Wall clock time and date at job start Mon Mar 30 2020 00:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42911 * 113.99672 * 2 1 4 4 C 1.52995 * 109.46930 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47244 * 65.00020 * 4 3 2 6 6 C 1.42909 * 113.99835 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46752 * 80.00286 * 6 5 4 8 8 C 1.47683 * 110.99837 * 250.56679 * 7 6 5 9 9 C 1.53702 * 88.23413 * 222.38951 * 8 7 6 10 10 C 1.46422 * 110.99618 * 154.99943 * 7 6 5 11 11 C 1.52541 * 121.84935 * 265.40190 * 10 7 6 12 12 N 1.47672 * 87.65417 * 99.08116 * 11 10 7 13 13 C 1.46895 * 110.99864 * 137.94115 * 12 11 10 14 14 C 1.50702 * 109.46770 * 170.00169 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72214 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.47676 * 88.10176 * 26.14351 * 12 11 10 23 23 H 1.09007 * 109.46462 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47485 * 299.99252 * 1 2 3 25 25 H 1.08995 * 109.47203 * 60.00177 * 1 2 3 26 26 H 1.08994 * 109.46757 * 59.99962 * 3 2 1 27 27 H 1.08997 * 109.46616 * 300.00217 * 3 2 1 28 28 H 1.09005 * 109.47566 * 304.99961 * 4 3 2 29 29 H 1.09001 * 109.46802 * 185.00232 * 4 3 2 30 30 H 1.08993 * 109.47060 * 320.00077 * 6 5 4 31 31 H 1.09002 * 109.46706 * 200.00144 * 6 5 4 32 32 H 1.09003 * 113.43200 * 337.23253 * 8 7 6 33 33 H 1.09000 * 113.43037 * 107.49309 * 8 7 6 34 34 H 1.08999 * 114.22270 * 271.54700 * 9 8 7 35 35 H 1.09000 * 114.22713 * 138.65691 * 9 8 7 36 36 H 1.09000 * 113.52851 * 344.38465 * 11 10 7 37 37 H 1.08997 * 113.52247 * 213.77664 * 11 10 7 38 38 H 1.09004 * 109.47258 * 50.00493 * 13 12 11 39 39 H 1.08994 * 109.47601 * 290.00085 * 13 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 41 41 H 1.09000 * 113.51799 * 88.55081 * 22 12 11 42 42 H 1.09003 * 113.51984 * 219.15998 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 8 3.9648 0.5798 -1.2220 6 6 5.3812 0.4204 -1.3250 7 7 5.7967 -0.7671 -0.5667 8 6 6.5425 -0.3844 0.6492 9 6 7.5291 -1.5229 0.3448 10 6 7.0526 -1.3098 -1.0883 11 6 7.0772 -2.4353 -2.1177 12 7 7.2871 -1.4026 -3.1522 13 6 8.2935 -1.8351 -4.1310 14 6 8.3051 -0.8785 -5.2954 15 1 7.6325 -0.0335 -5.3070 16 6 9.1788 -1.0785 -6.3432 17 7 9.9981 -2.1071 -6.3290 18 14 9.1986 0.1116 -7.7829 19 1 10.1673 1.2034 -7.5094 20 1 9.6018 -0.6104 -9.0163 21 1 7.8425 0.6878 -7.9675 22 6 7.8947 -0.5515 -2.1094 23 1 -0.3632 -1.0278 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6885 1.8464 0.8899 27 1 1.6884 1.8464 -0.8900 28 1 3.8515 0.5684 0.8409 29 1 3.9783 2.1767 0.0890 30 1 5.8765 1.3024 -0.9192 31 1 5.6577 0.2979 -2.3722 32 1 6.9922 0.6067 0.5878 33 1 5.9775 -0.5338 1.5692 34 1 7.2469 -2.4853 0.7716 35 1 8.5750 -1.2650 0.5113 36 1 6.1259 -2.9590 -2.2126 37 1 7.9230 -3.1128 -2.0013 38 1 8.0486 -2.8363 -4.4857 39 1 9.2766 -1.8467 -3.6605 40 1 10.6125 -2.2480 -7.0663 41 1 8.9669 -0.7075 -1.9908 42 1 7.6277 0.5017 -2.1974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277938697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:08 Heat of formation + Delta-G solvation = -1.619392 kcal Electronic energy + Delta-G solvation = -21307.379464 eV Core-core repulsion = 18097.868172 eV Total energy + Delta-G solvation = -3209.511291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20816 -38.35620 -37.27883 -36.28386 -32.75057 -30.80524 -29.08431 -28.71560 -26.38274 -25.59761 -25.08594 -23.56294 -22.66161 -22.24872 -20.41186 -18.05917 -17.04400 -16.76213 -16.46223 -16.01420 -15.98968 -15.58039 -15.18343 -14.83130 -14.47199 -13.92421 -13.70799 -13.46836 -13.04854 -12.89347 -12.56975 -12.13856 -12.05214 -11.76486 -11.68280 -11.28598 -11.21983 -11.07760 -11.01048 -10.73208 -10.48994 -10.36464 -10.16260 -9.81217 -9.68833 -9.51297 -9.21596 -8.60856 -8.42491 -7.85200 -6.03076 -4.04192 3.31938 3.38188 3.43674 3.63480 3.71028 4.13493 4.41815 4.51526 4.60674 4.83367 4.95533 5.08378 5.11430 5.16578 5.20310 5.22100 5.27524 5.32151 5.34556 5.38550 5.54638 5.57397 5.66153 5.76139 5.86399 5.88768 6.00134 6.09595 6.13029 6.20632 6.34420 6.59518 6.68838 7.01437 7.12977 7.18862 7.44389 7.67295 7.86031 8.11049 8.46466 9.03054 9.59890 11.07950 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019972 B = 0.004136 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.628695 B = 6768.857599 C = 7603.826449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.065 3.935 4 C 0.061 3.939 5 O -0.362 6.362 6 C 0.188 3.812 7 N -0.458 5.458 8 C -0.005 4.005 9 C -0.131 4.131 10 C 0.033 3.967 11 C 0.014 3.986 12 N -0.463 5.463 13 C 0.159 3.841 14 C -0.504 4.504 15 H 0.062 0.938 16 C 0.054 3.946 17 N -0.900 5.900 18 Si 0.898 3.102 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.007 3.993 23 H 0.085 0.915 24 H 0.037 0.963 25 H 0.040 0.960 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.127 0.873 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.030 0.970 39 H 0.003 0.997 40 H 0.261 0.739 41 H 0.074 0.926 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.942 6.142 16.922 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C -0.012 4.012 4 C -0.016 4.016 5 O -0.277 6.277 6 C 0.023 3.977 7 N -0.186 5.186 8 C -0.134 4.134 9 C -0.169 4.169 10 C -0.059 4.059 11 C -0.115 4.115 12 N -0.185 5.185 13 C 0.033 3.967 14 C -0.543 4.543 15 H 0.081 0.919 16 C -0.147 4.147 17 N -0.540 5.540 18 Si 0.726 3.274 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.124 4.124 23 H 0.104 0.896 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.144 0.856 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.021 0.979 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.051 5.715 16.204 20.987 hybrid contribution 1.487 1.183 -0.411 1.944 sum -10.564 6.897 15.792 20.213 Atomic orbital electron populations 1.22731 0.81478 1.02779 0.99574 1.88035 1.19186 1.27115 1.95273 1.22540 0.92771 0.85505 1.00394 1.22497 0.93107 0.96829 0.89199 1.88110 1.22225 1.81347 1.36008 1.24010 0.81349 0.90714 1.01634 1.68326 1.22562 1.23787 1.03892 1.23920 0.95562 0.97968 0.95935 1.22967 0.99034 0.99399 0.95527 1.23262 0.90069 0.99107 0.93418 1.23607 1.01845 0.95001 0.91089 1.69001 1.35969 1.07981 1.05581 1.20266 0.88268 0.97039 0.91126 1.21101 1.19338 1.10725 1.03086 0.91948 1.25004 0.95495 0.95716 0.98503 1.69958 1.22860 1.28686 1.32477 0.86486 0.78370 0.80788 0.81739 1.20774 1.21224 1.19724 1.23962 0.97845 0.99213 0.91379 0.89636 0.94480 0.94123 0.92321 0.92563 0.92388 0.92527 0.94597 0.85580 0.91582 0.89967 0.88707 0.90410 0.89897 0.91317 0.95187 0.97870 0.92928 0.90766 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.09 10.67 -40.08 -0.43 -5.52 16 3 C 0.06 0.71 6.32 37.16 0.23 0.95 16 4 C 0.06 0.75 6.19 37.16 0.23 0.98 16 5 O -0.36 -5.96 10.54 -40.08 -0.42 -6.38 16 6 C 0.19 2.99 5.11 60.06 0.31 3.29 16 7 N -0.46 -7.13 6.57 -241.28 -1.59 -8.72 16 8 C -0.01 -0.06 7.52 -9.26 -0.07 -0.13 16 9 C -0.13 -1.63 8.26 -26.61 -0.22 -1.85 16 10 C 0.03 0.53 1.40 -139.74 -0.19 0.33 16 11 C 0.01 0.27 7.59 -6.89 -0.05 0.22 16 12 N -0.46 -10.20 5.71 -245.95 -1.40 -11.61 16 13 C 0.16 4.18 4.57 -4.98 -0.02 4.16 16 14 C -0.50 -14.48 9.39 -34.44 -0.32 -14.80 16 15 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 18 Si 0.90 21.97 29.54 -169.99 -5.02 16.94 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.01 0.13 6.61 -6.88 -0.05 0.08 16 23 H 0.09 0.72 8.14 -51.92 -0.42 0.29 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.72 7.97 -51.93 -0.41 0.31 16 29 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.04 0.49 6.90 -51.93 -0.36 0.13 16 31 H 0.13 2.35 6.13 -51.93 -0.32 2.03 16 32 H 0.07 0.72 7.35 -51.93 -0.38 0.34 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.07 1.24 7.91 -51.93 -0.41 0.83 16 38 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.00 0.09 7.31 -51.93 -0.38 -0.28 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.07 1.37 7.42 -51.93 -0.39 0.98 16 42 H 0.07 1.30 6.67 -51.93 -0.35 0.95 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -32.68 340.28 -9.32 -42.00 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.18 Total: -1.71 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 0.86 Total: -3.91 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -2.25 Total: -46.55 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.85 Total: -11.90 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.68 -9.32 -42.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277938697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.381 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds