 5 C -0.174 4.174 6 C 0.331 3.669 7 O -0.463 6.463 8 N -0.364 5.364 9 C 0.009 3.991 10 C -0.156 4.156 11 C 0.026 3.974 12 N -0.390 5.390 13 C -0.385 4.385 14 H 0.093 0.907 15 C -0.266 4.266 16 N -0.618 5.618 17 Si 0.804 3.196 18 H -0.204 1.204 19 H -0.219 1.219 20 H -0.204 1.204 21 C -0.182 4.182 22 C -0.169 4.169 23 H 0.057 0.943 24 H 0.119 0.881 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.251 0.749 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.208 0.792 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.144 0.856 41 H 0.152 0.848 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.023 -0.108 25.551 25.867 hybrid contribution -0.110 -0.047 -1.385 1.390 sum -4.133 -0.155 24.166 24.518 Atomic orbital electron populations 1.22915 0.79734 1.03911 1.00540 1.87806 1.21239 1.28307 1.95540 1.22507 0.94655 0.84291 1.00039 1.20938 0.92070 0.92213 1.05244 1.21306 1.06303 0.97984 0.91830 1.20073 0.76815 0.84855 0.85144 1.90679 1.45303 1.22376 1.87979 1.45910 1.58451 1.27009 1.05049 1.21099 0.99946 0.96053 0.82035 1.21694 1.02015 0.99435 0.92442 1.20668 0.96434 0.93927 0.86404 1.42530 1.68567 1.26249 1.01642 1.19619 1.29646 1.04671 0.84579 0.90749 1.25592 1.01387 0.97542 1.02061 1.69797 1.44575 1.16079 1.31397 0.85189 0.77841 0.77144 0.79444 1.20353 1.21868 1.20354 1.23114 1.01023 0.99393 0.94713 1.23232 0.88861 1.03989 1.00842 0.94348 0.88133 0.92851 0.92213 0.95405 0.90040 0.87785 0.74883 0.92152 0.91949 0.90674 0.90842 0.96096 0.96016 0.79217 0.93826 0.89386 0.85599 0.84774 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.41 -8.31 10.70 -148.98 -1.59 -9.90 16 3 C 0.06 1.14 5.86 71.98 0.42 1.57 16 4 C -0.07 -0.99 5.44 30.60 0.17 -0.83 16 5 C -0.17 -2.88 1.91 -52.93 -0.10 -2.98 16 6 C 0.54 13.53 6.46 87.65 0.57 14.10 16 7 O -0.58 -19.43 16.50 -3.03 -0.05 -19.48 16 8 N -0.71 -16.34 5.54 -463.07 -2.56 -18.90 16 9 C 0.13 3.62 5.68 86.38 0.49 4.11 16 10 C -0.12 -3.56 5.44 30.59 0.17 -3.39 16 11 C 0.15 6.11 6.26 86.38 0.54 6.65 16 12 N -0.75 -38.43 5.60 -343.46 -1.92 -40.35 16 13 C -0.25 -14.42 9.99 84.03 0.84 -13.58 16 14 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 15 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 16 N -0.97 -59.29 13.06 21.65 0.28 -59.01 16 17 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 C -0.15 -2.10 9.76 30.62 0.30 -1.80 16 22 C -0.13 -1.59 9.93 30.62 0.30 -1.29 16 23 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.10 1.21 8.14 -2.38 -0.02 1.20 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.03 0.63 7.59 -2.39 -0.02 0.61 16 28 H 0.08 1.21 7.98 -2.39 -0.02 1.19 16 29 H 0.10 1.12 8.09 -2.39 -0.02 1.10 16 30 H 0.41 7.46 8.31 -92.71 -0.77 6.69 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.38 20.19 7.67 -92.70 -0.71 19.48 16 38 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 39 H 0.09 1.63 7.85 -2.39 -0.02 1.61 16 40 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -71.87 355.00 1.10 -70.77 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -0.48 Total: 28.12 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 5.41 Total: 0.43 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -4.20 Total: -118.26 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.64 Total: -29.39 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -71.87 1.10 -70.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159564661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.703 kcal (2) G-P(sol) polarization free energy of solvation -71.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds