Wall clock time and date at job start Mon Mar 30 2020 00:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34232 * 116.99780 * 2 1 4 4 O 1.20831 * 119.99970 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99896 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.46314 * 39.98016 * 5 3 2 7 7 C 1.53037 * 109.46142 * 280.00121 * 5 3 2 8 8 C 1.53122 * 109.28044 * 180.81577 * 7 5 3 9 9 C 1.53119 * 109.15706 * 57.65430 * 8 7 5 10 10 H 1.09002 * 109.50589 * 62.32820 * 9 8 7 11 11 N 1.46901 * 109.50161 * 182.40800 * 9 8 7 12 12 C 1.46907 * 111.00060 * 204.99881 * 11 9 8 13 13 C 1.52996 * 109.47007 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.46929 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 13 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46683 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47426 * 119.99743 * 19 17 15 22 22 H 1.48501 * 109.46833 * 239.99986 * 19 17 15 23 23 C 1.53034 * 109.28140 * 302.34530 * 9 8 7 24 24 N 1.46844 * 109.45300 * 159.95616 * 5 3 2 25 25 H 1.08999 * 109.46547 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46644 * 299.99720 * 1 2 3 27 27 H 1.08997 * 109.47581 * 59.99755 * 1 2 3 28 28 H 1.08998 * 109.50345 * 60.87334 * 7 5 3 29 29 H 1.09004 * 109.50261 * 300.75714 * 7 5 3 30 30 H 1.08997 * 109.52289 * 297.75120 * 8 7 5 31 31 H 1.08996 * 109.57867 * 177.58771 * 8 7 5 32 32 H 1.00894 * 111.00392 * 81.04625 * 11 9 8 33 33 H 1.09000 * 109.46801 * 59.99734 * 12 11 9 34 34 H 1.08994 * 109.47121 * 299.99926 * 12 11 9 35 35 H 1.09000 * 109.47441 * 60.00268 * 13 12 11 36 36 H 1.09002 * 109.47087 * 299.99714 * 13 12 11 37 37 H 1.09001 * 109.47671 * 60.00109 * 14 13 12 38 38 H 1.08998 * 109.47454 * 300.00107 * 14 13 12 39 39 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.46646 * 179.19844 * 23 9 8 41 41 H 1.09005 * 109.46444 * 299.16623 * 23 9 8 42 42 H 1.00901 * 111.00557 * 57.65099 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9699 0.5077 -0.6612 7 6 4.0892 1.0511 1.4202 8 6 5.6170 1.1523 1.4184 9 6 6.0292 2.5231 0.8746 10 1 5.6461 3.3050 1.5304 11 7 7.4946 2.6068 0.8156 12 6 7.9453 4.0034 0.8834 13 6 9.4732 4.0499 0.8200 14 6 9.9426 5.5044 0.8913 15 6 11.4477 5.5502 0.8294 16 1 12.0128 4.6335 0.7478 17 6 12.1028 6.7625 0.8717 18 7 11.4143 7.8791 0.9656 19 14 13.9684 6.8194 0.7943 20 1 14.5017 5.4373 0.6912 21 1 14.3909 7.6034 -0.3939 22 1 14.4954 7.4625 2.0247 23 6 5.4501 2.7043 -0.5303 24 7 3.9864 2.5996 -0.4750 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 3.7904 0.0616 1.7662 29 1 3.6749 1.8099 2.0841 30 1 6.0333 0.3690 0.7850 31 1 5.9919 1.0362 2.4353 32 1 7.8498 2.1522 -0.0121 33 1 7.6071 4.4492 1.8188 34 1 7.5293 4.5606 0.0441 35 1 9.8118 3.6040 -0.1152 36 1 9.8889 3.4928 1.6596 37 1 9.6041 5.9500 1.8267 38 1 9.5269 6.0619 0.0520 39 1 11.8752 8.7322 0.9951 40 1 5.7299 3.6851 -0.9148 41 1 5.8450 1.9303 -1.1885 42 1 3.5930 3.3307 0.0984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246226077.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:48 Heat of formation + Delta-G solvation = -103.057540 kcal Electronic energy + Delta-G solvation = -20464.518425 eV Core-core repulsion = 17250.608445 eV Total energy + Delta-G solvation = -3213.909979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01044 -39.16869 -36.82924 -35.79770 -33.53943 -32.01296 -31.62006 -29.53976 -27.93903 -25.96948 -24.24348 -23.53607 -22.19162 -21.12421 -20.85252 -19.92943 -18.08795 -17.29631 -16.68645 -16.33259 -15.81858 -15.37669 -15.02870 -14.57816 -14.44192 -14.28901 -14.04139 -13.74248 -13.20914 -13.07138 -12.58691 -12.42827 -12.28473 -12.17208 -11.73763 -11.57010 -11.52403 -11.35132 -11.15632 -10.88333 -10.82966 -10.63169 -10.59130 -10.41189 -9.74317 -9.35915 -9.13018 -9.03622 -8.34185 -7.97665 -5.99031 -4.01120 1.87189 2.25509 3.31819 3.39190 3.43599 3.87138 4.17827 4.40800 4.46358 4.48098 4.59108 4.73873 4.78508 4.81903 4.86245 5.06323 5.12812 5.16426 5.33991 5.36853 5.49467 5.51880 5.69147 5.81600 5.83337 5.98449 5.99306 6.05174 6.29795 6.45450 6.70433 6.76489 6.97508 7.12796 7.28671 7.42902 7.56415 7.69171 7.83559 8.01345 8.44479 9.06368 9.62972 11.12432 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.061503 B = 0.002523 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.153879 B =11094.125067 C =11328.536859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.468 3.532 4 O -0.497 6.497 5 C 0.098 3.902 6 H 0.117 0.883 7 C -0.146 4.146 8 C -0.104 4.104 9 C 0.048 3.952 10 H 0.077 0.923 11 N -0.682 5.682 12 C 0.058 3.942 13 C -0.107 4.107 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.032 3.968 24 N -0.668 5.668 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.339 0.661 33 H 0.066 0.934 34 H 0.026 0.974 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.259 0.741 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.105 -17.152 -1.289 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.310 3.690 4 O -0.383 6.383 5 C -0.013 4.013 6 H 0.134 0.866 7 C -0.186 4.186 8 C -0.142 4.142 9 C -0.064 4.064 10 H 0.096 0.904 11 N -0.312 5.312 12 C -0.070 4.070 13 C -0.145 4.145 14 C -0.016 4.016 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.099 4.099 24 N -0.301 5.301 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.157 0.843 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -20.303 -16.926 -1.277 26.464 hybrid contribution 0.729 0.669 -0.006 0.990 sum -19.574 -16.257 -1.283 25.477 Atomic orbital electron populations 1.23279 0.76164 1.03738 1.02647 1.86498 1.23541 1.33388 1.84177 1.23650 0.91747 0.81423 0.72168 1.90669 1.66917 1.36330 1.44410 1.21165 0.87023 0.95248 0.97885 0.86559 1.22244 0.97556 1.03585 0.95219 1.21536 0.92649 0.97161 1.02901 1.22369 0.89581 0.97892 0.96547 0.90440 1.60600 1.07101 1.17696 1.45799 1.22179 0.97981 0.86684 1.00150 1.21621 0.91272 1.00967 1.00636 1.19071 0.95872 0.89565 0.97114 1.21292 0.92026 0.92414 1.49899 0.92613 1.25041 0.98360 0.95810 0.95413 1.69978 1.35243 0.97483 1.50884 0.86535 0.85850 0.78056 0.77562 1.19726 1.21053 1.21032 1.22891 0.86026 1.03539 0.97417 1.60388 1.09829 1.02460 1.57379 0.88001 0.91889 0.91788 0.90025 0.91151 0.91270 0.90324 0.84294 0.91554 0.95570 0.93607 0.92578 0.96632 0.96777 0.93089 0.89653 0.90333 0.82650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.23 10.57 -39.26 -0.41 -3.65 16 3 C 0.47 4.89 7.20 36.00 0.26 5.15 16 4 O -0.50 -6.55 15.94 -18.75 -0.30 -6.85 16 5 C 0.10 0.88 2.94 -68.88 -0.20 0.68 16 6 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 7 C -0.15 -1.18 5.34 -26.65 -0.14 -1.32 16 8 C -0.10 -0.95 5.61 -26.61 -0.15 -1.10 16 9 C 0.05 0.53 2.62 -67.63 -0.18 0.35 16 10 H 0.08 0.92 7.80 -51.93 -0.41 0.52 16 11 N -0.68 -9.07 6.25 -106.64 -0.67 -9.74 16 12 C 0.06 0.97 5.49 -3.82 -0.02 0.94 16 13 C -0.11 -2.18 5.41 -26.73 -0.14 -2.32 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 15 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 19 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 23 C 0.03 0.32 5.81 -3.83 -0.02 0.30 16 24 N -0.67 -6.93 6.28 -107.99 -0.68 -7.60 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 27 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.34 4.20 8.46 -39.29 -0.33 3.86 16 33 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 34 H 0.03 0.43 7.47 -51.93 -0.39 0.04 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.09 0.97 7.49 -51.93 -0.39 0.58 16 41 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 42 H 0.35 3.84 8.31 -39.29 -0.33 3.51 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -31.85 343.14 -8.55 -40.40 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.29 Total: 1.14 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -0.08 Total: -9.23 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.61 Total: -43.78 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.71 Total: -10.49 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.85 -8.55 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246226077.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.658 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds