Wall clock time and date at job start Mon Mar 30 2020 01:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46718 * 2 1 4 4 H 1.09002 * 109.47309 * 304.72137 * 3 2 1 5 5 C 1.50701 * 109.46926 * 184.71810 * 3 2 1 6 6 H 1.08001 * 119.99758 * 245.68882 * 5 3 2 7 7 C 1.37876 * 120.00064 * 65.69349 * 5 3 2 8 8 N 1.31518 * 119.99667 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00136 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47329 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47440 * 119.99577 * 9 7 5 12 12 H 1.48495 * 109.47288 * 239.99787 * 9 7 5 13 13 N 1.46900 * 109.47085 * 64.72273 * 3 2 1 14 14 C 1.46897 * 110.99911 * 191.59705 * 13 3 2 15 15 C 1.53000 * 109.47416 * 71.63506 * 14 13 3 16 16 C 1.46894 * 111.00470 * 67.63666 * 13 3 2 17 17 C 1.52997 * 109.47681 * 197.87009 * 16 13 3 18 18 N 1.46896 * 109.47415 * 180.02562 * 17 16 13 19 19 C 1.47015 * 110.99894 * 293.63256 * 18 17 16 20 20 C 1.53096 * 109.25714 * 177.60678 * 19 18 17 21 21 O 1.43017 * 109.25893 * 56.85246 * 20 19 18 22 22 C 1.43019 * 113.73707 * 301.32524 * 21 20 19 23 23 C 1.47021 * 110.99984 * 169.99953 * 18 17 16 24 24 H 1.09009 * 109.46952 * 184.78300 * 1 2 3 25 25 H 1.09000 * 109.47323 * 304.77991 * 1 2 3 26 26 H 1.08997 * 109.47101 * 64.78564 * 1 2 3 27 27 H 1.08995 * 109.47500 * 240.00386 * 2 1 3 28 28 H 1.09002 * 109.46836 * 119.99544 * 2 1 3 29 29 H 0.97001 * 119.99500 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.47152 * 191.63286 * 14 13 3 31 31 H 1.09001 * 109.47186 * 311.63133 * 14 13 3 32 32 H 1.08998 * 109.47077 * 54.38979 * 15 14 13 33 33 H 1.09005 * 109.47007 * 174.38844 * 15 14 13 34 34 H 1.09003 * 109.46895 * 294.38594 * 15 14 13 35 35 H 1.09005 * 109.46921 * 77.87256 * 16 13 3 36 36 H 1.08999 * 109.47536 * 317.87601 * 16 13 3 37 37 H 1.09002 * 109.47124 * 300.00086 * 17 16 13 38 38 H 1.09002 * 109.47411 * 59.99861 * 17 16 13 39 39 H 1.08997 * 109.50630 * 297.54176 * 19 18 17 40 40 H 1.08998 * 109.50341 * 57.67657 * 19 18 17 41 41 H 1.09006 * 109.50879 * 296.91608 * 20 19 18 42 42 H 1.09003 * 109.54208 * 176.80990 * 20 19 18 43 43 H 1.08997 * 109.50899 * 298.74110 * 22 21 20 44 44 H 1.08994 * 109.54149 * 178.62448 * 22 21 20 45 45 H 1.09000 * 109.50596 * 302.32669 * 23 18 17 46 46 H 1.09001 * 109.50560 * 62.41794 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6091 1.9802 -0.8447 5 6 3.5424 1.4442 -0.1169 6 1 4.1472 1.8064 0.7013 7 6 4.1448 0.9835 -1.2683 8 7 3.4082 0.5421 -2.2644 9 14 6.0071 0.9849 -1.4129 10 1 6.6003 1.5266 -0.1639 11 1 6.4880 -0.4035 -1.6280 12 1 6.4138 1.8332 -2.5619 13 7 1.6455 2.1013 1.2524 14 6 1.8715 3.5509 1.1785 15 6 0.8408 4.1807 0.2394 16 6 2.3514 1.5162 2.4001 17 6 1.6213 1.8887 3.6920 18 7 2.3276 1.3041 4.8397 19 6 2.2510 -0.1638 4.8133 20 6 3.0482 -0.7322 5.9903 21 8 2.5417 -0.1855 7.2110 22 6 2.6017 1.2422 7.2709 23 6 1.8000 1.8306 6.1069 24 1 -0.3633 -1.0242 0.0857 25 1 -0.3634 0.5862 0.8441 26 1 -0.3633 0.4378 -0.9297 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 3.8320 0.2184 -3.0747 30 1 1.7703 3.9856 2.1730 31 1 2.8748 3.7433 0.7984 32 1 -0.1625 3.9047 0.5637 33 1 0.9443 5.2656 0.2615 34 1 1.0066 3.8204 -0.7759 35 1 3.3705 1.9015 2.4347 36 1 2.3765 0.4314 2.2967 37 1 1.5964 2.9736 3.7954 38 1 0.6022 1.5036 3.6574 39 1 1.2097 -0.4755 4.8947 40 1 2.6703 -0.5334 3.8775 41 1 4.0994 -0.4656 5.8806 42 1 2.9480 -1.8175 6.0084 43 1 3.6399 1.5662 7.1984 44 1 2.1783 1.5855 8.2148 45 1 1.8900 2.9169 6.1153 46 1 0.7513 1.5514 6.2085 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:30 Heat of formation + Delta-G solvation = -41.529179 kcal Electronic energy + Delta-G solvation = -22509.017045 eV Core-core repulsion = 19433.608230 eV Total energy + Delta-G solvation = -3075.408815 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.51856 -37.68448 -35.56893 -33.03852 -31.47023 -31.22809 -30.42130 -28.43559 -26.50805 -24.96669 -23.99255 -23.10422 -21.72769 -20.85726 -20.20918 -18.76492 -16.53959 -16.26909 -16.01898 -15.26428 -15.08000 -14.97324 -14.79454 -14.27073 -14.02996 -13.55508 -13.49733 -12.86933 -12.82511 -12.27275 -12.13210 -11.83061 -11.64025 -11.46753 -11.38515 -11.30509 -11.07144 -10.87903 -10.68924 -10.59890 -10.58418 -10.36110 -10.14397 -9.77912 -9.64850 -9.62023 -9.35212 -9.01206 -8.35827 -8.23220 -7.11740 -5.99619 -4.10706 3.25760 3.34803 3.38527 3.76826 3.94183 4.40673 4.87433 5.02170 5.06725 5.13303 5.19817 5.26964 5.31601 5.51888 5.56669 5.64557 5.77593 5.78834 5.88548 5.94072 6.01296 6.07620 6.17672 6.27557 6.31312 6.44491 6.51206 6.54303 6.65628 6.78099 6.82555 6.94068 7.04720 7.09285 7.13700 7.17554 7.20747 7.38521 7.60983 7.75256 7.96916 8.16030 8.33498 8.49177 9.00497 9.56801 11.01639 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.016898 B = 0.005529 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.613922 B = 5063.113989 C = 5614.668458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.213 3.787 4 H 0.046 0.954 5 C -0.541 4.541 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.536 5.536 14 C 0.055 3.945 15 C -0.140 4.140 16 C 0.070 3.930 17 C 0.060 3.940 18 N -0.536 5.536 19 C 0.016 3.984 20 C 0.064 3.936 21 O -0.390 6.390 22 C 0.065 3.935 23 C 0.019 3.981 24 H 0.024 0.976 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.031 0.969 29 H 0.260 0.740 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.036 0.964 39 H 0.041 0.959 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.548 1.574 13.241 13.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C 0.106 3.894 4 H 0.064 0.936 5 C -0.580 4.580 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.261 5.261 14 C -0.073 4.073 15 C -0.198 4.198 16 C -0.059 4.059 17 C -0.068 4.068 18 N -0.262 5.262 19 C -0.112 4.112 20 C -0.013 4.013 21 O -0.309 6.309 22 C -0.012 4.012 23 C -0.109 4.109 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.112 0.888 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.101 0.899 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.624 1.446 13.225 13.788 hybrid contribution 1.209 0.064 -0.585 1.344 sum -2.415 1.510 12.640 12.957 Atomic orbital electron populations 1.21720 0.98810 0.98470 1.00650 1.21542 0.92323 0.99430 1.01037 1.19317 0.93027 0.90890 0.86118 0.93582 1.21799 0.92800 1.42383 1.01008 0.92488 1.24910 0.97669 0.95084 0.95761 1.69927 1.34716 1.42392 1.05410 0.86665 0.86465 0.77660 0.77986 1.19913 1.21045 1.21102 1.62384 1.56497 1.02294 1.04875 1.21884 0.98080 0.89719 0.97629 1.21713 0.99247 0.98251 1.00602 1.21793 0.95458 1.00157 0.88461 1.22204 0.95582 0.98948 0.90028 1.62155 1.56232 1.05718 1.02113 1.22822 0.99607 0.88504 1.00275 1.22695 0.97411 0.98104 0.83126 1.87945 1.84641 1.20361 1.37923 1.22636 0.99950 0.80954 0.97704 1.22741 0.97295 1.00429 0.90484 0.95703 0.93124 0.94244 0.90116 0.95010 0.93020 0.93355 0.94078 0.93035 0.93912 0.92343 0.94214 0.90968 0.91363 0.94550 0.94122 0.88806 0.92262 0.88612 0.92387 0.88850 0.89930 0.94268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.85 37.16 0.37 -2.41 16 2 C -0.10 -2.41 5.24 -26.73 -0.14 -2.55 16 3 C 0.21 5.05 1.50 -68.86 -0.10 4.95 16 4 H 0.05 1.22 6.45 -51.93 -0.33 0.89 16 5 C -0.54 -14.13 6.98 -34.44 -0.24 -14.37 16 6 H 0.06 1.52 6.14 -52.49 -0.32 1.20 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.89 -24.67 11.74 55.43 0.65 -24.02 16 9 Si 0.88 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.54 -10.85 3.71 -228.04 -0.84 -11.70 16 14 C 0.06 1.05 5.42 -3.83 -0.02 1.03 16 15 C -0.14 -2.43 9.86 37.16 0.37 -2.07 16 16 C 0.07 1.33 3.91 -3.83 -0.01 1.31 16 17 C 0.06 0.95 5.04 -3.83 -0.02 0.93 16 18 N -0.54 -7.74 4.73 -234.30 -1.11 -8.84 16 19 C 0.02 0.22 5.44 -3.71 -0.02 0.20 16 20 C 0.06 0.78 7.01 37.21 0.26 1.04 16 21 O -0.39 -5.11 10.83 -35.23 -0.38 -5.49 16 22 C 0.06 0.72 7.01 37.21 0.26 0.98 16 23 C 0.02 0.23 5.65 -3.71 -0.02 0.21 16 24 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 25 H 0.05 0.98 7.62 -51.93 -0.40 0.58 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 2.09 6.44 -51.93 -0.33 1.76 16 28 H 0.03 0.71 6.18 -51.93 -0.32 0.39 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.05 0.81 6.42 -51.93 -0.33 0.48 16 31 H 0.04 0.87 7.17 -51.93 -0.37 0.50 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 1.13 6.78 -51.93 -0.35 0.78 16 35 H 0.04 0.84 6.68 -51.93 -0.35 0.49 16 36 H 0.07 1.45 4.31 -51.93 -0.22 1.23 16 37 H 0.07 1.05 6.55 -51.93 -0.34 0.71 16 38 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 1.38 6.38 -51.93 -0.33 1.04 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 46 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -27.56 343.12 -9.17 -36.73 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.21 Total: 1.17 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 0.58 Total: -9.02 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -1.30 Total: -44.56 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.38 Total: -5.49 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.56 -9.17 -36.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.804 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds