Wall clock time and date at job start Mon Mar 30 2020 00:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00040 * 2 1 4 4 H 1.09001 * 110.43503 * 27.45584 * 3 2 1 5 5 C 1.54261 * 110.48638 * 264.77429 * 3 2 1 6 6 C 1.53875 * 106.60037 * 217.70888 * 5 3 2 7 7 C 1.54270 * 106.59627 * 0.02562 * 6 5 3 8 8 H 1.08997 * 110.59775 * 264.87196 * 7 6 5 9 9 C 1.50703 * 110.48599 * 142.28723 * 7 6 5 10 10 O 1.21273 * 119.99963 * 245.22475 * 9 7 6 11 11 N 1.34779 * 119.99944 * 65.22314 * 9 7 6 12 12 C 1.46499 * 119.99872 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.46840 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 11 15 15 N 1.46500 * 109.47473 * 180.02562 * 14 13 12 16 16 C 1.36939 * 120.00037 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00126 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99653 * 179.97438 * 16 15 14 19 19 N 1.31613 * 119.99744 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00081 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47117 * 89.99642 * 20 18 16 22 22 H 1.48500 * 109.47001 * 209.99705 * 20 18 16 23 23 H 1.48501 * 109.47010 * 329.99571 * 20 18 16 24 24 C 1.54887 * 104.19636 * 23.60944 * 7 6 5 25 25 H 1.09000 * 109.47217 * 60.00457 * 1 2 3 26 26 H 1.09006 * 109.47061 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47428 * 300.00138 * 1 2 3 28 28 H 1.08999 * 110.03333 * 336.99567 * 5 3 2 29 29 H 1.09002 * 110.03690 * 98.37534 * 5 3 2 30 30 H 1.08994 * 110.03663 * 240.71477 * 6 5 3 31 31 H 1.09000 * 110.03266 * 119.28167 * 6 5 3 32 32 H 0.97005 * 119.99680 * 359.97438 * 11 9 7 33 33 H 1.09001 * 109.46813 * 60.00258 * 12 11 9 34 34 H 1.08992 * 109.47397 * 300.00319 * 12 11 9 35 35 H 1.09002 * 109.47398 * 300.00326 * 13 12 11 36 36 H 1.09001 * 109.47194 * 60.00507 * 13 12 11 37 37 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 38 38 H 1.08998 * 109.47533 * 59.99948 * 14 13 12 39 39 H 0.97004 * 119.99396 * 0.02562 * 15 14 13 40 40 H 0.97001 * 120.00351 * 180.02562 * 19 18 16 41 41 H 1.09003 * 110.75772 * 80.37077 * 24 7 6 42 42 H 1.09002 * 110.75565 * 203.74620 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3370 2.0218 0.4709 5 6 2.3500 1.7451 -1.4390 6 6 3.6780 2.5186 -1.3604 7 6 4.0991 2.5213 0.1237 8 1 3.7658 3.4353 0.6152 9 6 5.5935 2.3719 0.2482 10 8 6.0627 1.3807 0.7661 11 7 6.4085 3.3398 -0.2160 12 6 7.8612 3.1947 -0.0944 13 6 8.5483 4.4226 -0.6955 14 6 10.0655 4.2709 -0.5691 15 7 10.7235 5.4467 -1.1441 16 6 12.0900 5.5352 -1.1439 17 1 12.6827 4.7380 -0.7203 18 6 12.7134 6.6493 -1.6892 19 7 14.0268 6.7341 -1.6894 20 14 11.6882 8.0279 -2.4225 21 1 11.3758 9.0267 -1.3690 22 1 12.4499 8.6834 -3.5159 23 1 10.4240 7.4694 -2.9657 24 6 3.3791 1.2889 0.7251 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 2.4647 0.8706 -2.0794 29 1 1.5631 2.3915 -1.8277 30 1 3.5360 3.5409 -1.7105 31 1 4.4371 2.0193 -1.9626 32 1 6.0331 4.1324 -0.6305 33 1 8.1830 2.3008 -0.6287 34 1 8.1307 3.1058 0.9579 35 1 8.2788 4.5110 -1.7479 36 1 8.2266 5.3167 -0.1616 37 1 10.3354 4.1821 0.4832 38 1 10.3871 3.3768 -1.1032 39 1 10.1911 6.1630 -1.5242 40 1 14.4625 7.5127 -2.0701 41 1 3.9256 0.3734 0.4984 42 1 3.2475 1.4052 1.8009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161403740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:47 Heat of formation + Delta-G solvation = -114.481519 kcal Electronic energy + Delta-G solvation = -20154.401494 eV Core-core repulsion = 16939.996134 eV Total energy + Delta-G solvation = -3214.405360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20525 -39.45303 -37.67612 -36.72437 -35.95919 -33.88105 -31.88164 -29.96867 -29.52874 -27.27601 -26.66458 -24.24590 -22.81498 -22.66394 -21.52270 -20.77003 -19.63747 -18.47911 -17.35109 -17.26186 -16.97126 -16.60149 -16.36838 -15.88918 -15.66132 -15.47444 -15.16517 -14.82070 -14.56036 -14.39405 -13.87940 -13.78289 -13.36195 -12.90814 -12.86152 -12.58155 -12.54536 -12.48386 -12.27851 -12.15855 -12.07794 -12.00739 -11.81363 -11.79421 -11.37562 -10.98335 -10.81057 -10.48799 -10.10805 -9.32512 -8.03506 -5.38806 1.38330 1.44124 1.51500 1.62179 2.13151 2.49157 2.89155 3.27380 3.42098 3.52005 3.56447 3.93523 4.06224 4.07581 4.24122 4.27432 4.33122 4.39751 4.43603 4.48668 4.54341 4.60703 4.67800 4.70966 4.72356 4.87306 4.88723 4.93631 5.07923 5.16188 5.23135 5.25040 5.28085 5.29000 5.44476 5.74065 6.19858 6.34511 6.56807 7.06723 7.26013 7.81013 8.02479 9.17929 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.048925 B = 0.002543 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.172365 B =11008.989435 C =11413.899998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.082 3.918 4 H 0.093 0.907 5 C -0.142 4.142 6 C -0.107 4.107 7 C -0.104 4.104 8 H 0.136 0.864 9 C 0.514 3.486 10 O -0.589 6.589 11 N -0.714 5.714 12 C 0.129 3.871 13 C -0.121 4.121 14 C 0.153 3.847 15 N -0.757 5.757 16 C -0.243 4.243 17 H 0.052 0.948 18 C -0.069 4.069 19 N -0.985 5.985 20 Si 0.965 3.035 21 H -0.275 1.275 22 H -0.296 1.296 23 H -0.245 1.245 24 C -0.106 4.106 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.418 0.582 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.024 0.976 38 H 0.022 0.978 39 H 0.369 0.631 40 H 0.259 0.741 41 H 0.057 0.943 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.812 -6.365 1.297 34.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C 0.024 3.976 4 H 0.111 0.889 5 C -0.180 4.180 6 C -0.145 4.145 7 C -0.125 4.125 8 H 0.154 0.846 9 C 0.302 3.698 10 O -0.469 6.469 11 N -0.366 5.366 12 C 0.005 3.995 13 C -0.159 4.159 14 C 0.026 3.974 15 N -0.404 5.404 16 C -0.374 4.374 17 H 0.070 0.930 18 C -0.261 4.261 19 N -0.635 5.635 20 Si 0.791 3.209 21 H -0.201 1.201 22 H -0.223 1.223 23 H -0.169 1.169 24 C -0.144 4.144 25 H 0.071 0.929 26 H 0.108 0.892 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.255 0.745 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.203 0.797 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -33.156 -7.319 1.701 33.996 hybrid contribution 0.215 1.030 -0.492 1.162 sum -32.940 -6.289 1.209 33.557 Atomic orbital electron populations 1.22964 0.79612 1.03601 1.00997 1.87921 1.21416 1.28649 1.95091 1.23145 0.94159 0.84598 0.95664 0.88915 1.22611 0.97846 1.00552 0.96965 1.22063 0.96833 1.02799 0.92820 1.22126 0.88945 1.01753 0.99722 0.84575 1.21107 0.90196 0.81930 0.76583 1.90702 1.78498 1.31876 1.45798 1.45902 1.06238 1.23108 1.61378 1.21076 0.79725 0.97946 1.00790 1.21750 0.93543 0.98058 1.02516 1.20664 0.91587 0.88967 0.96166 1.42639 1.02661 1.21873 1.73207 1.19045 0.83090 1.03251 1.32020 0.93039 1.25665 0.96740 1.01501 1.02158 1.69908 1.09438 1.31478 1.52691 0.85269 0.78802 0.78907 0.77937 1.20139 1.22306 1.16896 1.22387 0.94563 0.97470 0.99988 0.92873 0.89188 0.92897 0.91945 0.88995 0.87616 0.92466 0.74519 0.92481 0.92220 0.89924 0.89704 0.95781 0.95945 0.79699 0.93251 0.92427 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.85 113.37 1.23 1.47 16 2 O -0.41 -7.25 10.41 -148.98 -1.55 -8.80 16 3 C 0.08 1.10 3.36 31.68 0.11 1.21 16 4 H 0.09 0.80 7.82 -2.39 -0.02 0.78 16 5 C -0.14 -1.58 6.56 31.32 0.21 -1.38 16 6 C -0.11 -1.16 6.35 31.32 0.20 -0.96 16 7 C -0.10 -1.45 3.25 -10.46 -0.03 -1.49 16 8 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 9 C 0.51 11.46 6.99 87.66 0.61 12.07 16 10 O -0.59 -19.24 15.72 -3.01 -0.05 -19.29 16 11 N -0.71 -13.36 5.54 -463.07 -2.57 -15.93 16 12 C 0.13 3.13 5.67 86.38 0.49 3.62 16 13 C -0.12 -3.03 5.44 30.59 0.17 -2.87 16 14 C 0.15 5.66 6.26 86.38 0.54 6.20 16 15 N -0.76 -34.96 5.41 -343.46 -1.86 -36.82 16 16 C -0.24 -14.09 10.47 84.03 0.88 -13.21 16 17 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 18 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 19 N -0.99 -63.66 13.97 21.65 0.30 -63.36 16 20 Si 0.96 44.50 27.74 68.60 1.90 46.40 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 22 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 23 H -0.24 -9.86 6.52 99.48 0.65 -9.21 16 24 C -0.11 -1.88 5.66 31.89 0.18 -1.70 16 25 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.05 0.40 8.11 -2.39 -0.02 0.38 16 28 H 0.06 0.91 8.07 -2.39 -0.02 0.89 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.83 7.83 -2.39 -0.02 0.81 16 32 H 0.42 4.88 8.47 -92.70 -0.79 4.09 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 37 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.37 15.64 5.53 -92.71 -0.51 15.13 16 40 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 41 H 0.06 1.44 7.46 -2.39 -0.02 1.42 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -78.32 343.24 0.87 -77.45 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -0.36 Total: 21.03 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 5.04 Total: -0.69 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -4.12 Total: -116.11 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -1.60 Total: -28.09 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.90 Total: 46.40 kcal Total: -78.32 0.87 -77.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161403740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.034 kcal (2) G-P(sol) polarization free energy of solvation -78.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds