Wall clock time and date at job start Mon Mar 30 2020 01:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00006 * 2 1 4 4 H 1.08997 * 109.47728 * 330.00527 * 3 2 1 5 5 C 1.53008 * 109.46775 * 90.00681 * 3 2 1 6 6 C 1.52999 * 109.46786 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47217 * 299.99566 * 6 5 3 8 8 C 1.52998 * 109.46917 * 60.00476 * 7 6 5 9 9 C 1.53002 * 109.47141 * 299.99824 * 8 7 6 10 10 H 1.09001 * 109.47243 * 300.00629 * 9 8 7 11 11 O 1.42896 * 109.47245 * 180.02562 * 9 8 7 12 12 C 1.42897 * 114.00554 * 90.00024 * 11 9 8 13 13 C 1.52996 * 109.47598 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47303 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.46929 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46929 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47348 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47057 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 300.00068 * 21 19 17 24 24 H 1.48504 * 109.47102 * 60.00417 * 21 19 17 25 25 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46558 * 299.99851 * 1 2 3 27 27 H 1.09003 * 109.47277 * 59.99470 * 1 2 3 28 28 H 1.09003 * 109.46415 * 299.99400 * 5 3 2 29 29 H 1.08993 * 109.47210 * 59.99953 * 5 3 2 30 30 H 1.09001 * 109.47449 * 59.99424 * 6 5 3 31 31 H 1.08999 * 109.46954 * 179.97438 * 6 5 3 32 32 H 1.09005 * 109.47029 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.46795 * 300.00258 * 7 6 5 34 34 H 1.09005 * 109.46951 * 180.02562 * 8 7 6 35 35 H 1.08997 * 109.47658 * 59.99774 * 8 7 6 36 36 H 1.09000 * 109.46801 * 59.99776 * 12 11 9 37 37 H 1.08997 * 109.46663 * 300.00559 * 12 11 9 38 38 H 1.09004 * 109.47164 * 59.99534 * 13 12 11 39 39 H 1.09006 * 109.46801 * 300.00175 * 13 12 11 40 40 H 1.09000 * 109.46986 * 59.99807 * 14 13 12 41 41 H 1.09002 * 109.46857 * 299.99673 * 14 13 12 42 42 H 1.09000 * 109.47441 * 60.00090 * 15 14 13 43 43 H 1.09002 * 109.47087 * 299.99536 * 15 14 13 44 44 H 1.09001 * 109.47671 * 60.00109 * 16 15 14 45 45 H 1.09006 * 109.47297 * 299.99829 * 16 15 14 46 46 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9995 -0.5137 5 6 2.2178 1.7713 1.4426 6 6 2.8407 3.1687 1.4426 7 6 4.1895 3.1259 0.7215 8 6 3.9819 2.6602 -0.7210 9 6 3.3590 1.2627 -0.7211 10 1 4.0239 0.5685 -0.2072 11 8 3.1657 0.8274 -2.0684 12 6 4.2793 0.1189 -2.6158 13 6 3.9629 -0.2959 -4.0541 14 6 5.1551 -1.0551 -4.6400 15 6 4.8383 -1.4705 -6.0780 16 6 6.0307 -2.2291 -6.6641 17 6 5.7185 -2.6388 -8.0804 18 1 4.7648 -2.3840 -8.5185 19 6 6.6504 -3.3389 -8.8168 20 7 7.8116 -3.6497 -8.2832 21 14 6.2631 -3.8474 -10.5721 22 1 7.4210 -4.5825 -11.1414 23 1 5.0658 -4.7258 -10.5803 24 1 5.9949 -2.6374 -11.3902 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 1.2569 1.8013 1.9564 29 1 2.8830 1.0773 1.9563 30 1 2.1758 3.8629 0.9287 31 1 2.9882 3.5007 2.4703 32 1 4.6334 4.1215 0.7219 33 1 4.8543 2.4317 1.2354 34 1 4.9429 2.6293 -1.2347 35 1 3.3170 3.3543 -1.2349 36 1 4.4751 -0.7697 -2.0157 37 1 5.1586 0.7630 -2.6089 38 1 3.7673 0.5929 -4.6540 39 1 3.0834 -0.9399 -4.0613 40 1 5.3502 -1.9440 -4.0400 41 1 6.0347 -0.4115 -4.6327 42 1 4.6429 -0.5819 -6.6783 43 1 3.9587 -2.1142 -6.0849 44 1 6.2266 -3.1177 -6.0641 45 1 6.9101 -1.5850 -6.6573 46 1 8.0125 -3.3860 -7.3716 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224374686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:47 Heat of formation + Delta-G solvation = -163.787141 kcal Electronic energy + Delta-G solvation = -20763.344649 eV Core-core repulsion = 17650.341579 eV Total energy + Delta-G solvation = -3113.003069 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.198 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.69586 -38.54436 -37.33615 -36.76985 -35.01428 -32.14560 -31.18858 -30.29936 -27.78321 -27.26818 -25.16595 -23.46969 -23.16654 -22.62576 -21.91816 -20.95893 -18.87789 -17.92933 -17.60669 -17.08477 -16.65463 -16.13836 -15.92418 -15.66435 -15.37787 -15.08726 -14.74059 -14.54765 -14.45163 -14.23001 -14.01641 -13.72253 -13.22735 -13.01072 -12.78218 -12.65691 -12.62231 -12.24806 -12.07255 -12.00107 -11.96038 -11.86271 -11.71771 -11.63689 -11.52879 -11.45378 -11.32256 -10.69638 -10.61276 -10.55380 -10.28966 -8.70881 -6.41040 1.51428 1.60569 1.80155 2.51544 2.57170 2.75897 3.14158 3.64338 3.85922 3.90093 3.95899 4.01775 4.11328 4.15789 4.16595 4.27491 4.28827 4.31526 4.42021 4.42947 4.49387 4.52756 4.63993 4.74189 4.78214 4.79870 4.81560 4.88286 4.91518 4.95660 5.06977 5.10104 5.13620 5.17388 5.19527 5.24413 5.26309 5.40570 5.46888 5.55767 6.00300 6.17407 6.24290 6.26115 6.56854 7.41492 8.70114 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.035254 B = 0.002534 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.037957 B =11046.339680 C =11553.188420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.091 3.909 4 H 0.066 0.934 5 C -0.134 4.134 6 C -0.116 4.116 7 C -0.117 4.117 8 C -0.137 4.137 9 C 0.087 3.913 10 H 0.061 0.939 11 O -0.395 6.395 12 C 0.070 3.930 13 C -0.106 4.106 14 C -0.107 4.107 15 C -0.093 4.093 16 C 0.005 3.995 17 C -0.623 4.623 18 H 0.050 0.950 19 C -0.042 4.042 20 N -0.939 5.939 21 Si 1.119 2.881 22 H -0.282 1.282 23 H -0.268 1.268 24 H -0.268 1.268 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.048 0.952 44 H -0.012 1.012 45 H -0.011 1.011 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.100 15.275 22.764 30.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.326 6.326 3 C 0.034 3.966 4 H 0.084 0.916 5 C -0.171 4.171 6 C -0.153 4.153 7 C -0.155 4.155 8 C -0.174 4.174 9 C 0.029 3.971 10 H 0.079 0.921 11 O -0.315 6.315 12 C -0.007 4.007 13 C -0.143 4.143 14 C -0.144 4.144 15 C -0.131 4.131 16 C -0.032 4.032 17 C -0.660 4.660 18 H 0.068 0.932 19 C -0.239 4.239 20 N -0.576 5.576 21 Si 0.940 3.060 22 H -0.207 1.207 23 H -0.193 1.193 24 H -0.193 1.193 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.006 0.994 45 H 0.007 0.993 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.559 14.370 21.364 28.647 hybrid contribution -0.315 0.647 1.394 1.569 sum -12.874 15.017 22.758 30.152 Atomic orbital electron populations 1.22907 0.79856 1.03487 1.00544 1.87897 1.21189 1.28319 1.95177 1.22332 0.93625 0.84714 0.95976 0.91622 1.22000 1.02417 0.97928 0.94789 1.21537 0.96339 0.95590 1.01852 1.21547 0.97905 1.02366 0.93659 1.22015 1.01233 0.95386 0.98805 1.22360 0.96267 0.96044 0.82425 0.92138 1.87868 1.40667 1.74717 1.28243 1.22498 0.88845 0.95112 0.94210 1.21397 0.98300 1.00337 0.94294 1.21443 0.97831 0.99659 0.95493 1.21334 0.97754 0.98910 0.95063 1.19219 0.94614 0.94040 0.95287 1.22566 1.03842 1.39417 1.00224 0.93192 1.27541 0.92760 0.93980 1.09646 1.70919 1.23837 1.46417 1.16431 0.82921 0.76131 0.77167 0.69802 1.20701 1.19347 1.19280 0.89082 0.92505 0.94065 0.90245 0.91346 0.91226 0.89697 0.89961 0.91541 0.91363 0.91077 0.93438 0.92539 0.91351 0.91907 0.92424 0.92039 0.93110 0.93335 0.99413 0.99254 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.82 113.37 1.23 1.69 16 2 O -0.41 -9.45 10.24 -139.79 -1.43 -10.88 16 3 C 0.09 1.75 2.30 30.60 0.07 1.83 16 4 H 0.07 1.24 7.79 -2.39 -0.02 1.22 16 5 C -0.13 -1.80 5.54 30.60 0.17 -1.63 16 6 C -0.12 -1.18 5.92 30.60 0.18 -1.00 16 7 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 8 C -0.14 -2.27 5.54 30.59 0.17 -2.10 16 9 C 0.09 1.86 2.29 30.60 0.07 1.93 16 10 H 0.06 1.33 7.79 -2.39 -0.02 1.31 16 11 O -0.40 -10.79 9.88 -139.79 -1.38 -12.17 16 12 C 0.07 1.85 5.75 71.98 0.41 2.27 16 13 C -0.11 -3.16 5.58 30.59 0.17 -2.99 16 14 C -0.11 -3.72 5.21 30.59 0.16 -3.56 16 15 C -0.09 -4.04 5.15 30.59 0.16 -3.88 16 16 C 0.01 0.30 4.28 29.85 0.13 0.42 16 17 C -0.62 -37.32 9.11 25.60 0.23 -37.08 16 18 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 19 C -0.04 -2.55 5.46 84.65 0.46 -2.09 16 20 N -0.94 -60.24 13.65 21.45 0.29 -59.95 16 21 Si 1.12 51.69 29.90 68.60 2.05 53.74 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 0.69 7.87 -2.38 -0.02 0.68 16 27 H 0.04 0.68 8.09 -2.39 -0.02 0.66 16 28 H 0.08 0.90 7.87 -2.39 -0.02 0.88 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 1.17 7.87 -2.38 -0.02 1.15 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.26 8.08 -2.39 -0.02 1.24 16 37 H 0.06 1.36 7.87 -2.39 -0.02 1.34 16 38 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.05 2.16 8.14 -2.39 -0.02 2.15 16 43 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 44 H -0.01 -0.72 8.01 -2.39 -0.02 -0.74 16 45 H -0.01 -0.62 8.01 -2.38 -0.02 -0.64 16 46 H 0.25 16.54 7.22 -92.71 -0.67 15.87 16 Total: -1.00 -70.37 363.93 4.31 -66.06 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.99 Total: 10.61 kcal Atomic # 6 Polarization: -51.20 SS G_CDS: 3.79 Total: -47.40 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.29 Total: -59.95 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -2.81 Total: -23.06 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 2.05 Total: 53.74 kcal Total: -70.37 4.31 -66.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224374686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.731 kcal (2) G-P(sol) polarization free energy of solvation -70.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds