Wall clock time and date at job start Mon Mar 30 2020 00:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 114.00050 * 2 1 4 4 H 1.09001 * 110.53518 * 31.16041 * 3 2 1 5 5 C 1.54266 * 110.48903 * 268.54899 * 3 2 1 6 6 C 1.53872 * 106.59640 * 217.71015 * 5 3 2 7 7 C 1.54266 * 106.60044 * 359.97438 * 6 5 3 8 8 C 1.54887 * 110.48342 * 153.77046 * 3 2 1 9 9 H 1.09000 * 110.75698 * 38.31296 * 8 3 2 10 10 C 1.50697 * 110.75601 * 274.93587 * 8 3 2 11 11 O 1.21280 * 120.00113 * 0.02562 * 10 8 3 12 12 N 1.34777 * 120.00029 * 180.02562 * 10 8 3 13 13 C 1.46502 * 120.00572 * 180.02562 * 12 10 8 14 14 C 1.52993 * 109.47351 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47190 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47563 * 179.97438 * 15 14 13 17 17 C 1.36937 * 120.00304 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99872 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00048 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99846 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99971 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46657 * 90.00218 * 21 19 17 23 23 H 1.48503 * 109.46932 * 210.00263 * 21 19 17 24 24 H 1.48497 * 109.47043 * 330.00535 * 21 19 17 25 25 H 1.08997 * 109.46811 * 299.99799 * 1 2 3 26 26 H 1.09004 * 109.47231 * 59.99759 * 1 2 3 27 27 H 1.08997 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09003 * 110.03179 * 336.99786 * 5 3 2 29 29 H 1.09003 * 110.02980 * 98.37715 * 5 3 2 30 30 H 1.09002 * 110.03208 * 119.28196 * 6 5 3 31 31 H 1.08996 * 110.03362 * 240.71095 * 6 5 3 32 32 H 1.09002 * 110.48438 * 142.28717 * 7 6 5 33 33 H 1.09001 * 110.48592 * 264.92893 * 7 6 5 34 34 H 0.97010 * 119.99736 * 0.02562 * 12 10 8 35 35 H 1.08997 * 109.46846 * 300.00212 * 13 12 10 36 36 H 1.08998 * 109.46497 * 59.99781 * 13 12 10 37 37 H 1.08997 * 109.47357 * 299.99945 * 14 13 12 38 38 H 1.09005 * 109.47207 * 60.00094 * 14 13 12 39 39 H 1.09007 * 109.46908 * 299.99985 * 15 14 13 40 40 H 1.08999 * 109.47333 * 59.99596 * 15 14 13 41 41 H 0.97000 * 119.99396 * 359.97438 * 16 15 14 42 42 H 0.96998 * 119.99848 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3679 2.0101 0.5282 5 6 2.2634 1.7839 -1.4446 6 6 3.5942 2.5560 -1.4251 7 6 4.1031 2.5204 0.0307 8 6 3.4198 1.2713 0.6413 9 1 3.9510 0.3626 0.3581 10 6 3.3275 1.3926 2.1405 11 8 2.2438 1.4978 2.6748 12 7 4.4492 1.3842 2.8876 13 6 4.3596 1.5015 4.3452 14 6 5.7656 1.4646 4.9472 15 6 5.6719 1.5865 6.4695 16 7 7.0181 1.5506 7.0461 17 6 7.1850 1.6438 8.4021 18 1 6.3240 1.7442 9.0464 19 6 8.4606 1.6102 8.9484 20 7 8.6209 1.6993 10.2517 21 14 9.9497 1.4372 7.8338 22 1 10.4265 2.7849 7.4321 23 1 11.0318 0.7254 8.5604 24 1 9.5745 0.6636 6.6230 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 2.3385 0.9269 -2.1140 29 1 1.4550 2.4399 -1.7677 30 1 4.3154 2.0737 -2.0850 31 1 3.4322 3.5872 -1.7385 32 1 5.1874 2.4107 0.0532 33 1 3.7987 3.4213 0.5634 34 1 5.3160 1.3003 2.4602 35 1 3.8774 2.4439 4.6048 36 1 3.7733 0.6723 4.7410 37 1 6.2474 0.5220 4.6876 38 1 6.3523 2.2936 4.5514 39 1 5.1899 2.5291 6.7295 40 1 5.0853 0.7573 6.8650 41 1 7.7913 1.4599 6.4674 42 1 9.5123 1.6755 10.6335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161355980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:24 Heat of formation + Delta-G solvation = -88.247433 kcal Electronic energy + Delta-G solvation = -20479.771436 eV Core-core repulsion = 17266.503671 eV Total energy + Delta-G solvation = -3213.267765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.41626 -38.46292 -36.27999 -36.06092 -34.45861 -32.06666 -30.49992 -29.27139 -28.59347 -26.38387 -25.39788 -22.70702 -21.76369 -21.27301 -20.73539 -19.99384 -17.88861 -17.42647 -16.99711 -16.11352 -15.69025 -15.33765 -15.25685 -14.81771 -14.53089 -14.36107 -13.87839 -13.67070 -13.51059 -12.83199 -12.80804 -12.60251 -12.37233 -12.03027 -11.82780 -11.68165 -11.60913 -11.19429 -11.08327 -11.03883 -10.83197 -10.79639 -10.70981 -10.17389 -9.82303 -9.81394 -9.59933 -9.10296 -8.91071 -7.25250 -5.77553 -3.13697 2.54735 3.03715 3.35825 3.38013 3.43902 3.52386 4.03561 4.18294 4.48319 4.57867 4.82124 4.91751 4.95836 4.98629 5.03811 5.09418 5.10850 5.20108 5.21857 5.29528 5.44836 5.49410 5.50402 5.53081 5.59488 5.63546 5.75320 5.80739 5.84900 5.92549 5.96594 6.14258 6.39467 6.68122 6.71319 6.96021 7.41522 7.98624 8.13947 8.41300 9.19992 9.92061 10.11622 11.40856 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.035756 B = 0.002870 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.898493 B = 9752.667579 C =10267.505215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.102 3.898 4 H 0.081 0.919 5 C -0.149 4.149 6 C -0.120 4.120 7 C -0.113 4.113 8 C -0.113 4.113 9 H 0.112 0.888 10 C 0.521 3.479 11 O -0.540 6.540 12 N -0.727 5.727 13 C 0.122 3.878 14 C -0.141 4.141 15 C 0.160 3.840 16 N -0.757 5.757 17 C -0.246 4.246 18 H 0.091 0.909 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.887 3.113 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 H 0.046 0.954 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.400 0.600 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.361 0.639 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.116 0.131 -27.586 30.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.298 6.298 3 C 0.044 3.956 4 H 0.099 0.901 5 C -0.187 4.187 6 C -0.157 4.157 7 C -0.151 4.151 8 C -0.135 4.135 9 H 0.130 0.870 10 C 0.307 3.693 11 O -0.417 6.417 12 N -0.378 5.378 13 C -0.002 4.002 14 C -0.180 4.180 15 C 0.033 3.967 16 N -0.403 5.403 17 C -0.375 4.375 18 H 0.108 0.892 19 C -0.193 4.193 20 N -0.582 5.582 21 Si 0.717 3.283 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.234 0.766 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.193 0.807 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.854 0.063 -26.924 29.835 hybrid contribution 1.420 -0.009 -0.826 1.643 sum -11.434 0.054 -27.751 30.014 Atomic orbital electron populations 1.22752 0.80893 1.02621 1.00043 1.87872 1.19910 1.27163 1.94863 1.22785 0.93117 0.85432 0.94295 0.90137 1.22678 0.97956 1.00621 0.97450 1.22033 0.96624 1.00721 0.96345 1.22309 1.00469 0.96434 0.95913 1.22365 0.98025 1.01413 0.91686 0.87041 1.20344 0.84152 0.75889 0.88894 1.90693 1.27736 1.49201 1.74033 1.46062 1.08988 1.74772 1.07999 1.21338 0.97909 1.02493 0.78422 1.21990 0.95396 1.02553 0.98028 1.20499 0.88365 0.99013 0.88871 1.42688 1.02027 1.90474 1.05078 1.19076 0.94320 1.42530 0.81612 0.89150 1.24695 0.97085 1.01981 0.95515 1.69705 1.21848 1.57297 1.09345 0.86509 0.83748 0.77802 0.80219 1.21071 1.21698 1.20376 0.93517 0.94346 0.89797 0.90479 0.91367 0.91110 0.91216 0.90162 0.90671 0.76604 0.91232 0.91219 0.91345 0.91347 0.95182 0.95226 0.80693 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.87 101.05 1.10 1.39 16 2 O -0.38 -4.26 10.41 -35.23 -0.37 -4.63 16 3 C 0.10 1.00 2.39 -25.07 -0.06 0.94 16 4 H 0.08 0.88 7.16 -51.93 -0.37 0.51 16 5 C -0.15 -1.06 6.56 -25.61 -0.17 -1.23 16 6 C -0.12 -0.71 6.80 -25.61 -0.17 -0.88 16 7 C -0.11 -0.77 6.26 -25.06 -0.16 -0.93 16 8 C -0.11 -1.04 3.00 -89.77 -0.27 -1.31 16 9 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 10 C 0.52 6.44 7.13 -10.99 -0.08 6.36 16 11 O -0.54 -8.79 15.72 5.56 0.09 -8.70 16 12 N -0.73 -8.02 5.56 -60.30 -0.33 -8.35 16 13 C 0.12 1.60 5.67 -4.04 -0.02 1.57 16 14 C -0.14 -2.00 5.44 -26.74 -0.15 -2.15 16 15 C 0.16 3.06 6.26 -4.04 -0.03 3.03 16 16 N -0.76 -18.09 5.41 -59.91 -0.32 -18.41 16 17 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 18 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 19 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 20 N -0.93 -29.59 13.97 55.49 0.78 -28.81 16 21 Si 0.89 22.05 27.74 -169.99 -4.71 17.33 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 25 H 0.05 0.44 8.11 -51.93 -0.42 0.01 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 34 H 0.40 3.33 8.47 -40.82 -0.35 2.99 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.36 8.27 5.53 -40.82 -0.23 8.05 16 42 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -34.63 343.51 -7.24 -41.88 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -7.29 Total: 4.94 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -0.26 Total: -0.42 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.12 Total: -55.57 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.28 Total: -13.33 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.63 -7.24 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161355980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.370 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds