Wall clock time and date at job start Mon Mar 30 2020 01:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 300.00129 * 10 9 7 12 12 C 1.52999 * 109.46626 * 299.99539 * 11 10 9 13 13 N 1.46906 * 109.46904 * 179.97438 * 12 11 10 14 14 C 1.46843 * 111.00357 * 291.84386 * 13 12 11 15 15 C 1.53032 * 109.52248 * 185.84005 * 14 13 12 16 16 H 1.08996 * 109.54286 * 60.77581 * 15 14 13 17 17 N 1.46905 * 109.50057 * 180.87673 * 15 14 13 18 18 C 1.53121 * 109.27729 * 300.81249 * 15 14 13 19 19 C 1.53121 * 109.15679 * 57.65963 * 18 15 14 20 20 H 1.09001 * 109.49675 * 182.40226 * 19 18 15 21 21 F 1.39894 * 109.53673 * 62.30474 * 19 18 15 22 22 C 1.46853 * 110.99749 * 56.05028 * 13 12 11 23 23 C 1.52997 * 109.46991 * 60.00378 * 12 11 10 24 24 C 1.52996 * 109.47131 * 299.99311 * 23 12 11 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47502 * 180.02562 * 10 9 7 28 28 H 1.09001 * 109.47289 * 60.00082 * 10 9 7 29 29 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 30 30 H 1.09000 * 109.47050 * 179.97438 * 11 10 9 31 31 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 32 32 H 1.09005 * 109.45649 * 305.85196 * 14 13 12 33 33 H 1.08997 * 109.46660 * 65.81950 * 14 13 12 34 34 H 1.00908 * 110.99589 * 179.79899 * 17 15 14 35 35 H 1.00899 * 111.00220 * 303.75317 * 17 15 14 36 36 H 1.09001 * 109.52423 * 297.75302 * 18 15 14 37 37 H 1.09004 * 109.57548 * 177.59351 * 18 15 14 38 38 H 1.08998 * 109.45940 * 294.17775 * 22 13 12 39 39 H 1.09002 * 109.46194 * 54.14992 * 22 13 12 40 40 H 1.09001 * 109.47289 * 179.97438 * 23 12 11 41 41 H 1.09000 * 109.47611 * 59.99933 * 23 12 11 42 42 H 1.08996 * 109.47452 * 300.00000 * 24 23 12 43 43 H 1.09000 * 109.47054 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 3.1248 -3.5811 -1.2487 12 6 2.2451 -3.6622 -2.4979 13 7 3.0896 -3.5838 -3.6974 14 6 3.6896 -2.2504 -3.8324 15 6 4.4412 -2.1601 -5.1624 16 1 3.7448 -2.3164 -5.9861 17 7 5.0589 -0.8331 -5.2875 18 6 5.5297 -3.2363 -5.2020 19 6 4.8838 -4.6114 -5.0108 20 1 5.6584 -5.3782 -4.9954 21 9 3.9985 -4.8630 -6.0643 22 6 4.1194 -4.6307 -3.6853 23 6 1.2509 -2.4993 -2.4979 24 6 0.3713 -2.5803 -1.2487 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 1.7001 -4.6061 0.0001 28 1 2.8718 -3.6045 0.8905 29 1 3.6698 -2.6372 -1.2487 30 1 3.8333 -4.4094 -1.2485 31 1 1.7001 -4.6061 -2.4980 32 1 2.9045 -1.4946 -3.8069 33 1 4.3845 -2.0798 -3.0102 34 1 5.5642 -0.7500 -6.1569 35 1 4.3681 -0.1029 -5.1995 36 1 6.2485 -3.0571 -4.4024 37 1 6.0401 -3.2043 -6.1646 38 1 4.8122 -4.4490 -2.8637 39 1 3.6464 -5.6038 -3.5530 40 1 0.6245 -2.5567 -3.3881 41 1 1.7959 -1.5553 -2.4980 42 1 -0.1738 -3.5242 -1.2487 43 1 -0.3373 -1.7520 -1.2490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246586487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:19 Heat of formation + Delta-G solvation = -62.078926 kcal Electronic energy + Delta-G solvation = -22752.043104 eV Core-core repulsion = 19552.282880 eV Total energy + Delta-G solvation = -3199.760224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.44138 -39.42882 -36.91717 -34.37251 -32.35880 -31.37114 -29.70236 -28.35907 -27.96215 -24.94632 -23.90986 -22.57714 -21.28602 -20.44479 -19.41103 -18.35645 -16.48671 -15.90758 -15.72586 -15.55323 -15.26239 -14.79900 -14.67409 -14.40261 -13.95732 -13.56619 -13.22329 -13.03304 -12.83045 -12.60283 -12.07184 -11.80175 -11.59362 -11.38705 -11.25951 -11.12699 -10.97218 -10.83588 -10.57955 -10.50045 -10.32596 -10.12937 -9.96170 -9.47741 -9.26588 -8.87536 -8.66897 -8.61185 -8.26242 -7.78918 -5.95235 -3.99508 3.29404 3.38519 3.42387 4.02266 4.38281 4.45708 4.61140 4.76345 4.86263 5.02417 5.24818 5.35304 5.41849 5.55425 5.57802 5.63833 5.70588 5.79581 5.88198 6.01444 6.04991 6.18064 6.29455 6.33184 6.46749 6.52351 6.62869 6.70969 6.78215 6.85296 7.04754 7.10585 7.18733 7.38345 7.39908 7.52256 7.54486 7.61893 7.77323 7.96854 8.18925 8.50910 9.03118 9.63781 11.10593 Molecular weight = 270.18amu Principal moments of inertia in cm(-1) A = 0.020677 B = 0.006692 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.819119 B = 4182.992611 C = 4972.203097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.881 3.119 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.499 4.499 8 H 0.053 0.947 9 C 0.043 3.957 10 C -0.103 4.103 11 C -0.137 4.137 12 C 0.094 3.906 13 N -0.528 5.528 14 C 0.055 3.945 15 C 0.093 3.907 16 H 0.047 0.953 17 N -0.847 5.847 18 C -0.139 4.139 19 C 0.099 3.901 20 H 0.083 0.917 21 F -0.207 7.207 22 C 0.025 3.975 23 C -0.095 4.095 24 C -0.107 4.107 25 H 0.258 0.742 26 H 0.024 0.976 27 H 0.033 0.967 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.338 0.662 35 H 0.346 0.654 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.014 0.986 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.711 -6.819 -9.641 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.709 3.291 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.024 3.976 10 C -0.141 4.141 11 C -0.176 4.176 12 C -0.014 4.014 13 N -0.251 5.251 14 C -0.074 4.074 15 C -0.019 4.019 16 H 0.065 0.935 17 N -0.377 5.377 18 C -0.178 4.178 19 C 0.062 3.938 20 H 0.101 0.899 21 F -0.188 7.188 22 C -0.104 4.104 23 C -0.132 4.132 24 C -0.145 4.145 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.150 0.850 35 H 0.159 0.841 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.058 0.942 41 H 0.092 0.908 42 H 0.033 0.967 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.648 -6.982 -9.433 14.578 hybrid contribution 0.382 1.184 -0.171 1.256 sum 9.031 -5.799 -9.604 14.402 Atomic orbital electron populations 1.69877 1.05798 1.26035 1.51263 1.24924 0.94730 0.98732 0.95515 0.86704 0.80312 0.84494 0.77545 1.19832 1.21117 1.21209 1.21159 0.92617 0.90430 1.49496 0.92848 1.18702 0.92676 0.92044 0.94149 1.21492 0.98144 0.98692 0.95751 1.22071 0.98277 1.00776 0.96437 1.21760 0.93581 1.00071 0.85939 1.62160 1.20425 1.02425 1.40111 1.22139 0.98096 0.91761 0.95369 1.21273 0.94073 0.88451 0.98066 0.93503 1.58628 1.32986 1.03934 1.42157 1.22192 0.98622 0.93739 1.03218 1.21593 0.89980 0.97337 0.84905 0.89916 1.92804 1.71406 1.95397 1.59167 1.22667 0.94906 0.97366 0.95416 1.21503 0.96664 0.97319 0.97753 1.21507 0.98684 0.99495 0.94836 0.93229 0.95819 0.94845 0.93741 0.90989 0.94553 0.91200 0.89471 0.93448 0.84951 0.84114 0.89687 0.91322 0.92768 0.89993 0.94237 0.90785 0.96728 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.50 -13.04 6.61 -34.44 -0.23 -13.27 16 8 H 0.05 1.41 6.71 -52.49 -0.35 1.06 16 9 C 0.04 1.03 2.59 -91.77 -0.24 0.79 16 10 C -0.10 -2.10 5.41 -26.73 -0.14 -2.24 16 11 C -0.14 -2.53 4.26 -26.73 -0.11 -2.65 16 12 C 0.09 1.70 2.37 -67.71 -0.16 1.53 16 13 N -0.53 -8.54 4.65 -226.70 -1.05 -9.59 16 14 C 0.05 0.88 4.21 -3.84 -0.02 0.86 16 15 C 0.09 1.25 3.28 -67.63 -0.22 1.03 16 16 H 0.05 0.68 7.91 -51.93 -0.41 0.27 16 17 N -0.85 -10.19 9.25 -4.60 -0.04 -10.24 16 18 C -0.14 -1.63 5.37 -26.61 -0.14 -1.78 16 19 C 0.10 1.19 4.17 -26.65 -0.11 1.08 16 20 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 21 F -0.21 -3.02 16.62 2.25 0.04 -2.99 16 22 C 0.03 0.34 4.52 -3.83 -0.02 0.33 16 23 C -0.09 -1.96 4.48 -26.73 -0.12 -2.08 16 24 C -0.11 -2.46 5.23 -26.73 -0.14 -2.60 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.48 5.22 -51.93 -0.27 1.21 16 30 H 0.04 0.60 6.48 -51.93 -0.34 0.26 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.55 5.84 -51.93 -0.30 1.25 16 33 H 0.05 0.83 6.81 -51.93 -0.35 0.48 16 34 H 0.34 3.31 9.04 -39.29 -0.36 2.95 16 35 H 0.35 4.08 9.00 -39.29 -0.35 3.72 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.72 6.59 -51.93 -0.34 0.38 16 39 H 0.08 1.08 8.12 -51.93 -0.42 0.65 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.67 5.26 -51.93 -0.27 1.40 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 LS Contribution 315.14 15.07 4.75 4.75 Total: -1.00 -27.70 315.14 -9.48 -37.18 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.03 Total: 6.62 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -1.75 Total: -17.42 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -0.47 Total: -44.10 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.99 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.70 -9.48 -37.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246586487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.904 kcal (2) G-P(sol) polarization free energy of solvation -27.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds