Wall clock time and date at job start Mon Mar 30 2020 01:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37096 * 119.99596 * 2 1 4 4 H 1.08002 * 119.99961 * 204.03908 * 3 2 1 5 5 C 1.38953 * 120.00253 * 24.05222 * 3 2 1 6 6 N 1.31412 * 120.00029 * 9.53167 * 5 3 2 7 7 Si 1.86801 * 120.00094 * 189.54184 * 5 3 2 8 8 H 1.48505 * 109.46976 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.47346 * 119.99293 * 7 5 3 10 10 H 1.48504 * 109.46648 * 239.99618 * 7 5 3 11 11 C 1.34776 * 120.00151 * 180.02562 * 2 1 3 12 12 O 1.21290 * 119.99849 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99991 * 359.97438 * 11 2 1 14 14 H 1.09003 * 109.47259 * 320.00146 * 13 11 2 15 15 N 1.46898 * 109.47123 * 200.00160 * 13 11 2 16 16 C 1.52998 * 109.46915 * 80.00104 * 13 11 2 17 17 N 1.46900 * 109.47019 * 175.08671 * 16 13 11 18 18 C 1.46852 * 110.99981 * 199.14236 * 17 16 13 19 19 C 1.53038 * 109.51964 * 174.15882 * 18 17 16 20 20 C 1.53120 * 109.27796 * 59.18307 * 19 18 17 21 21 N 1.46905 * 109.52602 * 182.43518 * 20 19 18 22 22 C 1.53116 * 109.16203 * 302.33985 * 20 19 18 23 23 C 1.46850 * 111.00022 * 74.93239 * 17 16 13 24 24 H 1.09004 * 109.46599 * 274.64189 * 1 2 3 25 25 H 1.08994 * 109.47536 * 34.64710 * 1 2 3 26 26 H 1.09003 * 109.46761 * 154.65046 * 1 2 3 27 27 H 0.96993 * 120.00066 * 180.02562 * 6 5 3 28 28 H 1.00904 * 110.99777 * 174.53168 * 15 13 11 29 29 H 1.00897 * 111.00006 * 298.48786 * 15 13 11 30 30 H 1.08994 * 109.47522 * 295.08884 * 16 13 11 31 31 H 1.09005 * 109.46836 * 55.09228 * 16 13 11 32 32 H 1.08998 * 109.46408 * 294.17714 * 18 17 16 33 33 H 1.08992 * 109.46256 * 54.14876 * 18 17 16 34 34 H 1.08991 * 109.51100 * 299.23654 * 19 18 17 35 35 H 1.09004 * 109.53608 * 179.13702 * 19 18 17 36 36 H 1.09006 * 109.57588 * 62.27691 * 20 19 18 37 37 H 1.00903 * 110.99818 * 299.68347 * 21 20 19 38 38 H 1.00898 * 110.99803 * 63.63242 * 21 20 19 39 39 H 1.09003 * 109.50230 * 297.71494 * 22 20 19 40 40 H 1.08999 * 109.53830 * 177.61438 * 22 20 19 41 41 H 1.08997 * 109.46358 * 305.85406 * 23 17 16 42 42 H 1.09006 * 109.45757 * 65.83571 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1602 1.2280 -0.3810 5 6 1.5462 2.3385 0.4904 6 7 0.3972 2.2588 1.1232 7 14 2.3669 3.9992 0.2501 8 1 3.6430 3.8185 -0.4877 9 1 1.4668 4.8883 -0.5273 10 1 2.6437 4.6108 1.5748 11 6 2.1390 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0001 13 6 1.3855 -2.4723 -0.0005 14 1 0.5223 -2.3935 0.6604 15 7 2.2680 -3.5471 0.4726 16 6 0.9131 -2.7884 -1.4210 17 7 0.2819 -4.1147 -1.4433 18 6 0.2266 -4.6482 -2.8104 19 6 -0.3010 -6.0844 -2.7778 20 6 -1.6969 -6.0960 -2.1486 21 7 -2.1846 -7.4789 -2.0613 22 6 -1.6201 -5.4910 -0.7441 23 6 -1.0542 -4.0720 -0.8355 24 1 -0.3633 0.0832 1.0244 25 1 -0.3634 0.8454 -0.5842 26 1 -0.3633 -0.9288 -0.4400 27 1 -0.0249 3.0624 1.4652 28 1 1.7622 -4.4152 0.5667 29 1 3.0638 -3.6566 -0.1378 30 1 0.1907 -2.0368 -1.7394 31 1 1.7674 -2.7811 -2.0980 32 1 -0.4380 -4.0307 -3.4146 33 1 1.2261 -4.6383 -3.2448 34 1 0.3705 -6.7055 -2.1852 35 1 -0.3567 -6.4754 -3.7938 36 1 -2.3790 -5.5072 -2.7620 37 1 -2.2440 -7.8999 -2.9764 38 1 -1.6032 -8.0293 -1.4472 39 1 -0.9692 -6.1028 -0.1194 40 1 -2.6179 -5.4573 -0.3066 41 1 -0.9848 -3.6436 0.1643 42 1 -1.7128 -3.4573 -1.4492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160583654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:19 Heat of formation + Delta-G solvation = -22.458501 kcal Electronic energy + Delta-G solvation = -21899.446630 eV Core-core repulsion = 18721.324438 eV Total energy + Delta-G solvation = -3178.122192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.63203 -38.42282 -35.76252 -34.67473 -33.21878 -31.51646 -31.03970 -29.92925 -27.25758 -25.99225 -24.66097 -23.51744 -22.93337 -21.45666 -20.00790 -18.61427 -17.03792 -16.61932 -16.30827 -15.82089 -15.05650 -14.99007 -14.68394 -14.52614 -14.17522 -13.95607 -13.64975 -13.53785 -13.14401 -13.03544 -12.69035 -12.44817 -11.92977 -11.55688 -11.40625 -11.32865 -11.25406 -11.14592 -11.05191 -10.89124 -10.83943 -10.44510 -10.29701 -10.23338 -9.00870 -8.95704 -8.60513 -8.32295 -7.92202 -7.61659 -6.26203 -3.85278 3.16790 3.27137 3.33953 3.65398 4.02148 4.18557 4.23716 4.58127 4.63319 4.81764 4.92710 5.02986 5.12197 5.20556 5.31510 5.34884 5.42810 5.46821 5.51764 5.61299 5.68201 5.77608 5.79153 5.84214 5.94515 6.05050 6.14005 6.21654 6.33451 6.83588 6.86635 6.98302 7.04173 7.15251 7.24974 7.59892 7.68386 8.08701 8.20051 8.54099 9.24094 9.46855 10.04220 10.76898 Molecular weight = 270.18amu Principal moments of inertia in cm(-1) A = 0.035398 B = 0.004189 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.820797 B = 6682.031982 C = 6988.436348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.449 5.449 3 C -0.303 4.303 4 H 0.097 0.903 5 C 0.029 3.971 6 N -0.885 5.885 7 Si 0.926 3.074 8 H -0.268 1.268 9 H -0.282 1.282 10 H -0.281 1.281 11 C 0.457 3.543 12 O -0.578 6.578 13 C 0.094 3.906 14 H 0.086 0.914 15 N -0.815 5.815 16 C 0.024 3.976 17 N -0.536 5.536 18 C 0.059 3.941 19 C -0.148 4.148 20 C 0.088 3.912 21 N -0.845 5.845 22 C -0.106 4.106 23 C 0.051 3.949 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.025 0.975 27 H 0.266 0.734 28 H 0.341 0.659 29 H 0.342 0.658 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.339 0.661 38 H 0.340 0.660 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 -15.011 -7.321 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.169 5.169 3 C -0.432 4.432 4 H 0.115 0.885 5 C -0.173 4.173 6 N -0.525 5.525 7 Si 0.753 3.247 8 H -0.193 1.193 9 H -0.208 1.208 10 H -0.207 1.207 11 C 0.243 3.757 12 O -0.461 6.461 13 C -0.023 4.023 14 H 0.104 0.896 15 N -0.345 5.345 16 C -0.107 4.107 17 N -0.261 5.261 18 C -0.069 4.069 19 C -0.188 4.188 20 C -0.023 4.023 21 N -0.373 5.373 22 C -0.145 4.145 23 C -0.077 4.077 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.154 0.846 29 H 0.155 0.845 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.927 -14.401 -5.984 17.064 hybrid contribution 0.297 0.808 -1.906 2.091 sum -6.630 -13.592 -7.889 17.057 Atomic orbital electron populations 1.21568 0.81473 0.98018 1.02170 1.43562 1.05326 1.04717 1.63248 1.19681 1.00274 0.84159 1.39045 0.88489 1.25348 0.96506 1.00050 0.95403 1.69986 1.17295 1.29264 1.35980 0.85866 0.79269 0.81491 0.78103 1.19279 1.20777 1.20719 1.19874 0.88013 0.84374 0.83421 1.90496 1.13933 1.86818 1.54860 1.21217 0.95582 0.92272 0.93197 0.89566 1.58556 1.11015 1.08618 1.56311 1.22972 0.99187 0.88872 0.99622 1.61867 1.20601 1.24582 1.19068 1.21993 1.00765 0.94811 0.89360 1.22437 0.98253 0.97276 1.00791 1.21535 0.93524 0.90112 0.97162 1.58937 1.58311 1.03449 1.16617 1.21580 1.01239 0.95634 0.96019 1.22159 0.88658 0.96530 1.00349 0.92044 0.91798 0.95687 0.92407 0.84570 0.84452 0.93370 0.90645 0.94871 0.90845 0.91122 0.91938 0.90595 0.84922 0.84746 0.91128 0.90822 0.89953 0.94626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.50 8.24 59.85 0.49 2.99 16 2 N -0.45 -11.60 3.02 -122.19 -0.37 -11.97 16 3 C -0.30 -8.60 9.26 -14.93 -0.14 -8.74 16 4 H 0.10 2.88 7.43 -52.49 -0.39 2.49 16 5 C 0.03 0.79 5.17 -17.47 -0.09 0.70 16 6 N -0.89 -23.89 10.59 55.50 0.59 -23.30 16 7 Si 0.93 21.08 29.56 -169.99 -5.03 16.06 16 8 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 C 0.46 11.29 6.88 -10.99 -0.08 11.21 16 12 O -0.58 -16.38 16.00 5.55 0.09 -16.30 16 13 C 0.09 1.74 2.33 -68.87 -0.16 1.58 16 14 H 0.09 1.59 5.96 -51.93 -0.31 1.28 16 15 N -0.82 -14.30 8.90 -5.66 -0.05 -14.35 16 16 C 0.02 0.37 4.39 -3.82 -0.02 0.35 16 17 N -0.54 -6.54 3.86 -234.67 -0.91 -7.45 16 18 C 0.06 0.63 5.43 -3.83 -0.02 0.61 16 19 C -0.15 -1.27 5.67 -26.65 -0.15 -1.42 16 20 C 0.09 0.77 3.32 -67.59 -0.22 0.55 16 21 N -0.85 -6.50 9.26 -4.56 -0.04 -6.54 16 22 C -0.11 -1.03 5.64 -26.65 -0.15 -1.18 16 23 C 0.05 0.59 5.29 -3.83 -0.02 0.57 16 24 H 0.06 1.46 7.37 -51.93 -0.38 1.07 16 25 H 0.06 1.50 7.29 -51.93 -0.38 1.12 16 26 H 0.02 0.46 4.59 -51.93 -0.24 0.22 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.34 5.07 8.44 -39.29 -0.33 4.74 16 29 H 0.34 6.13 8.62 -39.29 -0.34 5.79 16 30 H 0.05 0.78 6.25 -51.93 -0.32 0.45 16 31 H 0.08 1.24 7.81 -51.93 -0.41 0.83 16 32 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.80 7.93 -51.93 -0.41 0.38 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.34 2.13 9.04 -39.29 -0.36 1.77 16 38 H 0.34 2.35 8.98 -39.29 -0.35 1.99 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.01 6.76 -51.93 -0.35 0.66 16 42 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 325.89 15.07 4.91 4.91 Total: -1.00 -30.94 325.89 -8.02 -38.96 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -6.66 Total: 12.76 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -0.55 Total: 7.22 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -0.78 Total: -63.62 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.09 Total: -16.30 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.94 -8.02 -38.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160583654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.504 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds