Wall clock time and date at job start Mon Mar 30 2020 01:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47383 * 2 1 4 4 C 1.52998 * 109.47192 * 239.99671 * 2 1 3 5 5 C 1.53001 * 109.47131 * 65.62539 * 4 2 1 6 6 C 1.50698 * 109.47216 * 174.83028 * 5 4 2 7 7 H 1.08007 * 119.99843 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00475 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99367 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00405 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47079 * 59.99928 * 10 8 6 12 12 H 1.48501 * 109.46932 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46877 * 299.99444 * 10 8 6 14 14 N 1.46903 * 109.46726 * 119.99910 * 2 1 3 15 15 C 1.39774 * 111.00028 * 61.04508 * 14 2 1 16 16 C 1.54439 * 111.70230 * 189.17194 * 15 14 2 17 17 C 1.50815 * 109.00576 * 282.50272 * 16 15 14 18 18 C 1.54171 * 112.54500 * 93.10200 * 17 16 15 19 19 C 1.53818 * 111.97276 * 318.48392 * 18 17 16 20 20 O 1.42899 * 109.04947 * 79.59584 * 19 18 17 21 21 C 1.53002 * 108.99138 * 198.53132 * 19 18 17 22 22 N 1.46892 * 109.47053 * 307.07857 * 21 19 18 23 23 C 1.47634 * 110.99812 * 189.94890 * 14 2 1 24 24 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47000 * 300.00642 * 1 2 3 26 26 H 1.08997 * 109.46915 * 60.00206 * 1 2 3 27 27 H 1.09000 * 109.47001 * 185.62627 * 4 2 1 28 28 H 1.09000 * 109.46798 * 305.62774 * 4 2 1 29 29 H 1.08997 * 109.47162 * 294.83230 * 5 4 2 30 30 H 1.08999 * 109.47002 * 54.82579 * 5 4 2 31 31 H 0.97005 * 119.99423 * 180.02562 * 9 8 6 32 32 H 1.08992 * 109.02574 * 309.72209 * 15 14 2 33 33 H 1.09005 * 109.01939 * 68.62650 * 15 14 2 34 34 H 1.08998 * 109.54051 * 42.43390 * 16 15 14 35 35 H 1.08993 * 109.54742 * 162.70337 * 16 15 14 36 36 H 1.08998 * 108.88811 * 332.31758 * 17 16 15 37 37 H 1.08994 * 108.79826 * 213.83331 * 17 16 15 38 38 H 1.08996 * 108.97929 * 197.83969 * 18 17 16 39 39 H 1.09000 * 108.98066 * 79.12865 * 18 17 16 40 40 H 0.96700 * 114.00262 * 57.88880 * 20 19 18 41 41 H 1.09000 * 109.46901 * 67.08396 * 21 19 18 42 42 H 1.09004 * 109.46933 * 187.07821 * 21 19 18 43 43 H 1.00894 * 111.00330 * 56.04789 * 22 21 19 44 44 H 1.00903 * 110.99977 * 180.02562 * 22 21 19 45 45 H 1.08992 * 109.74778 * 269.95988 * 23 14 2 46 46 H 1.08997 * 109.74567 * 30.68418 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6488 0.0769 -2.4945 6 6 2.2585 -0.5644 -3.7143 7 1 2.8642 -1.4528 -3.6116 8 6 2.0432 -0.0172 -4.9613 9 7 1.3053 1.0643 -5.0863 10 14 2.7984 -0.8126 -6.4734 11 1 2.2992 -2.2051 -6.6017 12 1 2.4198 -0.0371 -7.6819 13 1 4.2772 -0.8272 -6.3386 14 7 2.0196 -0.6925 1.1995 15 6 1.5910 -2.0227 1.2200 16 6 1.8996 -2.7015 2.5724 17 6 3.3633 -3.0619 2.6184 18 6 4.2221 -1.9637 3.2766 19 6 3.7940 -0.5547 2.8322 20 8 2.6353 -0.1644 3.5719 21 6 4.9294 0.4272 3.1284 22 7 5.3279 0.3045 4.5369 23 6 3.4759 -0.5095 1.3587 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.1254 -0.8094 -1.2002 28 1 1.5968 -1.7157 -1.3009 29 1 0.5634 0.0869 -2.5934 30 1 2.0144 1.0994 -2.4003 31 1 1.1535 1.4491 -5.9637 32 1 0.5156 -2.0522 1.0449 33 1 2.0954 -2.5708 0.4241 34 1 1.6661 -2.0152 3.3864 35 1 1.2989 -3.6055 2.6723 36 1 3.7187 -3.2246 1.6009 37 1 3.4798 -3.9864 3.1838 38 1 5.2660 -2.1194 3.0045 39 1 4.1247 -2.0389 4.3596 40 1 2.7609 -0.1683 4.5307 41 1 5.7821 0.2005 2.4884 42 1 4.5898 1.4446 2.9342 43 1 5.5858 -0.6455 4.7583 44 1 6.0768 0.9436 4.7578 45 1 4.0062 -1.3097 0.8427 46 1 3.7730 0.4552 0.9472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246564153.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:49 Heat of formation + Delta-G solvation = -53.647564 kcal Electronic energy + Delta-G solvation = -22587.541327 eV Core-core repulsion = 19511.607019 eV Total energy + Delta-G solvation = -3075.934308 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.18233 -37.49825 -34.65750 -33.83570 -33.14452 -31.39157 -30.80311 -28.72587 -26.52666 -25.26857 -24.85771 -23.32350 -21.50804 -20.96678 -19.50673 -18.55492 -16.84661 -16.47189 -16.02373 -15.76420 -15.22106 -14.59271 -14.55235 -14.26250 -14.11221 -13.90306 -13.36274 -13.29426 -12.76733 -12.55038 -12.27251 -12.12056 -12.02310 -11.59115 -11.29176 -11.24800 -11.14968 -10.94404 -10.76598 -10.58349 -10.51542 -10.33544 -10.25478 -10.07251 -9.58228 -9.49530 -9.31825 -9.09489 -8.93389 -8.31279 -7.47840 -5.97128 -3.99447 3.33309 3.37807 3.40190 4.04321 4.41109 4.47185 4.57650 4.66282 4.75175 4.95598 5.18320 5.21180 5.32498 5.36609 5.37913 5.53007 5.56479 5.64278 5.73379 5.83947 5.86748 5.95518 6.05477 6.10066 6.17047 6.20483 6.24791 6.29801 6.43017 6.51743 6.67108 6.68896 6.79335 6.81961 6.90847 7.10568 7.12969 7.62955 7.71185 7.85864 7.94515 8.03274 8.06939 8.46994 9.07407 9.64155 11.13723 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.004314 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.808617 B = 6488.304914 C = 6657.685542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.085 3.915 3 H 0.075 0.925 4 C -0.138 4.138 5 C 0.026 3.974 6 C -0.520 4.520 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.278 1.278 14 N -0.524 5.524 15 C 0.073 3.927 16 C -0.125 4.125 17 C -0.116 4.116 18 C -0.143 4.143 19 C 0.148 3.852 20 O -0.518 6.518 21 C 0.030 3.970 22 N -0.851 5.851 23 C 0.078 3.922 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.019 0.981 30 H 0.014 0.986 31 H 0.260 0.740 32 H 0.073 0.927 33 H 0.017 0.983 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.362 0.638 41 H 0.032 0.968 42 H 0.083 0.917 43 H 0.338 0.662 44 H 0.342 0.658 45 H 0.048 0.952 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.866 -4.716 19.402 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 H 0.093 0.907 4 C -0.177 4.177 5 C -0.011 4.011 6 C -0.558 4.558 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.204 1.204 14 N -0.247 5.247 15 C -0.057 4.057 16 C -0.163 4.163 17 C -0.153 4.153 18 C -0.181 4.181 19 C 0.106 3.894 20 O -0.321 6.321 21 C -0.101 4.101 22 N -0.381 5.381 23 C -0.050 4.050 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.035 0.965 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.208 0.792 41 H 0.050 0.950 42 H 0.101 0.899 43 H 0.151 0.849 44 H 0.154 0.846 45 H 0.066 0.934 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.591 -4.114 19.211 20.176 hybrid contribution 2.193 -1.193 -1.527 2.926 sum 6.785 -5.307 17.684 19.670 Atomic orbital electron populations 1.21872 0.94868 1.01383 1.01649 1.21847 0.95499 0.97684 0.87157 0.90693 1.22262 0.99259 0.99702 0.96500 1.19060 0.96833 0.94869 0.90387 1.21238 1.31207 1.11470 0.91932 0.93106 1.25009 0.95352 0.95025 0.98976 1.69958 1.38848 1.20973 1.23673 0.86700 0.79628 0.79421 0.82496 1.20303 1.21252 1.20362 1.58702 1.11034 1.15166 1.39786 1.20982 1.00679 0.88684 0.95357 1.21619 0.94844 1.00053 0.99751 1.21367 0.96181 0.97187 1.00583 1.22626 0.99193 0.95695 1.00633 1.20928 0.85066 0.90663 0.92761 1.86824 1.34441 1.90229 1.20639 1.22696 0.97516 1.01463 0.88448 1.58727 1.46793 1.11380 1.21220 1.21730 0.89290 1.01467 0.92548 0.93179 0.92909 0.91464 0.93844 0.93442 0.96245 0.96799 0.92998 0.90892 0.96500 0.88929 0.92604 0.92519 0.92779 0.92417 0.91509 0.79207 0.94967 0.89879 0.84908 0.84596 0.93416 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.73 37.16 0.32 -2.10 16 2 C 0.09 1.54 2.32 -67.71 -0.16 1.38 16 3 H 0.07 1.42 7.80 -51.93 -0.41 1.01 16 4 C -0.14 -2.91 3.91 -26.73 -0.10 -3.02 16 5 C 0.03 0.68 4.61 -27.88 -0.13 0.55 16 6 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 7 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 10 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 N -0.52 -8.20 3.14 -231.99 -0.73 -8.92 16 15 C 0.07 1.08 4.19 -6.74 -0.03 1.06 16 16 C -0.12 -1.54 5.61 -27.07 -0.15 -1.69 16 17 C -0.12 -1.28 5.32 -27.21 -0.14 -1.42 16 18 C -0.14 -1.40 3.88 -25.69 -0.10 -1.50 16 19 C 0.15 1.68 0.74 -91.29 -0.07 1.62 16 20 O -0.52 -6.53 9.66 -35.23 -0.34 -6.87 16 21 C 0.03 0.30 5.63 -3.83 -0.02 0.28 16 22 N -0.85 -6.67 9.18 -10.37 -0.10 -6.76 16 23 C 0.08 1.11 3.92 -4.52 -0.02 1.09 16 24 H 0.05 0.83 6.23 -51.93 -0.32 0.51 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.26 6.70 -51.93 -0.35 0.91 16 27 H 0.04 0.92 7.23 -51.93 -0.38 0.55 16 28 H 0.05 1.01 6.92 -51.93 -0.36 0.65 16 29 H 0.02 0.53 6.84 -51.93 -0.36 0.18 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.07 1.12 5.67 -51.93 -0.29 0.83 16 33 H 0.02 0.28 6.15 -51.93 -0.32 -0.04 16 34 H 0.09 1.20 5.80 -51.93 -0.30 0.90 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.70 6.57 -51.93 -0.34 0.36 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.52 7.97 -51.93 -0.41 0.11 16 39 H 0.07 0.58 7.40 -51.93 -0.38 0.19 16 40 H 0.36 3.74 8.57 45.56 0.39 4.13 16 41 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.34 2.29 7.23 -39.29 -0.28 2.01 16 44 H 0.34 2.23 9.08 -39.29 -0.36 1.87 16 45 H 0.05 0.70 6.46 -51.93 -0.34 0.37 16 46 H 0.08 1.13 7.19 -51.93 -0.37 0.76 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -30.54 334.26 -8.68 -39.22 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.26 Total: 5.29 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.01 Total: -17.47 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -0.09 Total: -42.12 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.34 Total: -6.87 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.54 -8.68 -39.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246564153.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.428 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds