Wall clock time and date at job start Mon Mar 30 2020 00:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00345 * 2 1 4 4 C 1.52996 * 109.47357 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46840 * 65.00403 * 4 3 2 6 6 C 1.34779 * 119.99550 * 180.02562 * 5 4 3 7 7 O 1.21580 * 120.00475 * 5.16838 * 6 5 4 8 8 N 1.34779 * 119.99645 * 185.17516 * 6 5 4 9 9 C 1.46496 * 119.99989 * 185.27616 * 8 6 5 10 10 C 1.50703 * 109.46946 * 269.99549 * 9 8 6 11 11 H 1.08004 * 120.00114 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00008 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99855 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 119.99824 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47153 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47023 * 120.00058 * 14 12 10 17 17 H 1.48503 * 109.46756 * 239.99939 * 14 12 10 18 18 C 1.46508 * 120.00087 * 5.26945 * 8 6 5 19 19 C 1.54269 * 110.02961 * 117.88389 * 18 8 6 20 20 C 1.54961 * 104.15991 * 95.75463 * 19 18 8 21 21 C 1.54896 * 102.77640 * 37.88719 * 20 19 18 22 22 C 1.53869 * 110.03266 * 235.10287 * 18 8 6 23 23 H 1.08997 * 109.47253 * 299.99738 * 1 2 3 24 24 H 1.08996 * 109.47182 * 60.00130 * 1 2 3 25 25 H 1.09006 * 109.46976 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47071 * 59.99268 * 3 2 1 27 27 H 1.09001 * 109.46681 * 300.00422 * 3 2 1 28 28 H 1.08997 * 109.47465 * 304.99586 * 4 3 2 29 29 H 1.09003 * 109.46936 * 184.99542 * 4 3 2 30 30 H 0.97001 * 120.00197 * 359.97438 * 5 4 3 31 31 H 1.09001 * 109.47525 * 29.99555 * 9 8 6 32 32 H 1.09006 * 109.47461 * 149.99893 * 9 8 6 33 33 H 0.97004 * 119.99374 * 179.97438 * 13 12 10 34 34 H 1.09001 * 110.01543 * 356.49244 * 18 8 6 35 35 H 1.08997 * 110.48248 * 214.40145 * 19 18 8 36 36 H 1.08997 * 110.48680 * 337.04519 * 19 18 8 37 37 H 1.08992 * 110.72127 * 279.57242 * 20 19 18 38 38 H 1.08999 * 110.92056 * 156.29338 * 20 19 18 39 39 H 1.08999 * 110.48363 * 203.40192 * 21 20 19 40 40 H 1.09000 * 110.59712 * 80.81383 * 21 20 19 41 41 H 1.08999 * 110.03904 * 359.94829 * 22 18 8 42 42 H 1.08998 * 110.03478 * 121.38242 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2510 6 6 5.2894 0.3551 -1.4733 7 8 6.0998 0.5942 -0.5991 8 7 5.7039 -0.1189 -2.6650 9 6 7.1151 -0.4553 -2.8688 10 6 7.8518 0.7565 -3.3787 11 1 7.3219 1.6846 -3.5349 12 6 9.2023 0.6805 -3.6458 13 7 9.8477 -0.4494 -3.4551 14 14 10.1156 2.1828 -4.2771 15 1 9.1691 3.3200 -4.4050 16 1 11.1959 2.5421 -3.3238 17 1 10.7075 1.8804 -5.6051 18 6 4.7432 -0.2978 -3.7566 19 6 5.1219 0.6069 -4.9474 20 6 5.9415 -0.3190 -5.8812 21 6 5.2006 -1.6736 -5.7570 22 6 4.7935 -1.7472 -4.2708 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8508 0.5685 0.8427 29 1 3.9785 2.1765 0.0901 30 1 3.3239 0.3027 -1.9192 31 1 7.5527 -0.7752 -1.9231 32 1 7.1948 -1.2621 -3.5975 33 1 10.7978 -0.5030 -3.6435 34 1 3.7374 -0.0589 -3.4112 35 1 4.2260 0.9641 -5.4551 36 1 5.7308 1.4459 -4.6105 37 1 6.9698 -0.4077 -5.5308 38 1 5.9151 0.0428 -6.9091 39 1 5.8671 -2.4977 -6.0113 40 1 4.3173 -1.6875 -6.3955 41 1 5.5334 -2.3173 -3.7089 42 1 3.8122 -2.2116 -4.1750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186521426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:04 Heat of formation + Delta-G solvation = -98.087975 kcal Electronic energy + Delta-G solvation = -22044.609677 eV Core-core repulsion = 18830.915195 eV Total energy + Delta-G solvation = -3213.694483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30643 -39.17129 -38.61400 -35.80533 -35.25140 -34.28400 -30.95949 -29.60197 -29.34882 -27.92473 -27.04134 -24.94993 -23.27012 -22.16021 -21.37268 -20.24859 -19.04791 -18.58513 -17.61104 -17.42576 -16.71502 -16.29396 -16.25971 -16.03762 -15.76675 -15.61044 -14.89972 -14.58561 -14.34211 -13.91467 -13.84302 -13.31784 -13.09758 -12.86482 -12.79201 -12.62331 -12.60023 -12.33729 -12.16882 -12.08222 -11.84007 -11.77089 -11.61823 -11.31601 -11.16378 -10.94387 -10.60049 -10.54785 -10.09656 -9.20061 -8.11840 -6.22019 1.36868 1.39575 1.50280 1.93317 2.32940 2.45628 2.84548 3.12998 3.19780 3.78130 3.87649 3.95480 4.11305 4.22807 4.44936 4.54343 4.58882 4.63294 4.68566 4.69743 4.75342 4.76729 4.86305 4.92836 4.93555 5.05070 5.10712 5.18099 5.22358 5.33642 5.44022 5.56435 5.63250 5.70113 5.80321 5.94843 6.20193 6.25236 6.25470 6.84976 7.27781 7.42022 7.82165 8.95044 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019572 B = 0.005699 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.285329 B = 4912.187712 C = 5763.761713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.061 3.939 4 C 0.136 3.864 5 N -0.734 5.734 6 C 0.691 3.309 7 O -0.644 6.644 8 N -0.611 5.611 9 C 0.284 3.716 10 C -0.509 4.509 11 H 0.051 0.949 12 C 0.008 3.992 13 N -0.931 5.931 14 Si 0.955 3.045 15 H -0.269 1.269 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.136 3.864 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.111 4.111 22 C -0.132 4.132 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.406 0.594 31 H -0.017 1.017 32 H 0.031 0.969 33 H 0.263 0.737 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.043 0.957 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.436 1.520 -1.682 21.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.016 4.016 4 C 0.012 3.988 5 N -0.394 5.394 6 C 0.392 3.608 7 O -0.526 6.526 8 N -0.345 5.345 9 C 0.163 3.837 10 C -0.548 4.548 11 H 0.069 0.931 12 C -0.190 4.190 13 N -0.572 5.572 14 Si 0.781 3.219 15 H -0.193 1.193 16 H -0.213 1.213 17 H -0.197 1.197 18 C 0.033 3.967 19 C -0.164 4.164 20 C -0.166 4.166 21 C -0.148 4.148 22 C -0.171 4.171 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.245 0.755 31 H 0.001 0.999 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.062 0.938 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.596 1.455 -1.072 20.675 hybrid contribution 0.869 0.630 -0.179 1.088 sum -19.727 2.085 -1.251 19.876 Atomic orbital electron populations 1.22928 0.79212 1.03691 1.01173 1.87929 1.21694 1.28309 1.95687 1.22779 0.90425 0.85235 1.03131 1.21271 0.93814 0.97946 0.85755 1.45077 1.04655 1.67562 1.22113 1.16230 0.83067 0.78560 0.82904 1.90832 1.54857 1.60378 1.46546 1.47499 1.10190 1.66657 1.10160 1.18543 0.75664 0.95303 0.94224 1.21615 0.93827 0.97253 1.42078 0.93110 1.25711 0.98291 0.98676 0.96330 1.70063 1.09640 1.27057 1.50430 0.85544 0.78433 0.79872 0.78042 1.19300 1.21262 1.19693 1.21894 0.91461 0.96062 0.87303 1.22704 1.00174 0.97994 0.95574 1.22516 0.99409 0.95634 0.99010 1.22278 1.00300 0.96786 0.95460 1.22547 1.02204 0.95456 0.96872 0.92901 0.92659 0.89070 0.89322 0.90693 0.93176 0.90683 0.75525 0.99894 0.95085 0.92835 0.88110 0.88607 0.93165 0.93473 0.90960 0.92677 0.88862 0.93802 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.64 10.65 -148.98 -1.59 -10.23 16 3 C 0.06 1.09 6.07 71.98 0.44 1.53 16 4 C 0.14 3.79 6.07 86.38 0.52 4.32 16 5 N -0.73 -24.12 5.38 -478.54 -2.58 -26.69 16 6 C 0.69 31.58 8.26 179.05 1.48 33.06 16 7 O -0.64 -36.49 15.99 -3.97 -0.06 -36.55 16 8 N -0.61 -27.25 2.34 -815.98 -1.91 -29.16 16 9 C 0.28 15.70 4.04 85.63 0.35 16.04 16 10 C -0.51 -29.42 7.20 25.60 0.18 -29.24 16 11 H 0.05 2.96 6.49 -2.91 -0.02 2.94 16 12 C 0.01 0.46 5.46 84.66 0.46 0.92 16 13 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 14 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 15 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 C 0.14 4.45 3.33 45.71 0.15 4.61 16 19 C -0.13 -4.08 5.88 31.69 0.19 -3.89 16 20 C -0.13 -4.29 6.36 31.91 0.20 -4.09 16 21 C -0.11 -3.04 6.83 31.67 0.22 -2.83 16 22 C -0.13 -3.94 5.97 31.32 0.19 -3.75 16 23 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.41 10.79 5.93 -92.71 -0.55 10.25 16 31 H -0.02 -1.11 7.50 -2.39 -0.02 -1.13 16 32 H 0.03 1.74 5.63 -2.38 -0.01 1.73 16 33 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.10 2.58 5.54 -2.39 -0.01 2.56 16 35 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.05 2.01 6.02 -2.39 -0.01 2.00 16 37 H 0.05 2.07 5.91 -2.39 -0.01 2.05 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.04 1.60 6.67 -2.39 -0.02 1.59 16 42 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -77.94 330.66 2.26 -75.68 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.46 Total: 17.58 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 5.62 Total: 18.24 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -4.20 Total: -112.81 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -1.65 Total: -46.78 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -77.94 2.26 -75.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186521426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.406 kcal (2) G-P(sol) polarization free energy of solvation -77.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds