Wall clock time and date at job start Mon Mar 30 2020 00:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 114.00012 * 2 1 4 4 C 1.53002 * 109.47054 * 180.02562 * 3 2 1 5 5 C 1.50693 * 109.46821 * 180.02562 * 4 3 2 6 6 O 1.21276 * 120.00611 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99776 * 179.97438 * 5 4 3 8 8 C 1.46935 * 120.63031 * 354.03516 * 7 5 4 9 9 C 1.52763 * 109.00526 * 233.58443 * 8 7 5 10 10 C 1.53043 * 109.38567 * 305.58605 * 9 8 7 11 11 C 1.53038 * 109.53358 * 61.24192 * 10 9 8 12 12 C 1.46927 * 120.63303 * 174.31473 * 7 5 4 13 13 H 1.09001 * 109.58934 * 246.29897 * 12 7 5 14 14 C 1.52997 * 109.58508 * 6.58169 * 12 7 5 15 15 N 1.46503 * 109.47250 * 292.91564 * 14 12 7 16 16 C 1.36932 * 120.00252 * 185.81907 * 15 14 12 17 17 H 1.08004 * 119.99702 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00433 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00272 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99746 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47148 * 89.99312 * 20 18 16 22 22 H 1.48494 * 109.47334 * 210.00010 * 20 18 16 23 23 H 1.48508 * 109.46969 * 329.99639 * 20 18 16 24 24 H 1.08996 * 109.46965 * 59.99773 * 1 2 3 25 25 H 1.08996 * 109.47096 * 299.99708 * 1 2 3 26 26 H 1.09003 * 109.46855 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47095 * 300.00325 * 3 2 1 28 28 H 1.09002 * 109.46907 * 60.00382 * 3 2 1 29 29 H 1.09001 * 109.46778 * 300.00439 * 4 3 2 30 30 H 1.08999 * 109.47303 * 59.99781 * 4 3 2 31 31 H 1.08997 * 109.58309 * 353.41797 * 8 7 5 32 32 H 1.08998 * 109.58445 * 113.84592 * 8 7 5 33 33 H 1.08998 * 109.55897 * 185.55403 * 9 8 7 34 34 H 1.08996 * 109.38675 * 65.51398 * 9 8 7 35 35 H 1.09001 * 109.45824 * 301.22509 * 10 9 8 36 36 H 1.08995 * 109.44975 * 181.25627 * 10 9 8 37 37 H 1.09005 * 109.49384 * 178.68664 * 11 10 9 38 38 H 1.08999 * 109.52484 * 58.60916 * 11 10 9 39 39 H 1.09001 * 109.47062 * 52.91655 * 14 12 7 40 40 H 1.09004 * 109.47568 * 172.91378 * 14 12 7 41 41 H 0.97000 * 119.99992 * 5.82345 * 15 14 12 42 42 H 0.97005 * 119.99809 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1484 2.5613 0.0000 6 8 3.4356 3.5425 0.0004 7 7 5.4888 2.7022 0.0001 8 6 6.3647 1.5298 0.1310 9 6 7.3370 1.7617 1.2863 10 6 8.0808 3.0812 1.0671 11 6 7.0769 4.2360 1.0392 12 6 6.1018 4.0316 -0.1245 13 1 6.6392 4.0991 -1.0705 14 6 5.0128 5.1052 -0.0757 15 7 4.1715 5.0021 -1.2706 16 6 3.1998 5.9376 -1.5066 17 1 3.0540 6.7518 -0.8121 18 6 2.4030 5.8403 -2.6391 19 7 1.4687 6.7393 -2.8657 20 14 2.6556 4.4325 -3.8406 21 1 1.8017 3.2841 -3.4442 22 1 2.2847 4.8764 -5.2083 23 1 4.0816 4.0179 -3.8246 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 3.8574 0.6435 0.8891 30 1 3.8568 0.6439 -0.8908 31 1 5.7623 0.6445 0.3343 32 1 6.9261 1.3882 -0.7925 33 1 8.0546 0.9424 1.3293 34 1 6.7814 1.8085 2.2228 35 1 8.6166 3.0427 0.1187 36 1 8.7908 3.2368 1.8793 37 1 7.6095 5.1778 0.9064 38 1 6.5234 4.2602 1.9778 39 1 4.3998 4.9607 0.8139 40 1 5.4760 6.0914 -0.0414 41 1 4.3026 4.2711 -1.8945 42 1 0.9116 6.6710 -3.6569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272916618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:37 Heat of formation + Delta-G solvation = -56.978297 kcal Electronic energy + Delta-G solvation = -22487.857260 eV Core-core repulsion = 19275.945427 eV Total energy + Delta-G solvation = -3211.911834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.58622 -39.01418 -38.12855 -36.59266 -34.17377 -33.70353 -32.37102 -31.82418 -28.04475 -27.44838 -25.86112 -24.72719 -24.02674 -22.60905 -21.50686 -20.14074 -19.47442 -18.06012 -17.33862 -16.98105 -16.79349 -16.65477 -16.06897 -15.83497 -15.71545 -15.34025 -14.93321 -14.69056 -14.56595 -14.19768 -14.02293 -13.76381 -13.60687 -13.37752 -12.95201 -12.86643 -12.64424 -12.41507 -12.22824 -12.19599 -11.99654 -11.85845 -11.73676 -11.45644 -11.35088 -10.95519 -10.75552 -9.94474 -9.55854 -8.87039 -7.97134 -5.18890 1.26027 1.32559 1.38520 1.87091 1.98098 2.48987 2.82331 3.35216 3.60975 3.71947 3.84232 3.96880 4.00555 4.13633 4.16180 4.30469 4.34811 4.38526 4.43509 4.47442 4.52859 4.63701 4.73389 4.76787 4.79285 4.81862 4.86887 4.99188 5.04994 5.14715 5.17462 5.26547 5.33040 5.53770 5.76751 5.82165 6.04772 6.26034 6.60319 7.14731 7.47878 7.93936 8.12466 9.26563 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.009210 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.182017 B = 3039.286805 C = 4812.749240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.080 3.920 4 C -0.123 4.123 5 C 0.467 3.533 6 O -0.511 6.511 7 N -0.614 5.614 8 C 0.101 3.899 9 C -0.129 4.129 10 C -0.113 4.113 11 C -0.120 4.120 12 C 0.143 3.857 13 H 0.070 0.930 14 C 0.167 3.833 15 N -0.719 5.719 16 C -0.194 4.194 17 H 0.047 0.953 18 C -0.075 4.075 19 N -0.994 5.994 20 Si 0.954 3.046 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.260 1.260 24 H 0.033 0.967 25 H 0.047 0.953 26 H 0.114 0.886 27 H 0.024 0.976 28 H 0.047 0.953 29 H 0.125 0.875 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.025 0.975 40 H 0.019 0.981 41 H 0.357 0.643 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.406 -18.345 9.293 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C 0.003 3.997 4 C -0.163 4.163 5 C 0.254 3.746 6 O -0.384 6.384 7 N -0.351 5.351 8 C -0.021 4.021 9 C -0.167 4.167 10 C -0.151 4.151 11 C -0.159 4.159 12 C 0.040 3.960 13 H 0.088 0.912 14 C 0.041 3.959 15 N -0.363 5.363 16 C -0.326 4.326 17 H 0.065 0.935 18 C -0.264 4.264 19 N -0.647 5.647 20 Si 0.783 3.217 21 H -0.215 1.215 22 H -0.221 1.221 23 H -0.185 1.185 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.133 0.867 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.143 0.857 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.036 0.964 41 H 0.190 0.810 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.025 -17.801 9.355 23.959 hybrid contribution -0.910 0.142 -0.965 1.334 sum 12.115 -17.659 8.390 23.000 Atomic orbital electron populations 1.22945 0.79561 1.04250 1.00312 1.87718 1.21370 1.27459 1.95567 1.22042 0.93768 0.83942 0.99976 1.21436 0.93405 0.94859 1.06609 1.20945 0.83093 0.91607 0.78987 1.91190 1.61868 1.39466 1.45863 1.48066 1.04930 1.07995 1.74157 1.21940 0.93018 0.87240 0.99863 1.21837 0.98435 0.98652 0.97797 1.21499 0.97062 0.93452 1.03073 1.21853 0.96721 1.00512 0.96802 1.21419 0.93398 0.81815 0.99407 0.91194 1.20874 0.90039 0.94973 0.90011 1.42530 1.39489 1.29451 1.24789 1.18970 1.07806 1.02207 1.03611 0.93532 1.25309 0.98789 1.01353 1.00996 1.69887 1.25753 1.39162 1.29947 0.85402 0.78174 0.79727 0.78401 1.21504 1.22134 1.18495 0.94831 0.93434 0.86746 0.95747 0.93453 0.85671 0.87354 0.88018 0.90497 0.88023 0.92056 0.91105 0.89999 0.90136 0.92253 0.95766 0.96356 0.81010 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.40 -11.64 10.70 -148.98 -1.59 -13.24 16 3 C 0.08 2.62 5.23 71.98 0.38 3.00 16 4 C -0.12 -3.31 4.49 29.85 0.13 -3.17 16 5 C 0.47 15.99 6.96 87.65 0.61 16.61 16 6 O -0.51 -23.62 9.64 -3.02 -0.03 -23.65 16 7 N -0.61 -16.93 2.98 -795.85 -2.37 -19.31 16 8 C 0.10 1.68 6.30 86.22 0.54 2.22 16 9 C -0.13 -1.68 6.06 30.53 0.19 -1.49 16 10 C -0.11 -1.67 5.89 30.62 0.18 -1.49 16 11 C -0.12 -2.64 5.37 30.67 0.16 -2.48 16 12 C 0.14 4.33 2.95 44.97 0.13 4.46 16 13 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 14 C 0.17 7.12 4.87 86.38 0.42 7.54 16 15 N -0.72 -37.38 2.96 -343.44 -1.01 -38.39 16 16 C -0.19 -12.23 10.17 84.03 0.85 -11.38 16 17 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 18 C -0.07 -4.83 5.50 84.86 0.47 -4.36 16 19 N -0.99 -68.67 13.97 21.65 0.30 -68.36 16 20 Si 0.95 50.55 27.74 68.60 1.90 52.45 16 21 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 22 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 23 H -0.26 -12.55 6.52 99.48 0.65 -11.91 16 24 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.02 0.97 8.10 -2.39 -0.02 0.95 16 28 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 29 H 0.13 2.51 7.44 -2.39 -0.02 2.49 16 30 H 0.11 2.55 8.13 -2.39 -0.02 2.53 16 31 H 0.10 1.33 5.96 -2.39 -0.01 1.31 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.02 1.15 6.50 -2.39 -0.02 1.14 16 40 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.36 18.12 4.68 -92.71 -0.43 17.69 16 42 H 0.25 16.63 8.31 -92.70 -0.77 15.86 16 Total: -1.00 -82.09 326.50 3.01 -79.08 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.50 Total: 20.10 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 5.32 Total: 11.32 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -3.08 Total: -126.06 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -1.62 Total: -36.88 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 1.90 Total: 52.45 kcal Total: -82.09 3.01 -79.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272916618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.100 kcal (2) G-P(sol) polarization free energy of solvation -82.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds