Wall clock time and date at job start Mon Mar 30 2020 00:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00289 * 2 1 4 4 C 1.53000 * 109.47171 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47014 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47280 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00003 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00446 * 179.97438 * 6 5 4 9 9 C 1.47025 * 125.64729 * 0.02662 * 8 6 5 10 10 C 1.54319 * 107.27301 * 178.89172 * 9 8 6 11 11 C 1.55160 * 102.94336 * 337.80918 * 10 9 8 12 12 H 1.09004 * 110.99880 * 277.42893 * 11 10 9 13 13 N 1.46498 * 111.00492 * 153.57348 * 11 10 9 14 14 C 1.46492 * 120.00089 * 301.44948 * 13 11 10 15 15 C 1.36939 * 119.99816 * 121.45216 * 13 11 10 16 16 H 1.08004 * 119.99957 * 21.72362 * 15 13 11 17 17 C 1.38803 * 120.00077 * 201.72575 * 15 13 11 18 18 N 1.31623 * 120.00066 * 13.62625 * 17 15 13 19 19 Si 1.86806 * 119.99993 * 193.63032 * 17 15 13 20 20 H 1.48494 * 109.47152 * 59.99755 * 19 17 15 21 21 H 1.48504 * 109.46793 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46953 * 299.99655 * 19 17 15 23 23 C 1.47417 * 125.65034 * 179.97438 * 8 6 5 24 24 H 1.09006 * 109.47012 * 60.00339 * 1 2 3 25 25 H 1.09001 * 109.47158 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47407 * 300.00173 * 1 2 3 27 27 H 1.08998 * 109.47100 * 59.99597 * 3 2 1 28 28 H 1.09005 * 109.46985 * 299.99952 * 3 2 1 29 29 H 1.08996 * 109.47257 * 60.00237 * 4 3 2 30 30 H 1.08997 * 109.46925 * 299.99564 * 4 3 2 31 31 H 1.08998 * 109.47136 * 59.99586 * 5 4 3 32 32 H 1.09005 * 109.47106 * 299.99844 * 5 4 3 33 33 H 1.09002 * 109.88165 * 59.47048 * 9 8 6 34 34 H 1.08999 * 110.00704 * 298.38316 * 9 8 6 35 35 H 1.08992 * 110.72449 * 219.44380 * 10 9 8 36 36 H 1.08999 * 110.71644 * 96.16506 * 10 9 8 37 37 H 1.09007 * 109.46957 * 94.44873 * 14 13 11 38 38 H 1.09003 * 109.47461 * 214.44531 * 14 13 11 39 39 H 1.09002 * 109.47505 * 334.45417 * 14 13 11 40 40 H 0.96998 * 119.99802 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.36830 * 85.33819 * 23 8 6 42 42 H 1.09000 * 110.36746 * 323.01395 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1578 2.5822 -0.0013 6 6 5.6601 2.4633 -0.0013 7 8 6.1817 1.3683 -0.0013 8 7 6.4241 3.5735 -0.0023 9 6 5.9256 4.9567 -0.0030 10 6 7.1563 5.8873 0.0244 11 6 8.2677 4.9766 0.6099 12 1 8.2151 4.9467 1.6983 13 7 9.5930 5.4114 0.1621 14 6 9.8996 5.4707 -1.2692 15 6 10.5454 5.7624 1.0814 16 1 10.4731 5.4038 2.0976 17 6 11.6036 6.5790 0.7072 18 7 11.5594 7.2315 -0.4350 19 14 13.0904 6.7519 1.8248 20 1 13.7175 5.4207 2.0239 21 1 14.0733 7.6746 1.2018 22 1 12.6621 7.2986 3.1374 23 6 7.8980 3.6023 -0.0019 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8568 0.6438 -0.8908 30 1 3.8574 0.6435 0.8891 31 1 3.8366 3.1234 0.8886 32 1 3.8358 3.1229 -0.8913 33 1 5.3104 5.1294 0.8801 34 1 5.3407 5.1419 -0.9039 35 1 6.9777 6.7440 0.6740 36 1 7.4158 6.2132 -0.9829 37 1 9.7208 6.4810 -1.6375 38 1 10.9449 5.2057 -1.4283 39 1 9.2611 4.7698 -1.8069 40 1 12.2991 7.8019 -0.6966 41 1 8.2792 3.5255 -1.0202 42 1 8.2930 2.7943 0.6139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189085560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:48 Heat of formation + Delta-G solvation = -81.306181 kcal Electronic energy + Delta-G solvation = -20846.806487 eV Core-core repulsion = 17633.839717 eV Total energy + Delta-G solvation = -3212.966770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.11465 -39.14115 -38.67945 -36.55349 -34.63444 -33.42303 -31.33665 -29.82369 -28.44583 -28.07739 -26.64066 -25.06110 -23.75825 -22.60811 -20.94174 -20.09264 -18.96267 -18.18527 -17.63743 -17.28906 -17.13502 -16.46453 -16.23220 -15.88710 -15.55533 -15.11740 -14.91591 -14.58122 -14.40694 -14.20900 -13.71706 -13.41018 -13.01438 -12.96678 -12.95133 -12.80826 -12.58295 -12.49348 -12.38050 -12.13145 -12.10515 -11.94180 -11.87431 -11.83252 -11.43580 -10.92216 -10.63695 -10.57404 -9.64397 -8.80928 -7.84611 -5.32247 1.46898 1.49862 1.55854 1.63840 1.94823 2.50983 2.89152 3.27688 3.53325 3.59137 3.93418 4.00021 4.01179 4.18103 4.21505 4.34661 4.37621 4.46223 4.50661 4.54584 4.56431 4.61319 4.66135 4.73576 4.81526 4.89011 4.92281 5.02400 5.14130 5.19296 5.24247 5.30504 5.32867 5.42984 5.62668 5.70444 6.29105 6.30212 6.59727 7.12214 7.16647 7.83401 8.26882 9.18474 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.053064 B = 0.003012 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.536688 B = 9294.956093 C = 9431.808632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.064 3.936 4 C -0.102 4.102 5 C -0.118 4.118 6 C 0.517 3.483 7 O -0.597 6.597 8 N -0.615 5.615 9 C 0.109 3.891 10 C -0.143 4.143 11 C 0.165 3.835 12 H 0.074 0.926 13 N -0.603 5.603 14 C 0.177 3.823 15 C -0.268 4.268 16 H 0.071 0.929 17 C -0.049 4.049 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.283 1.283 21 H -0.294 1.294 22 H -0.273 1.273 23 C 0.095 3.905 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.012 0.988 38 H 0.014 0.986 39 H 0.028 0.972 40 H 0.249 0.751 41 H 0.056 0.944 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.480 -5.335 0.308 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.012 4.012 4 C -0.140 4.140 5 C -0.157 4.157 6 C 0.308 3.692 7 O -0.478 6.478 8 N -0.348 5.348 9 C -0.013 4.013 10 C -0.183 4.183 11 C 0.056 3.944 12 H 0.092 0.908 13 N -0.325 5.325 14 C 0.033 3.967 15 C -0.398 4.398 16 H 0.089 0.911 17 C -0.245 4.245 18 N -0.581 5.581 19 Si 0.796 3.204 20 H -0.209 1.209 21 H -0.220 1.220 22 H -0.199 1.199 23 C -0.030 4.030 24 H 0.071 0.929 25 H 0.109 0.891 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.030 0.970 38 H 0.033 0.967 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.016 -6.006 0.232 22.822 hybrid contribution 1.343 0.338 0.290 1.415 sum -20.673 -5.667 0.522 21.442 Atomic orbital electron populations 1.22920 0.79325 1.03673 1.01100 1.87849 1.21678 1.29366 1.95686 1.22580 0.92283 0.84370 1.01980 1.21161 0.93889 0.96161 1.02807 1.21521 0.87770 0.99113 1.07314 1.21156 0.90934 0.82062 0.75012 1.90689 1.76367 1.27978 1.52766 1.48601 1.06637 1.07396 1.72203 1.22219 0.96523 0.78542 1.04030 1.23074 0.94678 0.98562 1.02011 1.21545 0.84721 0.90859 0.97234 0.90812 1.43977 1.09198 1.76637 1.02663 1.20520 0.96496 0.96668 0.83040 1.19498 1.03004 1.23897 0.93405 0.91148 1.25723 1.02494 0.97208 0.99046 1.70216 1.32078 1.31414 1.24352 0.85329 0.79351 0.77172 0.78500 1.20929 1.21989 1.19876 1.22566 0.80515 0.99491 1.00476 0.92877 0.89056 0.92864 0.91279 0.91310 0.92613 0.92584 0.85701 0.85766 0.88384 0.88773 0.89732 0.91906 0.97014 0.96722 0.95407 0.94170 0.92632 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.43 -8.44 10.70 -148.98 -1.59 -10.03 16 3 C 0.06 0.96 5.94 71.98 0.43 1.39 16 4 C -0.10 -2.08 4.87 30.59 0.15 -1.93 16 5 C -0.12 -2.01 4.89 29.85 0.15 -1.86 16 6 C 0.52 14.99 7.85 87.66 0.69 15.68 16 7 O -0.60 -23.31 16.24 -3.05 -0.05 -23.36 16 8 N -0.61 -17.80 3.33 -811.80 -2.70 -20.50 16 9 C 0.11 2.33 6.49 86.73 0.56 2.89 16 10 C -0.14 -4.33 6.54 31.78 0.21 -4.12 16 11 C 0.17 6.40 3.54 46.39 0.16 6.56 16 12 H 0.07 2.89 7.94 -2.39 -0.02 2.87 16 13 N -0.60 -29.56 2.96 -695.01 -2.06 -31.62 16 14 C 0.18 8.67 7.82 127.77 1.00 9.67 16 15 C -0.27 -14.52 9.63 84.03 0.81 -13.71 16 16 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 17 C -0.05 -2.72 5.08 84.86 0.43 -2.29 16 18 N -0.93 -54.32 10.67 21.65 0.23 -54.09 16 19 Si 0.97 44.75 29.58 68.60 2.03 46.78 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.09 3.49 6.45 86.86 0.56 4.05 16 24 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 25 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 30 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 31 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.06 2.09 7.28 -2.39 -0.02 2.07 16 37 H 0.01 0.61 7.41 -2.38 -0.02 0.59 16 38 H 0.01 0.77 7.22 -2.39 -0.02 0.75 16 39 H 0.03 1.18 6.03 -2.39 -0.01 1.17 16 40 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.06 2.18 6.03 -2.39 -0.01 2.17 16 42 H 0.05 2.03 8.04 -2.39 -0.02 2.02 16 Total: -1.00 -71.79 338.62 3.23 -68.56 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.98 Total: 6.39 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 6.39 Total: 17.87 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -4.53 Total: -106.21 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.64 Total: -33.40 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -71.79 3.23 -68.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189085560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.745 kcal (2) G-P(sol) polarization free energy of solvation -71.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds