Wall clock time and date at job start Mon Mar 30 2020 00:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42908 * 113.99402 * 2 1 4 4 C 1.52996 * 109.46727 * 180.02562 * 3 2 1 5 5 C 1.50705 * 109.47377 * 180.02562 * 4 3 2 6 6 O 1.21287 * 119.99246 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00359 * 179.97438 * 5 4 3 8 8 C 1.46503 * 120.00197 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47215 * 180.02562 * 8 7 5 10 10 H 1.09003 * 109.58460 * 60.41559 * 9 8 7 11 11 C 1.53193 * 109.58685 * 180.84067 * 9 8 7 12 12 C 1.53039 * 109.31618 * 174.42319 * 11 9 8 13 13 C 1.53038 * 109.53604 * 298.63790 * 12 11 9 14 14 C 1.52763 * 109.38623 * 61.23579 * 13 12 11 15 15 N 1.46921 * 109.00939 * 305.58939 * 14 13 12 16 16 C 1.36935 * 120.63002 * 233.58304 * 15 14 13 17 17 H 1.08006 * 120.00079 * 146.42253 * 16 15 14 18 18 C 1.38808 * 120.00155 * 326.42065 * 16 15 14 19 19 N 1.31615 * 120.00312 * 338.38225 * 18 16 15 20 20 Si 1.86809 * 119.99988 * 158.37721 * 18 16 15 21 21 H 1.48496 * 109.46808 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47171 * 300.00212 * 20 18 16 23 23 H 1.48504 * 109.46836 * 60.00418 * 20 18 16 24 24 H 1.09002 * 109.46699 * 299.99455 * 1 2 3 25 25 H 1.08998 * 109.47143 * 60.00079 * 1 2 3 26 26 H 1.09005 * 109.46546 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46967 * 60.00328 * 3 2 1 28 28 H 1.08996 * 109.47179 * 299.99897 * 3 2 1 29 29 H 1.09001 * 109.47262 * 60.00346 * 4 3 2 30 30 H 1.09006 * 109.47426 * 300.00217 * 4 3 2 31 31 H 0.97001 * 120.00031 * 0.02562 * 7 5 4 32 32 H 1.09001 * 109.46602 * 60.00244 * 8 7 5 33 33 H 1.09006 * 109.47222 * 300.00644 * 8 7 5 34 34 H 1.09005 * 109.49548 * 294.37980 * 11 9 8 35 35 H 1.09002 * 109.49763 * 54.43484 * 11 9 8 36 36 H 1.08998 * 109.45517 * 58.65174 * 12 11 9 37 37 H 1.08996 * 109.45858 * 178.62748 * 12 11 9 38 38 H 1.09003 * 109.49630 * 181.31588 * 13 12 11 39 39 H 1.09002 * 109.49374 * 301.40882 * 13 12 11 40 40 H 1.09003 * 109.50882 * 185.70613 * 14 13 12 41 41 H 1.08998 * 109.43007 * 65.42944 * 14 13 12 42 42 H 0.97004 * 119.99412 * 354.45889 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.1483 2.5616 0.0000 6 8 3.4353 3.5427 0.0013 7 7 5.4886 2.7025 0.0001 8 6 6.0845 4.0409 0.0002 9 6 7.6097 3.9202 -0.0004 10 1 7.9336 3.3861 -0.8937 11 6 8.2355 5.3183 0.0209 12 6 9.7542 5.1910 0.1606 13 6 10.0899 4.4914 1.4797 14 6 9.4848 3.0887 1.4780 15 7 8.0463 3.1884 1.1966 16 6 7.1296 2.6151 2.0369 17 1 6.1671 3.0819 2.1854 18 6 7.4374 1.4339 2.6978 19 7 8.3815 0.6450 2.2304 20 14 6.5116 0.9640 4.2508 21 1 7.0258 -0.3325 4.7604 22 1 6.7095 2.0141 5.2819 23 1 5.0640 0.8372 3.9448 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8465 -0.8900 29 1 3.8567 0.6442 -0.8909 30 1 3.8574 0.6437 0.8891 31 1 6.0588 1.9178 -0.0006 32 1 5.7628 4.5817 0.8902 33 1 5.7628 4.5819 -0.8898 34 1 7.9978 5.8374 -0.9077 35 1 7.8380 5.8820 0.8648 36 1 10.1476 4.6062 -0.6709 37 1 10.2042 6.1837 0.1514 38 1 11.1722 4.4220 1.5895 39 1 9.6754 5.0628 2.3102 40 1 9.6351 2.6263 2.4536 41 1 9.9671 2.4867 0.7079 42 1 8.8066 0.8472 1.3822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265636559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:06 Heat of formation + Delta-G solvation = -95.273201 kcal Electronic energy + Delta-G solvation = -21928.257519 eV Core-core repulsion = 18714.685094 eV Total energy + Delta-G solvation = -3213.572425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.91154 -39.56684 -38.67013 -35.77244 -35.14677 -33.13504 -32.04848 -31.51826 -28.00833 -27.29011 -26.38955 -24.31095 -23.73159 -22.39878 -21.25464 -20.69763 -19.13689 -18.15944 -17.46333 -17.02103 -16.94527 -16.66133 -15.93930 -15.70943 -15.67521 -15.47924 -15.05770 -14.97163 -14.46505 -14.16443 -13.89277 -13.72174 -13.26182 -13.09412 -12.88217 -12.71308 -12.55944 -12.38942 -12.14645 -11.97426 -11.96691 -11.72672 -11.63567 -11.29276 -11.07111 -10.79291 -10.68650 -10.44429 -9.86635 -8.79809 -8.07655 -5.35630 1.57596 1.60693 1.67401 1.79813 2.17213 2.63401 3.02940 3.29544 3.49173 3.80172 3.92503 4.01261 4.08943 4.13950 4.19672 4.32031 4.44010 4.48949 4.51638 4.54089 4.54641 4.68801 4.73045 4.78743 4.82920 4.83396 4.90105 5.02230 5.09494 5.15811 5.28395 5.30626 5.35205 5.57059 5.64136 6.02773 6.14684 6.50289 6.68264 7.12980 7.29366 7.83650 8.31576 9.12071 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.006086 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.348178 B = 4599.984868 C = 5794.434522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.087 3.913 4 C -0.135 4.135 5 C 0.512 3.488 6 O -0.596 6.596 7 N -0.691 5.691 8 C 0.142 3.858 9 C 0.160 3.840 10 H 0.034 0.966 11 C -0.122 4.122 12 C -0.102 4.102 13 C -0.131 4.131 14 C 0.158 3.842 15 N -0.609 5.609 16 C -0.327 4.327 17 H 0.046 0.954 18 C -0.058 4.058 19 N -0.941 5.941 20 Si 1.091 2.909 21 H -0.293 1.293 22 H -0.291 1.291 23 H -0.280 1.280 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.104 0.896 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.410 0.590 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.008 0.992 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.922 3.537 -6.521 9.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.010 3.990 4 C -0.175 4.175 5 C 0.299 3.701 6 O -0.479 6.479 7 N -0.340 5.340 8 C 0.018 3.982 9 C 0.054 3.946 10 H 0.051 0.949 11 C -0.162 4.162 12 C -0.140 4.140 13 C -0.170 4.170 14 C 0.033 3.967 15 N -0.335 5.335 16 C -0.457 4.457 17 H 0.064 0.936 18 C -0.257 4.257 19 N -0.582 5.582 20 Si 0.919 3.081 21 H -0.219 1.219 22 H -0.218 1.218 23 H -0.206 1.206 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.122 0.878 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.134 0.866 30 H 0.115 0.885 31 H 0.247 0.753 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.026 0.974 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.399 2.938 -5.295 8.810 hybrid contribution 0.324 0.833 -0.813 1.208 sum -6.075 3.770 -6.108 9.404 Atomic orbital electron populations 1.22966 0.79093 1.04111 1.00894 1.87794 1.21879 1.27915 1.95641 1.22019 0.91714 0.84133 1.01157 1.21416 0.95467 0.94254 1.06335 1.20655 0.82496 0.91332 0.75585 1.90614 1.61840 1.41977 1.53444 1.45991 1.06092 1.10174 1.71740 1.21202 0.92789 0.84039 1.00200 1.20895 0.91324 0.93100 0.89252 0.94888 1.21890 0.96278 0.96154 1.01856 1.21345 0.95322 1.00567 0.96745 1.21897 0.99811 0.97152 0.98176 1.20705 0.84012 0.94426 0.97597 1.44310 1.01639 1.63001 1.24530 1.19885 0.98681 1.04110 1.23022 0.93604 1.26587 1.00980 0.92230 1.05872 1.70877 1.28830 1.37177 1.21358 0.83137 0.75172 0.75405 0.74434 1.21929 1.21801 1.20582 0.93551 0.92925 0.87787 0.93488 0.92197 0.86552 0.88487 0.75282 0.94062 0.90931 0.89867 0.93025 0.92170 0.90460 0.91283 0.93562 0.94468 0.97352 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.74 16 2 O -0.41 -11.58 10.70 -148.98 -1.59 -13.17 16 3 C 0.09 2.56 5.23 71.98 0.38 2.93 16 4 C -0.13 -4.25 6.07 29.85 0.18 -4.07 16 5 C 0.51 19.18 7.83 87.66 0.69 19.87 16 6 O -0.60 -25.20 15.98 -3.05 -0.05 -25.25 16 7 N -0.69 -26.41 3.87 -463.05 -1.79 -28.20 16 8 C 0.14 5.30 4.44 86.38 0.38 5.68 16 9 C 0.16 5.91 3.02 44.97 0.14 6.05 16 10 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 11 C -0.12 -3.74 5.37 30.67 0.16 -3.58 16 12 C -0.10 -2.93 5.89 30.62 0.18 -2.75 16 13 C -0.13 -4.52 6.06 30.53 0.19 -4.33 16 14 C 0.16 6.89 4.68 86.22 0.40 7.30 16 15 N -0.61 -27.29 2.77 -676.06 -1.88 -29.16 16 16 C -0.33 -16.38 6.75 84.03 0.57 -15.81 16 17 H 0.05 2.42 6.03 -2.91 -0.02 2.40 16 18 C -0.06 -3.06 4.74 84.86 0.40 -2.66 16 19 N -0.94 -52.98 12.60 21.65 0.27 -52.71 16 20 Si 1.09 49.87 29.97 68.60 2.06 51.92 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 28 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 29 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 30 H 0.10 3.22 8.14 -2.38 -0.02 3.20 16 31 H 0.41 16.49 7.36 -92.71 -0.68 15.80 16 32 H 0.04 1.74 7.43 -2.39 -0.02 1.72 16 33 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.04 1.87 6.64 -2.39 -0.02 1.86 16 41 H 0.01 0.38 7.80 -2.39 -0.02 0.36 16 42 H 0.26 14.70 6.66 -92.71 -0.62 14.08 16 Total: -1.00 -61.83 332.28 2.39 -59.44 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.46 Total: 26.76 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 4.91 Total: 10.37 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -3.39 Total: -110.07 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -1.64 Total: -38.42 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.06 Total: 51.92 kcal Total: -61.83 2.39 -59.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265636559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.835 kcal (2) G-P(sol) polarization free energy of solvation -61.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds