Wall clock time and date at job start Mon Mar 30 2020 00:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00289 * 2 1 4 4 C 1.53000 * 109.47171 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47014 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47280 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00003 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00446 * 179.97438 * 6 5 4 9 9 C 1.47025 * 125.64729 * 0.02662 * 8 6 5 10 10 C 1.54319 * 107.27301 * 178.89172 * 9 8 6 11 11 C 1.55160 * 102.94336 * 337.80918 * 10 9 8 12 12 H 1.09004 * 110.99880 * 277.42893 * 11 10 9 13 13 N 1.46498 * 111.00492 * 153.57348 * 11 10 9 14 14 C 1.46492 * 120.00089 * 301.44948 * 13 11 10 15 15 C 1.36939 * 119.99816 * 121.45216 * 13 11 10 16 16 H 1.08004 * 119.99957 * 21.72362 * 15 13 11 17 17 C 1.38803 * 120.00077 * 201.72575 * 15 13 11 18 18 N 1.31623 * 120.00066 * 13.62625 * 17 15 13 19 19 Si 1.86806 * 119.99993 * 193.63032 * 17 15 13 20 20 H 1.48494 * 109.47152 * 59.99755 * 19 17 15 21 21 H 1.48504 * 109.46793 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46953 * 299.99655 * 19 17 15 23 23 C 1.47417 * 125.65034 * 179.97438 * 8 6 5 24 24 H 1.09006 * 109.47012 * 60.00339 * 1 2 3 25 25 H 1.09001 * 109.47158 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47407 * 300.00173 * 1 2 3 27 27 H 1.08998 * 109.47100 * 59.99597 * 3 2 1 28 28 H 1.09005 * 109.46985 * 299.99952 * 3 2 1 29 29 H 1.08996 * 109.47257 * 60.00237 * 4 3 2 30 30 H 1.08997 * 109.46925 * 299.99564 * 4 3 2 31 31 H 1.08998 * 109.47136 * 59.99586 * 5 4 3 32 32 H 1.09005 * 109.47106 * 299.99844 * 5 4 3 33 33 H 1.09002 * 109.88165 * 59.47048 * 9 8 6 34 34 H 1.08999 * 110.00704 * 298.38316 * 9 8 6 35 35 H 1.08992 * 110.72449 * 219.44380 * 10 9 8 36 36 H 1.08999 * 110.71644 * 96.16506 * 10 9 8 37 37 H 1.09007 * 109.46957 * 94.44873 * 14 13 11 38 38 H 1.09003 * 109.47461 * 214.44531 * 14 13 11 39 39 H 1.09002 * 109.47505 * 334.45417 * 14 13 11 40 40 H 0.96998 * 119.99802 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.36830 * 85.33819 * 23 8 6 42 42 H 1.09000 * 110.36746 * 323.01395 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1578 2.5822 -0.0013 6 6 5.6601 2.4633 -0.0013 7 8 6.1817 1.3683 -0.0013 8 7 6.4241 3.5735 -0.0023 9 6 5.9256 4.9567 -0.0030 10 6 7.1563 5.8873 0.0244 11 6 8.2677 4.9766 0.6099 12 1 8.2151 4.9467 1.6983 13 7 9.5930 5.4114 0.1621 14 6 9.8996 5.4707 -1.2692 15 6 10.5454 5.7624 1.0814 16 1 10.4731 5.4038 2.0976 17 6 11.6036 6.5790 0.7072 18 7 11.5594 7.2315 -0.4350 19 14 13.0904 6.7519 1.8248 20 1 13.7175 5.4207 2.0239 21 1 14.0733 7.6746 1.2018 22 1 12.6621 7.2986 3.1374 23 6 7.8980 3.6023 -0.0019 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8568 0.6438 -0.8908 30 1 3.8574 0.6435 0.8891 31 1 3.8366 3.1234 0.8886 32 1 3.8358 3.1229 -0.8913 33 1 5.3104 5.1294 0.8801 34 1 5.3407 5.1419 -0.9039 35 1 6.9777 6.7440 0.6740 36 1 7.4158 6.2132 -0.9829 37 1 9.7208 6.4810 -1.6375 38 1 10.9449 5.2057 -1.4283 39 1 9.2611 4.7698 -1.8069 40 1 12.2991 7.8019 -0.6966 41 1 8.2792 3.5255 -1.0202 42 1 8.2930 2.7943 0.6139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189085560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:48 Heat of formation + Delta-G solvation = -60.287507 kcal Electronic energy + Delta-G solvation = -20845.895049 eV Core-core repulsion = 17633.839717 eV Total energy + Delta-G solvation = -3212.055332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.85158 -38.23353 -37.44842 -34.81849 -33.73408 -31.64217 -29.83072 -28.64681 -27.45505 -26.11061 -25.81092 -23.56534 -22.30417 -21.72783 -19.32419 -18.94208 -17.09564 -17.05266 -16.58214 -16.48318 -15.90144 -15.24286 -15.02210 -14.74701 -14.30486 -13.71687 -13.40414 -13.33702 -12.74921 -12.58814 -12.51377 -12.25639 -12.10757 -11.90903 -11.84938 -11.36890 -11.22767 -11.07489 -10.97021 -10.78925 -10.52388 -10.45281 -10.27462 -9.94934 -9.90892 -9.89270 -9.62532 -8.59990 -8.34040 -6.84063 -5.78141 -3.24198 2.81108 3.08818 3.37028 3.42662 3.44117 3.59512 4.45264 4.55598 4.74397 4.86447 5.00909 5.01332 5.02783 5.11477 5.16706 5.21993 5.31068 5.33748 5.37763 5.42917 5.52264 5.60115 5.76433 5.89665 5.94725 6.01011 6.11242 6.28162 6.37618 6.53868 6.63006 6.77715 6.86340 6.88244 7.33417 7.66719 7.76319 7.79012 8.31904 8.37253 9.17022 9.79505 10.27467 11.26745 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.053064 B = 0.003012 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.536688 B = 9294.956093 C = 9431.808632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.104 4.104 5 C -0.132 4.132 6 C 0.524 3.476 7 O -0.547 6.547 8 N -0.614 5.614 9 C 0.102 3.898 10 C -0.152 4.152 11 C 0.173 3.827 12 H 0.078 0.922 13 N -0.586 5.586 14 C 0.159 3.841 15 C -0.260 4.260 16 H 0.070 0.930 17 C 0.004 3.996 18 N -0.906 5.906 19 Si 0.907 3.093 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.084 3.916 24 H 0.040 0.960 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.031 0.969 38 H 0.045 0.955 39 H 0.002 0.998 40 H 0.254 0.746 41 H 0.070 0.930 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.715 -6.031 -0.284 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.015 4.015 4 C -0.142 4.142 5 C -0.172 4.172 6 C 0.313 3.687 7 O -0.425 6.425 8 N -0.348 5.348 9 C -0.021 4.021 10 C -0.193 4.193 11 C 0.063 3.937 12 H 0.096 0.904 13 N -0.306 5.306 14 C 0.015 3.985 15 C -0.389 4.389 16 H 0.088 0.912 17 C -0.195 4.195 18 N -0.550 5.550 19 Si 0.737 3.263 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.209 1.209 23 C -0.040 4.040 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.020 0.980 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.189 -6.708 -0.376 20.331 hybrid contribution 0.533 0.637 0.462 0.951 sum -18.656 -6.070 0.086 19.619 Atomic orbital electron populations 1.22739 0.81110 1.02744 0.99915 1.87897 1.19609 1.28126 1.95404 1.22566 0.94212 0.84600 1.00134 1.21225 0.91900 0.96064 1.05018 1.21503 0.92368 0.98980 1.04375 1.20163 0.88900 0.83140 0.76544 1.90705 1.75080 1.26026 1.50641 1.48517 1.08180 1.05836 1.72280 1.22067 0.97907 0.81502 1.00664 1.23245 0.94634 0.98304 1.03096 1.21407 0.85533 0.89604 0.97199 0.90432 1.43817 1.07435 1.76339 1.03034 1.20834 0.97896 0.97325 0.82492 1.19186 1.02156 1.24643 0.92959 0.91243 1.24999 1.00003 0.96910 0.97560 1.70068 1.31662 1.30518 1.22797 0.86298 0.82578 0.77536 0.79892 1.20986 1.21618 1.20895 1.22966 0.77951 1.01057 1.02022 0.94113 0.89659 0.94095 0.93230 0.93257 0.90294 0.90260 0.88898 0.88943 0.91888 0.92087 0.90527 0.90559 0.95025 0.93626 0.97954 0.93607 0.91236 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.21 10.70 -35.23 -0.38 -4.59 16 3 C 0.06 0.55 5.94 37.16 0.22 0.77 16 4 C -0.10 -1.15 4.87 -26.73 -0.13 -1.28 16 5 C -0.13 -1.38 4.89 -27.89 -0.14 -1.51 16 6 C 0.52 8.08 7.85 -10.99 -0.09 7.99 16 7 O -0.55 -10.60 16.24 5.55 0.09 -10.51 16 8 N -0.61 -9.57 3.33 -170.52 -0.57 -10.14 16 9 C 0.10 1.31 6.49 -3.06 -0.02 1.29 16 10 C -0.15 -2.48 6.54 -24.90 -0.16 -2.64 16 11 C 0.17 3.40 3.54 -65.78 -0.23 3.17 16 12 H 0.08 1.54 7.94 -51.93 -0.41 1.12 16 13 N -0.59 -14.18 2.96 -171.03 -0.51 -14.69 16 14 C 0.16 3.79 7.82 59.84 0.47 4.26 16 15 C -0.26 -6.97 9.63 -15.06 -0.15 -7.11 16 16 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 17 C 0.00 0.11 5.08 -17.43 -0.09 0.02 16 18 N -0.91 -25.77 10.67 55.49 0.59 -25.18 16 19 Si 0.91 21.54 29.58 -169.99 -5.03 16.51 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.08 1.55 6.45 -2.53 -0.02 1.54 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 30 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.33 7.28 -51.93 -0.38 0.96 16 37 H 0.03 0.81 7.41 -51.92 -0.38 0.42 16 38 H 0.04 1.19 7.22 -51.93 -0.38 0.81 16 39 H 0.00 0.04 6.03 -51.93 -0.31 -0.27 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.07 1.36 6.03 -51.93 -0.31 1.04 16 42 H 0.07 1.42 8.04 -51.93 -0.42 1.01 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -31.65 338.62 -7.12 -38.77 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -7.21 Total: -3.10 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 0.78 Total: 7.83 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.48 Total: -50.01 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.29 Total: -15.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.65 -7.12 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189085560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.520 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds