Wall clock time and date at job start Mon Mar 30 2020 01:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99994 * 2 1 4 4 H 1.48504 * 109.46874 * 90.00242 * 3 2 1 5 5 H 1.48507 * 109.46994 * 209.99937 * 3 2 1 6 6 H 1.48494 * 109.47307 * 329.99895 * 3 2 1 7 7 C 1.37883 * 119.99968 * 179.72474 * 2 1 3 8 8 H 1.07993 * 119.99960 * 335.94719 * 7 2 1 9 9 C 1.50703 * 119.99938 * 155.94475 * 7 2 1 10 10 C 1.52995 * 109.47151 * 294.25819 * 9 7 2 11 11 C 1.53001 * 109.47477 * 300.00182 * 10 9 7 12 12 C 1.53003 * 109.46610 * 300.00028 * 11 10 9 13 13 N 1.46903 * 109.46769 * 179.97438 * 12 11 10 14 14 C 1.46903 * 111.00077 * 83.53376 * 13 12 11 15 15 H 1.08999 * 109.51821 * 326.72576 * 14 13 12 16 16 C 1.53120 * 109.52269 * 206.59626 * 14 13 12 17 17 C 1.53046 * 109.27155 * 182.50098 * 16 14 13 18 18 N 1.46839 * 109.57463 * 59.08436 * 17 16 14 19 19 C 1.46843 * 111.20474 * 298.28984 * 18 17 16 20 20 C 1.53038 * 109.52395 * 61.73621 * 19 18 17 21 21 H 1.08994 * 109.50265 * 180.88585 * 20 19 18 22 22 F 1.39901 * 109.50068 * 60.76889 * 20 19 18 23 23 C 1.53001 * 109.47069 * 60.00277 * 12 11 10 24 24 C 1.52997 * 109.46678 * 299.99371 * 23 12 11 25 25 H 0.97000 * 119.99748 * 174.94203 * 1 2 3 26 26 H 1.08994 * 109.46698 * 54.25837 * 9 7 2 27 27 H 1.09007 * 109.47148 * 59.99977 * 10 9 7 28 28 H 1.08996 * 109.47152 * 180.02562 * 10 9 7 29 29 H 1.08997 * 109.47519 * 179.97438 * 11 10 9 30 30 H 1.08996 * 109.47019 * 59.99810 * 11 10 9 31 31 H 1.08996 * 109.47252 * 299.99639 * 12 11 10 32 32 H 1.00903 * 111.00296 * 207.48556 * 13 12 11 33 33 H 1.08994 * 109.50208 * 302.37904 * 16 14 13 34 34 H 1.08997 * 109.50349 * 62.50021 * 16 14 13 35 35 H 1.08998 * 109.41290 * 299.06477 * 17 16 14 36 36 H 1.08999 * 109.44922 * 179.12707 * 17 16 14 37 37 H 1.00903 * 111.00199 * 174.18317 * 18 17 16 38 38 H 1.09005 * 109.45574 * 301.72628 * 19 18 17 39 39 H 1.08995 * 109.46697 * 181.75892 * 19 18 17 40 40 H 1.09007 * 109.46994 * 179.97438 * 23 12 11 41 41 H 1.08996 * 109.47605 * 59.99578 * 23 12 11 42 42 H 1.08997 * 109.47766 * 300.00221 * 24 23 12 43 43 H 1.09011 * 109.47017 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6527 -0.7000 7 6 2.0046 -1.1941 0.0057 8 1 1.5349 -2.0869 0.3912 9 6 3.4134 -1.2533 -0.5260 10 6 3.4037 -0.9680 -2.0290 11 6 2.5452 -2.0151 -2.7415 12 6 3.1270 -3.4078 -2.4905 13 7 2.3025 -4.4133 -3.1740 14 6 2.6885 -4.5393 -4.5858 15 1 3.0141 -3.5696 -4.9622 16 6 1.4893 -5.0288 -5.4024 17 6 1.9143 -5.2178 -6.8605 18 7 3.0100 -6.1928 -6.9311 19 6 4.1890 -5.7213 -6.1936 20 6 3.8323 -5.5488 -4.7154 21 1 4.7033 -5.1838 -4.1712 22 9 3.4312 -6.7797 -4.1850 23 6 3.1366 -3.6932 -0.9874 24 6 3.9950 -2.6460 -0.2751 25 1 -0.4850 -0.8368 -0.0741 26 1 4.0249 -0.5073 -0.0185 27 1 2.9892 0.0243 -2.2079 28 1 4.4226 -1.0112 -2.4137 29 1 2.5379 -1.8116 -3.8123 30 1 1.5263 -1.9723 -2.3569 31 1 4.1460 -3.4506 -2.8751 32 1 2.3552 -5.3045 -2.7039 33 1 1.1389 -5.9794 -5.0003 34 1 0.6874 -4.2925 -5.3486 35 1 2.2505 -4.2637 -7.2664 36 1 1.0667 -5.5811 -7.4415 37 1 3.2439 -6.4051 -7.8894 38 1 4.5145 -4.7648 -6.6027 39 1 4.9935 -6.4503 -6.2905 40 1 3.5507 -4.6855 -0.8086 41 1 2.1177 -3.6503 -0.6028 42 1 5.0140 -2.6888 -0.6595 43 1 4.0023 -2.8495 0.7959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246104195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:12 Heat of formation + Delta-G solvation = -89.523341 kcal Electronic energy + Delta-G solvation = -22220.988700 eV Core-core repulsion = 19020.038397 eV Total energy + Delta-G solvation = -3200.950303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.62778 -40.19932 -38.85826 -36.14926 -34.22794 -32.04684 -31.52008 -31.33284 -28.98549 -26.03334 -24.11022 -24.00481 -23.38069 -21.88005 -20.83427 -20.53744 -18.68885 -18.22529 -17.11609 -16.82007 -16.38997 -16.02420 -15.77110 -15.65258 -15.40696 -15.15452 -15.00958 -14.62645 -14.27622 -13.89421 -13.61842 -13.25681 -13.15524 -12.95946 -12.79489 -12.68447 -12.54419 -12.31047 -12.14799 -11.90062 -11.80621 -11.62834 -11.46181 -11.43182 -11.04781 -10.87283 -10.61948 -10.13608 -9.46867 -9.30723 -8.59187 -6.14396 1.50652 1.54932 1.73593 2.57807 3.01131 3.15675 3.18050 3.49294 3.59743 3.74906 3.86770 3.97720 4.03916 4.17408 4.28275 4.32799 4.47597 4.55176 4.58400 4.61392 4.68865 4.73465 4.79275 4.82135 4.83251 4.85848 4.92026 5.04022 5.12279 5.15440 5.27466 5.42697 5.48298 5.60583 5.65736 5.82656 5.96322 6.17626 6.18670 6.32365 6.39038 6.46885 6.76623 7.56286 8.75010 Molecular weight = 270.18amu Principal moments of inertia in cm(-1) A = 0.030624 B = 0.004797 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.087585 B = 5836.114735 C = 6091.394444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.018 4.018 3 Si 1.076 2.924 4 H -0.279 1.279 5 H -0.244 1.244 6 H -0.294 1.294 7 C -0.579 4.579 8 H 0.018 0.982 9 C 0.008 3.992 10 C -0.109 4.109 11 C -0.081 4.081 12 C 0.108 3.892 13 N -0.689 5.689 14 C 0.065 3.935 15 H 0.091 0.909 16 C -0.104 4.104 17 C 0.062 3.938 18 N -0.696 5.696 19 C 0.038 3.962 20 C 0.062 3.938 21 H 0.090 0.910 22 F -0.216 7.216 23 C -0.103 4.103 24 C -0.094 4.094 25 H 0.250 0.750 26 H 0.023 0.977 27 H 0.034 0.966 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.342 0.658 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.360 0.640 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.039 0.961 42 H 0.066 0.934 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.586 -9.946 -15.274 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.216 4.216 3 Si 0.899 3.101 4 H -0.205 1.205 5 H -0.167 1.167 6 H -0.221 1.221 7 C -0.617 4.617 8 H 0.036 0.964 9 C -0.011 4.011 10 C -0.147 4.147 11 C -0.119 4.119 12 C -0.001 4.001 13 N -0.320 5.320 14 C -0.046 4.046 15 H 0.109 0.891 16 C -0.143 4.143 17 C -0.068 4.068 18 N -0.329 5.329 19 C -0.092 4.092 20 C 0.024 3.976 21 H 0.108 0.892 22 F -0.197 7.197 23 C -0.141 4.141 24 C -0.132 4.132 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.180 0.820 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.622 -8.296 -14.789 20.009 hybrid contribution 0.389 -1.549 0.044 1.598 sum 11.011 -9.845 -14.745 20.870 Atomic orbital electron populations 1.70937 1.08784 1.29284 1.48671 1.26939 0.95821 1.05901 0.92939 0.83626 0.76156 0.72511 0.77822 1.20490 1.16719 1.22102 1.22006 1.00056 0.95508 1.44144 0.96380 1.19122 0.94788 0.94331 0.92868 1.21731 0.98081 0.97409 0.97469 1.21199 0.99284 0.93789 0.97656 1.21339 0.93908 0.91705 0.93139 1.60472 1.57404 1.11989 1.02104 1.22270 0.94531 0.98158 0.89616 0.89060 1.21503 0.97060 1.01187 0.94517 1.21936 0.94911 0.94134 0.95810 1.60123 1.07840 1.45259 1.19703 1.22440 0.93615 1.01288 0.91880 1.22476 0.98450 0.80952 0.95707 0.89174 1.92766 1.92641 1.46315 1.88002 1.21489 1.00043 0.97861 0.94744 1.21327 0.97769 0.95254 0.98831 0.94125 0.95925 0.94698 0.92121 0.93250 0.94743 0.93036 0.83826 0.92388 0.91394 0.94019 0.89203 0.81996 0.91832 0.88581 0.92090 0.94253 0.91549 0.93749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.64 13.70 21.45 0.29 -59.35 16 2 C -0.02 -1.04 5.24 84.66 0.44 -0.60 16 3 Si 1.08 50.37 26.51 68.60 1.82 52.19 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.24 -10.00 6.03 99.48 0.60 -9.40 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.58 -32.13 6.92 25.60 0.18 -31.95 16 8 H 0.02 1.12 6.75 -2.91 -0.02 1.10 16 9 C 0.01 0.36 2.14 -11.54 -0.02 0.33 16 10 C -0.11 -4.40 5.02 30.59 0.15 -4.24 16 11 C -0.08 -3.19 5.17 30.60 0.16 -3.04 16 12 C 0.11 3.59 2.32 44.92 0.10 3.69 16 13 N -0.69 -21.33 6.06 -469.05 -2.84 -24.17 16 14 C 0.07 1.61 2.18 44.99 0.10 1.71 16 15 H 0.09 2.22 7.01 -2.39 -0.02 2.20 16 16 C -0.10 -2.48 5.58 30.65 0.17 -2.31 16 17 C 0.06 1.08 6.55 86.33 0.57 1.65 16 18 N -0.70 -11.60 6.78 -514.02 -3.49 -15.08 16 19 C 0.04 0.61 6.30 86.33 0.54 1.16 16 20 C 0.06 1.34 3.65 30.65 0.11 1.45 16 21 H 0.09 1.76 7.58 -2.39 -0.02 1.74 16 22 F -0.22 -5.83 15.81 44.97 0.71 -5.12 16 23 C -0.10 -3.82 4.98 30.59 0.15 -3.67 16 24 C -0.09 -3.57 5.42 30.59 0.17 -3.40 16 25 H 0.25 16.26 8.73 -92.71 -0.81 15.45 16 26 H 0.02 1.01 6.45 -2.39 -0.02 1.00 16 27 H 0.03 1.50 5.93 -2.38 -0.01 1.49 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 1.74 7.34 -2.39 -0.02 1.72 16 30 H 0.03 1.70 7.22 -2.39 -0.02 1.68 16 31 H 0.05 1.49 7.28 -2.39 -0.02 1.47 16 32 H 0.34 10.58 7.41 -89.69 -0.67 9.91 16 33 H 0.06 1.58 7.91 -2.39 -0.02 1.56 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.36 4.18 8.90 -89.69 -0.80 3.39 16 38 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.93 8.12 -2.38 -0.02 1.91 16 41 H 0.04 1.78 6.51 -2.39 -0.02 1.76 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -65.92 318.86 -1.29 -67.21 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -0.60 Total: 23.55 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 2.82 Total: -39.23 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -6.04 Total: -98.60 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.71 Total: -5.12 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 1.82 Total: 52.19 kcal Total: -65.92 -1.29 -67.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246104195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.316 kcal (2) G-P(sol) polarization free energy of solvation -65.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds