Wall clock time and date at job start Mon Mar 30 2020 00:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00345 * 2 1 4 4 C 1.52996 * 109.47357 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46840 * 65.00403 * 4 3 2 6 6 C 1.34779 * 119.99550 * 180.02562 * 5 4 3 7 7 O 1.21580 * 120.00475 * 5.16838 * 6 5 4 8 8 N 1.34779 * 119.99645 * 185.17516 * 6 5 4 9 9 C 1.46496 * 119.99989 * 185.27616 * 8 6 5 10 10 C 1.50703 * 109.46946 * 269.99549 * 9 8 6 11 11 H 1.08004 * 120.00114 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00008 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99855 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99824 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47153 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47023 * 120.00058 * 14 12 10 17 17 H 1.48503 * 109.46756 * 239.99939 * 14 12 10 18 18 C 1.46508 * 120.00087 * 5.26945 * 8 6 5 19 19 C 1.54269 * 110.02961 * 117.88389 * 18 8 6 20 20 C 1.54961 * 104.15991 * 95.75463 * 19 18 8 21 21 C 1.54896 * 102.77640 * 37.88719 * 20 19 18 22 22 C 1.53869 * 110.03266 * 235.10287 * 18 8 6 23 23 H 1.08997 * 109.47253 * 299.99738 * 1 2 3 24 24 H 1.08996 * 109.47182 * 60.00130 * 1 2 3 25 25 H 1.09006 * 109.46976 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47071 * 59.99268 * 3 2 1 27 27 H 1.09001 * 109.46681 * 300.00422 * 3 2 1 28 28 H 1.08997 * 109.47465 * 304.99586 * 4 3 2 29 29 H 1.09003 * 109.46936 * 184.99542 * 4 3 2 30 30 H 0.97001 * 120.00197 * 359.97438 * 5 4 3 31 31 H 1.09001 * 109.47525 * 29.99555 * 9 8 6 32 32 H 1.09006 * 109.47461 * 149.99893 * 9 8 6 33 33 H 0.97004 * 119.99374 * 179.97438 * 13 12 10 34 34 H 1.09001 * 110.01543 * 356.49244 * 18 8 6 35 35 H 1.08997 * 110.48248 * 214.40145 * 19 18 8 36 36 H 1.08997 * 110.48680 * 337.04519 * 19 18 8 37 37 H 1.08992 * 110.72127 * 279.57242 * 20 19 18 38 38 H 1.08999 * 110.92056 * 156.29338 * 20 19 18 39 39 H 1.08999 * 110.48363 * 203.40192 * 21 20 19 40 40 H 1.09000 * 110.59712 * 80.81383 * 21 20 19 41 41 H 1.08999 * 110.03904 * 359.94829 * 22 18 8 42 42 H 1.08998 * 110.03478 * 121.38242 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2510 6 6 5.2894 0.3551 -1.4733 7 8 6.0998 0.5942 -0.5991 8 7 5.7039 -0.1189 -2.6650 9 6 7.1151 -0.4553 -2.8688 10 6 7.8518 0.7565 -3.3787 11 1 7.3219 1.6846 -3.5349 12 6 9.2023 0.6805 -3.6458 13 7 9.8477 -0.4494 -3.4551 14 14 10.1156 2.1828 -4.2771 15 1 9.1691 3.3200 -4.4050 16 1 11.1959 2.5421 -3.3238 17 1 10.7075 1.8804 -5.6051 18 6 4.7432 -0.2978 -3.7566 19 6 5.1219 0.6069 -4.9474 20 6 5.9415 -0.3190 -5.8812 21 6 5.2006 -1.6736 -5.7570 22 6 4.7935 -1.7472 -4.2708 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8508 0.5685 0.8427 29 1 3.9785 2.1765 0.0901 30 1 3.3239 0.3027 -1.9192 31 1 7.5527 -0.7752 -1.9231 32 1 7.1948 -1.2621 -3.5975 33 1 10.7978 -0.5030 -3.6435 34 1 3.7374 -0.0589 -3.4112 35 1 4.2260 0.9641 -5.4551 36 1 5.7308 1.4459 -4.6105 37 1 6.9698 -0.4077 -5.5308 38 1 5.9151 0.0428 -6.9091 39 1 5.8671 -2.4977 -6.0113 40 1 4.3173 -1.6875 -6.3955 41 1 5.5334 -2.3173 -3.7089 42 1 3.8122 -2.2116 -4.1750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186521426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:04 Heat of formation + Delta-G solvation = -74.590113 kcal Electronic energy + Delta-G solvation = -22043.590734 eV Core-core repulsion = 18830.915195 eV Total energy + Delta-G solvation = -3212.675539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.67354 -38.16123 -37.25718 -34.29859 -33.41330 -32.33320 -29.64445 -28.19183 -27.79573 -26.58733 -25.97414 -23.18099 -21.93931 -20.60643 -20.04659 -18.70597 -17.48749 -16.75780 -16.40872 -16.22595 -15.42339 -15.08184 -14.64400 -14.47618 -14.34790 -14.27074 -13.43097 -13.06185 -12.75461 -12.61804 -12.22800 -11.99612 -11.79512 -11.38729 -11.30167 -11.16938 -10.97572 -10.80032 -10.63947 -10.52659 -10.49237 -10.32403 -9.92529 -9.90279 -9.70500 -9.35396 -9.07271 -8.51994 -8.32431 -7.42436 -5.93327 -3.95090 3.35129 3.42725 3.44096 3.49733 3.61839 4.11550 4.49473 4.64326 4.86326 5.01939 5.09106 5.14893 5.16839 5.21719 5.26042 5.39753 5.41553 5.44455 5.77724 5.81331 6.00659 6.02301 6.08592 6.09341 6.22529 6.37377 6.39992 6.55699 6.74793 6.88273 6.92865 7.03476 7.06606 7.23311 7.54898 7.72826 7.89929 8.08468 8.38451 8.89620 9.05567 9.51497 9.70097 11.14435 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019572 B = 0.005699 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.285329 B = 4912.187712 C = 5763.761713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.050 3.950 4 C 0.143 3.857 5 N -0.756 5.756 6 C 0.700 3.300 7 O -0.587 6.587 8 N -0.607 5.607 9 C 0.261 3.739 10 C -0.508 4.508 11 H 0.058 0.942 12 C 0.059 3.941 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.144 3.856 19 C -0.130 4.130 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.134 4.134 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.392 0.608 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.260 0.740 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.290 0.587 -0.144 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C -0.027 4.027 4 C 0.018 3.982 5 N -0.417 5.417 6 C 0.401 3.599 7 O -0.464 6.464 8 N -0.342 5.342 9 C 0.142 3.858 10 C -0.547 4.547 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.212 1.212 18 C 0.039 3.961 19 C -0.169 4.169 20 C -0.162 4.162 21 C -0.158 4.158 22 C -0.173 4.173 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.228 0.772 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.363 0.524 0.497 17.378 hybrid contribution -0.035 0.954 -0.689 1.178 sum -17.398 1.478 -0.192 17.462 Atomic orbital electron populations 1.22740 0.81261 1.02749 0.99821 1.87980 1.19459 1.27704 1.95376 1.22859 0.93834 0.85103 1.00917 1.21066 0.90516 0.98829 0.87800 1.45268 1.06697 1.68753 1.20944 1.15935 0.81707 0.78792 0.83452 1.90882 1.52847 1.57967 1.44745 1.47605 1.10976 1.66922 1.08719 1.19149 0.73129 0.95969 0.97575 1.21484 0.93414 0.97243 1.42536 0.92430 1.24898 0.97368 0.95844 0.96069 1.69944 1.09291 1.25050 1.49355 0.86556 0.79923 0.83359 0.78260 1.19931 1.21100 1.21169 1.21490 0.91269 0.94856 0.88516 1.22735 0.99150 0.99445 0.95555 1.22590 1.01871 0.93675 0.98075 1.22298 0.99294 0.98624 0.95543 1.22549 1.01164 0.96792 0.96777 0.94183 0.94130 0.89673 0.91864 0.92738 0.91145 0.90556 0.77238 0.94494 0.94523 0.93012 0.91553 0.92845 0.89541 0.88399 0.92964 0.92084 0.92704 0.90490 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.52 10.65 -35.23 -0.38 -4.90 16 3 C 0.05 0.52 6.07 37.16 0.23 0.74 16 4 C 0.14 2.04 6.07 -4.04 -0.02 2.01 16 5 N -0.76 -12.74 5.38 -65.23 -0.35 -13.10 16 6 C 0.70 15.58 8.26 -86.91 -0.72 14.86 16 7 O -0.59 -15.79 15.99 5.30 0.08 -15.71 16 8 N -0.61 -13.20 2.34 -171.88 -0.40 -13.60 16 9 C 0.26 6.81 4.04 -5.19 -0.02 6.79 16 10 C -0.51 -14.08 7.20 -34.44 -0.25 -14.33 16 11 H 0.06 1.62 6.49 -52.48 -0.34 1.28 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 14 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 15 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 C 0.14 2.47 3.33 -66.81 -0.22 2.25 16 19 C -0.13 -2.23 5.88 -25.03 -0.15 -2.38 16 20 C -0.12 -2.16 6.36 -24.70 -0.16 -2.32 16 21 C -0.12 -1.80 6.83 -25.07 -0.17 -1.97 16 22 C -0.13 -2.12 5.97 -25.61 -0.15 -2.28 16 23 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.39 5.71 5.93 -40.82 -0.24 5.47 16 31 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 32 H 0.04 0.96 5.63 -51.93 -0.29 0.67 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 0.97 5.54 -51.93 -0.29 0.68 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.75 6.02 -51.93 -0.31 1.44 16 37 H 0.10 2.09 5.91 -51.93 -0.31 1.79 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.39 6.67 -51.93 -0.35 1.05 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 330.66 15.07 4.98 4.98 Total: -1.00 -33.29 330.66 -7.69 -40.98 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.73 Total: 3.84 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -0.62 Total: 6.33 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.02 Total: -52.47 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.29 Total: -20.61 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.29 -7.69 -40.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186521426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.613 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds