Wall clock time and date at job start Mon Mar 30 2020 01:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47270 * 2 1 4 4 C 1.52997 * 109.47417 * 239.99931 * 2 1 3 5 5 C 1.52994 * 109.47546 * 175.00191 * 4 2 1 6 6 C 1.50701 * 109.47495 * 179.97438 * 5 4 2 7 7 H 1.07996 * 119.99499 * 359.72273 * 6 5 4 8 8 C 1.37874 * 120.00009 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00183 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99740 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47194 * 60.00113 * 10 8 6 12 12 H 1.48500 * 109.47161 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47207 * 299.99947 * 10 8 6 14 14 N 1.46904 * 109.47258 * 119.99580 * 2 1 3 15 15 C 1.46897 * 111.00397 * 257.29270 * 14 2 1 16 16 C 1.53004 * 109.52071 * 300.09802 * 15 14 2 17 17 O 1.42896 * 109.46993 * 300.44018 * 16 15 14 18 18 C 1.53116 * 109.52695 * 179.90839 * 15 14 2 19 19 C 1.53042 * 109.27665 * 297.74719 * 18 15 14 20 20 N 1.46842 * 109.52271 * 300.82221 * 19 18 15 21 21 C 1.46901 * 111.00042 * 185.83664 * 20 19 18 22 22 C 1.46849 * 111.20344 * 61.74090 * 20 19 18 23 23 C 1.53041 * 109.52151 * 298.26039 * 22 20 19 24 24 H 1.09000 * 109.46932 * 294.84581 * 1 2 3 25 25 H 1.08993 * 109.47296 * 54.84523 * 1 2 3 26 26 H 1.09002 * 109.46841 * 174.84673 * 1 2 3 27 27 H 1.08997 * 109.47170 * 54.99718 * 4 2 1 28 28 H 1.09011 * 109.46807 * 294.99900 * 4 2 1 29 29 H 1.09004 * 109.47514 * 59.99866 * 5 4 2 30 30 H 1.09005 * 109.47113 * 300.00331 * 5 4 2 31 31 H 0.97003 * 119.99952 * 180.02562 * 9 8 6 32 32 H 1.00904 * 110.99606 * 21.24459 * 14 2 1 33 33 H 1.08997 * 109.46979 * 60.43838 * 16 15 14 34 34 H 1.09003 * 109.47039 * 180.44047 * 16 15 14 35 35 H 0.96701 * 114.00066 * 185.01606 * 17 16 15 36 36 H 1.08992 * 109.50413 * 57.68329 * 18 15 14 37 37 H 1.08994 * 109.50415 * 177.80817 * 18 15 14 38 38 H 1.08990 * 109.46490 * 180.80296 * 19 18 15 39 39 H 1.09003 * 109.45120 * 60.83037 * 19 18 15 40 40 H 1.08993 * 109.47489 * 295.79259 * 21 20 19 41 41 H 1.09003 * 109.46780 * 55.79205 * 21 20 19 42 42 H 1.09003 * 109.47320 * 175.78841 * 21 20 19 43 43 H 1.08999 * 109.47007 * 178.24553 * 22 20 19 44 44 H 1.09001 * 109.45184 * 58.26760 * 22 20 19 45 45 H 1.09004 * 109.50337 * 299.23747 * 23 22 20 46 46 H 1.09000 * 109.53505 * 179.13637 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0673 -1.3243 -2.5437 7 1 3.3692 -1.8088 -3.2103 8 6 5.4185 -1.3605 -2.8154 9 7 6.2689 -0.7743 -2.0014 10 14 6.0413 -2.2424 -4.3398 11 1 5.4486 -1.6179 -5.5498 12 1 7.5211 -2.1365 -4.4031 13 1 5.6491 -3.6734 -4.2788 14 7 2.0197 -0.6924 1.1995 15 6 2.4796 0.2683 2.2111 16 6 3.6159 1.1145 1.6333 17 8 4.6963 0.2622 1.2485 18 6 2.9796 -0.4879 3.4451 19 6 1.8226 -1.2847 4.0525 20 7 0.7374 -0.3680 4.4244 21 6 -0.3323 -1.0799 5.1364 22 6 0.2093 0.3347 3.2480 23 6 1.3180 1.1798 2.6166 24 1 -0.3633 0.4318 0.9326 25 1 -0.3633 0.5917 -0.8402 26 1 -0.3633 -1.0235 -0.0923 27 1 1.6054 -0.2618 -2.1369 28 1 1.7517 -1.7716 -1.2055 29 1 3.9995 -1.0728 -0.4259 30 1 3.8532 0.4370 -1.3572 31 1 7.2195 -0.7995 -2.1928 32 1 1.3124 -1.3048 1.5776 33 1 3.2553 1.6602 0.7614 34 1 3.9618 1.8217 2.3872 35 1 5.4823 0.7364 0.9444 36 1 3.7784 -1.1702 3.1549 37 1 3.3567 0.2234 4.1798 38 1 2.1718 -1.8130 4.9396 39 1 1.4551 -2.0052 3.3218 40 1 -0.7894 -1.8104 4.4691 41 1 0.0863 -1.5915 6.0032 42 1 -1.0873 -0.3659 5.4656 43 1 -0.6133 0.9826 3.5509 44 1 -0.1507 -0.3936 2.5214 45 1 1.6691 1.9174 3.3383 46 1 0.9303 1.6895 1.7346 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:26 Heat of formation + Delta-G solvation = -70.693025 kcal Electronic energy + Delta-G solvation = -23051.566947 eV Core-core repulsion = 19974.893493 eV Total energy + Delta-G solvation = -3076.673454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.28918 -37.98411 -36.85167 -35.33123 -34.12431 -32.03292 -31.25896 -29.77817 -28.45959 -26.88065 -25.50275 -24.22614 -23.13200 -22.41568 -21.25548 -19.63034 -18.23011 -17.96897 -17.16442 -16.56697 -16.44276 -16.15232 -16.06163 -15.49970 -14.91235 -14.72711 -14.54720 -14.33869 -13.98694 -13.68950 -13.64928 -13.43372 -13.32238 -12.95797 -12.81958 -12.64186 -12.60738 -12.40139 -12.34213 -12.21215 -12.11819 -11.64149 -11.49235 -11.40282 -11.14552 -10.91225 -10.82296 -10.49307 -10.23958 -9.27124 -8.95509 -8.01868 -6.09326 1.40762 1.43190 1.50353 2.48951 2.99652 3.21620 3.28941 3.53927 3.81720 3.89053 4.08858 4.16375 4.23586 4.35752 4.39611 4.47721 4.51630 4.55996 4.58415 4.61980 4.67870 4.76479 4.81968 4.88266 4.90973 4.98971 5.03051 5.04469 5.10786 5.15808 5.20566 5.28242 5.36260 5.42239 5.59134 5.71361 6.07436 6.11858 6.15028 6.33919 6.46501 6.52101 6.70550 7.11555 7.12793 7.55127 9.07240 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.028355 B = 0.004999 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.230754 B = 5599.244758 C = 5953.600630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.092 3.908 3 H 0.061 0.939 4 C -0.092 4.092 5 C 0.050 3.950 6 C -0.549 4.549 7 H 0.041 0.959 8 C 0.008 3.992 9 N -0.914 5.914 10 Si 0.948 3.052 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.275 1.275 14 N -0.667 5.667 15 C 0.122 3.878 16 C 0.089 3.911 17 O -0.555 6.555 18 C -0.091 4.091 19 C 0.059 3.941 20 N -0.548 5.548 21 C 0.024 3.976 22 C 0.056 3.944 23 C -0.139 4.139 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.034 0.966 30 H -0.027 1.027 31 H 0.257 0.743 32 H 0.333 0.667 33 H 0.027 0.973 34 H 0.054 0.946 35 H 0.374 0.626 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.028 0.972 40 H 0.024 0.976 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.035 0.965 45 H 0.079 0.921 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.939 4.117 14.378 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 H 0.079 0.921 4 C -0.130 4.130 5 C 0.013 3.987 6 C -0.587 4.587 7 H 0.059 0.941 8 C -0.190 4.190 9 N -0.554 5.554 10 Si 0.774 3.226 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.200 1.200 14 N -0.299 5.299 15 C 0.031 3.969 16 C 0.010 3.990 17 O -0.359 6.359 18 C -0.129 4.129 19 C -0.069 4.069 20 N -0.273 5.273 21 C -0.123 4.123 22 C -0.072 4.072 23 C -0.179 4.179 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.053 0.947 30 H -0.008 1.008 31 H 0.066 0.934 32 H 0.154 0.846 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.221 0.779 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.053 0.947 45 H 0.098 0.902 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.366 3.912 14.638 19.557 hybrid contribution -0.017 -0.260 -1.544 1.566 sum -12.383 3.652 13.093 18.387 Atomic orbital electron populations 1.22587 0.95541 1.02227 1.02883 1.21499 0.93023 0.96779 0.90438 0.92078 1.21523 0.98046 0.98221 0.95211 1.18783 0.90878 0.93533 0.95500 1.21830 0.92408 1.34556 1.09946 0.94093 1.25736 0.97333 0.96599 0.99351 1.70083 1.02059 1.45120 1.38109 0.85783 0.77118 0.79225 0.80489 1.19791 1.20731 1.20028 1.60432 1.43127 1.20709 1.05635 1.20971 0.92999 0.91678 0.91246 1.22249 0.88252 0.91764 0.96712 1.86671 1.25763 1.36285 1.87211 1.21414 0.97308 0.99283 0.94873 1.22070 0.91944 0.93586 0.99337 1.61968 1.10853 1.29700 1.24778 1.22406 0.93881 0.97809 0.98248 1.22177 0.96861 0.97159 0.90987 1.22261 0.95978 0.98754 1.00905 0.90640 0.91881 0.92656 0.94623 0.94731 0.94744 1.00836 0.93404 0.84640 0.95516 0.92841 0.77920 0.92315 0.90837 0.89865 0.95361 0.95746 0.90689 0.90296 0.89214 0.94714 0.90224 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.48 8.29 71.98 0.60 -3.88 16 2 C 0.09 3.12 1.74 44.91 0.08 3.20 16 3 H 0.06 2.17 4.94 -2.39 -0.01 2.15 16 4 C -0.09 -4.04 4.83 30.59 0.15 -3.89 16 5 C 0.05 2.73 4.17 29.85 0.12 2.85 16 6 C -0.55 -32.99 9.11 25.60 0.23 -32.76 16 7 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 8 C 0.01 0.48 5.46 84.65 0.46 0.94 16 9 N -0.91 -55.81 13.29 21.45 0.28 -55.53 16 10 Si 0.95 46.18 29.54 68.60 2.03 48.21 16 11 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 14 N -0.67 -21.94 5.18 -447.90 -2.32 -24.26 16 15 C 0.12 3.50 0.44 3.61 0.00 3.50 16 16 C 0.09 2.88 5.68 71.98 0.41 3.29 16 17 O -0.55 -22.58 10.52 -148.98 -1.57 -24.15 16 18 C -0.09 -2.48 4.91 30.65 0.15 -2.33 16 19 C 0.06 1.35 5.23 86.33 0.45 1.80 16 20 N -0.55 -11.01 4.91 -922.59 -4.53 -15.54 16 21 C 0.02 0.38 9.59 127.69 1.22 1.60 16 22 C 0.06 1.10 4.45 86.33 0.38 1.48 16 23 C -0.14 -3.12 4.29 30.65 0.13 -2.99 16 24 H 0.07 1.61 4.29 -2.39 -0.01 1.60 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.03 2.03 6.06 -2.38 -0.01 2.01 16 30 H -0.03 -1.57 8.14 -2.38 -0.02 -1.59 16 31 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.33 10.06 4.88 -89.69 -0.44 9.63 16 33 H 0.03 0.94 6.09 -2.39 -0.01 0.93 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.37 14.47 9.12 -74.06 -0.68 13.79 16 36 H 0.06 1.95 7.78 -2.39 -0.02 1.93 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 38 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 39 H 0.03 0.71 6.64 -2.39 -0.02 0.69 16 40 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 1.47 8.12 -2.39 -0.02 1.45 16 44 H 0.03 0.72 5.01 -2.39 -0.01 0.71 16 45 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.07 1.63 5.79 -2.39 -0.01 1.61 16 Total: -1.00 -67.20 335.31 -1.86 -69.06 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: -0.15 Total: 29.38 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 4.39 Total: -27.18 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -6.57 Total: -95.33 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -1.57 Total: -24.15 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -67.20 -1.86 -69.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.629 kcal (2) G-P(sol) polarization free energy of solvation -67.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds