Wall clock time and date at job start Mon Mar 30 2020 00:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47180 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99836 * 359.97438 * 5 4 3 7 7 N 1.34773 * 120.00134 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00221 * 179.97438 * 7 5 4 9 9 H 1.09010 * 109.47030 * 34.99788 * 8 7 5 10 10 C 1.52999 * 109.46966 * 275.00442 * 8 7 5 11 11 C 1.53003 * 109.47111 * 299.99373 * 10 8 7 12 12 C 1.53000 * 109.46967 * 300.00568 * 11 10 8 13 13 C 1.52991 * 109.47469 * 59.99813 * 12 11 10 14 14 H 1.09000 * 109.47312 * 59.99979 * 13 12 11 15 15 N 1.46497 * 109.47349 * 179.97438 * 13 12 11 16 16 C 1.36936 * 120.00289 * 275.00002 * 15 13 12 17 17 H 1.07997 * 119.99755 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99994 * 179.97438 * 16 15 13 19 19 N 1.31615 * 119.99872 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99918 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47340 * 89.99708 * 20 18 16 22 22 H 1.48497 * 109.47186 * 210.00405 * 20 18 16 23 23 H 1.48508 * 109.47157 * 329.99917 * 20 18 16 24 24 C 1.52993 * 109.47409 * 154.99975 * 8 7 5 25 25 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 27 27 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 28 28 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 29 29 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 30 30 H 1.09004 * 109.46775 * 299.99875 * 4 3 2 31 31 H 1.09003 * 109.47385 * 59.99763 * 4 3 2 32 32 H 0.96999 * 120.00029 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.47619 * 59.99643 * 10 8 7 34 34 H 1.09001 * 109.46701 * 179.97438 * 10 8 7 35 35 H 1.08994 * 109.47362 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.46935 * 60.00051 * 11 10 8 37 37 H 1.09000 * 109.46871 * 299.99522 * 12 11 10 38 38 H 1.08998 * 109.46639 * 180.02562 * 12 11 10 39 39 H 0.97001 * 119.99847 * 94.99719 * 15 13 12 40 40 H 0.97001 * 119.99941 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.47380 * 180.02562 * 24 8 7 42 42 H 1.09002 * 109.47447 * 299.99980 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1485 2.5613 0.0000 6 8 3.4357 3.5425 0.0004 7 7 5.4889 2.7021 0.0001 8 6 6.0848 4.0404 0.0002 9 1 5.4635 4.7148 0.5896 10 6 6.1775 4.5574 -1.4368 11 6 7.0496 3.6109 -2.2642 12 6 8.4513 3.5450 -1.6544 13 6 8.3586 3.0280 -0.2175 14 1 7.9153 2.0322 -0.2175 15 7 9.7008 2.9644 0.3661 16 6 10.4858 1.8616 0.1593 17 1 10.1153 1.0386 -0.4338 18 6 11.7578 1.8016 0.7119 19 7 12.2095 2.8048 1.4343 20 14 12.8290 0.2976 0.4291 21 1 13.6416 0.4923 -0.7985 22 1 13.7299 0.1054 1.5938 23 1 11.9669 -0.9007 0.2671 24 6 7.4865 3.9745 0.6099 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.8574 0.6435 0.8892 31 1 3.8568 0.6437 -0.8908 32 1 6.0590 1.9174 -0.0006 33 1 5.1788 4.6044 -1.8713 34 1 6.6205 5.5533 -1.4367 35 1 7.1160 3.9794 -3.2878 36 1 6.6062 2.6151 -2.2642 37 1 8.8946 4.5408 -1.6544 38 1 9.0726 2.8711 -2.2441 39 1 10.0334 3.7034 0.8991 40 1 13.0982 2.7627 1.8207 41 1 7.9297 4.9703 0.6103 42 1 7.4205 3.6062 1.6336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267073835.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:27 Heat of formation + Delta-G solvation = -113.502264 kcal Electronic energy + Delta-G solvation = -21145.417223 eV Core-core repulsion = 17931.054326 eV Total energy + Delta-G solvation = -3214.362897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28035 -39.45297 -38.57428 -36.13227 -34.44313 -33.06566 -32.67641 -30.73033 -29.47659 -27.46910 -25.69332 -24.80325 -23.27208 -22.49684 -21.68787 -20.09885 -19.15027 -18.44554 -17.32493 -17.05516 -16.80452 -16.57851 -16.25321 -15.88374 -15.69759 -15.27889 -15.08422 -14.84186 -14.54643 -14.09383 -13.76153 -13.47195 -13.15969 -13.02017 -12.89519 -12.77466 -12.71649 -12.37550 -12.21790 -12.12483 -12.03706 -11.93748 -11.58297 -11.44665 -10.98869 -10.91696 -10.82354 -10.65939 -10.00163 -8.97051 -7.91372 -5.19111 1.49616 1.50346 1.58511 1.63917 2.06842 2.58345 3.00135 3.42345 3.66255 3.79144 3.89842 3.94382 4.06384 4.16851 4.31825 4.33728 4.37772 4.52456 4.53287 4.54335 4.58090 4.68680 4.73761 4.82520 4.83098 4.86277 4.86660 4.99311 5.12219 5.19776 5.24929 5.38811 5.52434 5.52966 5.57614 5.68401 6.16285 6.31100 6.56392 7.23712 7.37255 8.14336 8.36074 9.32269 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021506 B = 0.003845 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.673023 B = 7280.648827 C = 8055.867145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.080 3.920 4 C -0.137 4.137 5 C 0.520 3.480 6 O -0.583 6.583 7 N -0.712 5.712 8 C 0.158 3.842 9 H 0.081 0.919 10 C -0.121 4.121 11 C -0.104 4.104 12 C -0.128 4.128 13 C 0.177 3.823 14 H 0.049 0.951 15 N -0.738 5.738 16 C -0.233 4.233 17 H 0.078 0.922 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.968 3.032 21 H -0.291 1.291 22 H -0.299 1.299 23 H -0.267 1.267 24 C -0.121 4.121 25 H 0.101 0.899 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.410 0.590 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.371 0.629 40 H 0.249 0.751 41 H 0.075 0.925 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.552 -2.375 -5.004 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.003 3.997 4 C -0.176 4.176 5 C 0.308 3.692 6 O -0.464 6.464 7 N -0.364 5.364 8 C 0.053 3.947 9 H 0.099 0.901 10 C -0.160 4.160 11 C -0.143 4.143 12 C -0.168 4.168 13 C 0.069 3.931 14 H 0.067 0.933 15 N -0.377 5.377 16 C -0.365 4.365 17 H 0.096 0.904 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.798 3.202 21 H -0.218 1.218 22 H -0.226 1.226 23 H -0.192 1.192 24 C -0.160 4.160 25 H 0.120 0.880 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.247 0.753 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.203 0.797 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.886 -2.035 -5.047 21.584 hybrid contribution 1.307 -0.351 0.229 1.372 sum -19.580 -2.387 -4.818 20.304 Atomic orbital electron populations 1.22938 0.79283 1.03990 1.00805 1.87781 1.21624 1.28049 1.95638 1.22087 0.92361 0.84105 1.01145 1.21474 0.94903 0.93973 1.07263 1.20730 0.82272 0.91461 0.74741 1.90675 1.61738 1.42088 1.51853 1.46154 1.06447 1.09757 1.74014 1.20807 0.92828 0.84164 0.96870 0.90072 1.21846 0.99891 0.99659 0.94579 1.21411 0.94196 0.99863 0.98795 1.22113 0.96536 1.00373 0.97818 1.20381 0.84644 0.96678 0.91445 0.93344 1.42651 1.13692 1.19978 1.61383 1.19614 0.95645 0.96375 1.24821 0.90424 1.25509 0.99379 1.00739 1.01364 1.69812 1.18554 1.33328 1.40537 0.85214 0.78794 0.79850 0.76382 1.21819 1.22630 1.19165 1.21962 0.93839 1.00980 0.99196 0.88014 0.93306 0.93406 0.92909 0.93115 0.86643 0.86335 0.75282 0.91847 0.90551 0.91469 0.91753 0.93529 0.94022 0.79713 0.94229 0.90635 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.13 10.70 -148.98 -1.59 -9.73 16 3 C 0.08 1.58 5.23 71.98 0.38 1.95 16 4 C -0.14 -2.47 6.07 29.85 0.18 -2.29 16 5 C 0.52 12.33 7.79 87.66 0.68 13.01 16 6 O -0.58 -17.72 15.64 -3.03 -0.05 -17.76 16 7 N -0.71 -16.37 4.23 -442.55 -1.87 -18.24 16 8 C 0.16 4.03 2.78 44.99 0.13 4.16 16 9 H 0.08 2.18 7.58 -2.38 -0.02 2.16 16 10 C -0.12 -2.92 5.60 30.59 0.17 -2.75 16 11 C -0.10 -2.61 5.77 30.60 0.18 -2.43 16 12 C -0.13 -4.18 5.50 30.59 0.17 -4.01 16 13 C 0.18 6.25 2.60 44.99 0.12 6.37 16 14 H 0.05 1.66 6.44 -2.39 -0.02 1.65 16 15 N -0.74 -35.20 5.12 -322.95 -1.65 -36.85 16 16 C -0.23 -12.35 9.93 84.03 0.83 -11.52 16 17 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 18 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 19 N -0.97 -58.61 13.06 21.65 0.28 -58.32 16 20 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 C -0.12 -3.61 5.08 30.59 0.16 -3.46 16 25 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 29 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 30 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.41 8.69 6.87 -92.71 -0.64 8.06 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.52 7.60 -2.39 -0.02 1.50 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.37 19.35 7.80 -92.71 -0.72 18.63 16 40 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -66.03 338.82 1.49 -64.54 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -0.36 Total: 32.40 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 4.70 Total: -3.26 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -3.24 Total: -113.42 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -1.64 Total: -27.49 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -66.03 1.49 -64.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267073835.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.966 kcal (2) G-P(sol) polarization free energy of solvation -66.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds