Wall clock time and date at job start Mon Mar 30 2020 00:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42911 * 113.99672 * 2 1 4 4 C 1.52995 * 109.46930 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47244 * 65.00020 * 4 3 2 6 6 C 1.42909 * 113.99835 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.46752 * 80.00286 * 6 5 4 8 8 C 1.47683 * 110.99837 * 250.56679 * 7 6 5 9 9 C 1.53702 * 88.23413 * 222.38951 * 8 7 6 10 10 C 1.46422 * 110.99618 * 154.99943 * 7 6 5 11 11 C 1.52541 * 121.84935 * 265.40190 * 10 7 6 12 12 N 1.47672 * 87.65417 * 99.08116 * 11 10 7 13 13 C 1.46895 * 110.99864 * 137.94115 * 12 11 10 14 14 C 1.50702 * 109.46770 * 170.00169 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72214 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.47676 * 88.10176 * 26.14351 * 12 11 10 23 23 H 1.09007 * 109.46462 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47485 * 299.99252 * 1 2 3 25 25 H 1.08995 * 109.47203 * 60.00177 * 1 2 3 26 26 H 1.08994 * 109.46757 * 59.99962 * 3 2 1 27 27 H 1.08997 * 109.46616 * 300.00217 * 3 2 1 28 28 H 1.09005 * 109.47566 * 304.99961 * 4 3 2 29 29 H 1.09001 * 109.46802 * 185.00232 * 4 3 2 30 30 H 1.08993 * 109.47060 * 320.00077 * 6 5 4 31 31 H 1.09002 * 109.46706 * 200.00144 * 6 5 4 32 32 H 1.09003 * 113.43200 * 337.23253 * 8 7 6 33 33 H 1.09000 * 113.43037 * 107.49309 * 8 7 6 34 34 H 1.08999 * 114.22270 * 271.54700 * 9 8 7 35 35 H 1.09000 * 114.22713 * 138.65691 * 9 8 7 36 36 H 1.09000 * 113.52851 * 344.38465 * 11 10 7 37 37 H 1.08997 * 113.52247 * 213.77664 * 11 10 7 38 38 H 1.09004 * 109.47258 * 50.00493 * 13 12 11 39 39 H 1.08994 * 109.47601 * 290.00085 * 13 12 11 40 40 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 41 41 H 1.09000 * 113.51799 * 88.55081 * 22 12 11 42 42 H 1.09003 * 113.51984 * 219.15998 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 8 3.9648 0.5798 -1.2220 6 6 5.3812 0.4204 -1.3250 7 7 5.7967 -0.7671 -0.5667 8 6 6.5425 -0.3844 0.6492 9 6 7.5291 -1.5229 0.3448 10 6 7.0526 -1.3098 -1.0883 11 6 7.0772 -2.4353 -2.1177 12 7 7.2871 -1.4026 -3.1522 13 6 8.2935 -1.8351 -4.1310 14 6 8.3051 -0.8785 -5.2954 15 1 7.6325 -0.0335 -5.3070 16 6 9.1788 -1.0785 -6.3432 17 7 9.9981 -2.1071 -6.3290 18 14 9.1986 0.1116 -7.7829 19 1 10.1673 1.2034 -7.5094 20 1 9.6018 -0.6104 -9.0163 21 1 7.8425 0.6878 -7.9675 22 6 7.8947 -0.5515 -2.1094 23 1 -0.3632 -1.0278 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6885 1.8464 0.8899 27 1 1.6884 1.8464 -0.8900 28 1 3.8515 0.5684 0.8409 29 1 3.9783 2.1767 0.0890 30 1 5.8765 1.3024 -0.9192 31 1 5.6577 0.2979 -2.3722 32 1 6.9922 0.6067 0.5878 33 1 5.9775 -0.5338 1.5692 34 1 7.2469 -2.4853 0.7716 35 1 8.5750 -1.2650 0.5113 36 1 6.1259 -2.9590 -2.2126 37 1 7.9230 -3.1128 -2.0013 38 1 8.0486 -2.8363 -4.4857 39 1 9.2766 -1.8467 -3.6605 40 1 10.6125 -2.2480 -7.0663 41 1 8.9669 -0.7075 -1.9908 42 1 7.6277 0.5017 -2.1974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277938697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:07 Heat of formation + Delta-G solvation = -30.247248 kcal Electronic energy + Delta-G solvation = -21308.620861 eV Core-core repulsion = 18097.868172 eV Total energy + Delta-G solvation = -3210.752688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.51715 -39.38919 -38.47976 -37.52619 -34.91639 -31.76905 -30.75923 -30.00620 -27.17142 -27.10316 -26.86031 -24.68151 -24.11290 -23.31820 -22.02995 -19.33438 -18.54288 -18.09328 -17.72815 -17.28148 -17.21739 -16.76073 -16.43453 -16.10434 -15.92541 -15.37194 -14.96694 -14.78909 -14.51393 -14.34614 -13.83241 -13.57929 -13.28846 -13.02139 -12.92042 -12.68130 -12.58383 -12.44079 -12.37104 -12.19287 -12.04206 -11.96510 -11.58557 -11.39257 -11.00065 -10.78564 -10.63289 -10.60063 -9.79395 -9.60571 -8.24279 -6.34649 1.37856 1.39943 1.51885 2.37861 2.57388 2.90085 2.97403 3.07985 3.18895 3.39710 3.72259 3.80105 4.01892 4.13115 4.23641 4.25552 4.35471 4.43023 4.47614 4.49281 4.54798 4.57541 4.58547 4.62525 4.67241 4.72842 4.78580 4.84664 4.86723 4.88738 4.97857 5.04281 5.18867 5.46268 5.57593 5.76349 5.94405 6.07505 6.24808 6.37665 6.45237 6.79233 7.34870 8.86791 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019972 B = 0.004136 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.628695 B = 6768.857599 C = 7603.826449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.061 3.939 4 C 0.055 3.945 5 O -0.393 6.393 6 C 0.193 3.807 7 N -0.477 5.477 8 C 0.003 3.997 9 C -0.117 4.117 10 C 0.046 3.954 11 C 0.009 3.991 12 N -0.486 5.486 13 C 0.176 3.824 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.002 3.998 17 N -0.933 5.933 18 Si 0.970 3.030 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.269 1.269 22 C 0.009 3.991 23 H 0.089 0.911 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.072 0.928 38 H -0.003 1.003 39 H -0.014 1.014 40 H 0.266 0.734 41 H 0.072 0.928 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.323 7.875 18.612 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.015 4.015 4 C -0.021 4.021 5 O -0.309 6.309 6 C 0.028 3.972 7 N -0.205 5.205 8 C -0.125 4.125 9 C -0.155 4.155 10 C -0.046 4.046 11 C -0.120 4.120 12 N -0.208 5.208 13 C 0.049 3.951 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.794 3.206 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.194 1.194 22 C -0.121 4.121 23 H 0.107 0.893 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.015 0.985 39 H 0.004 0.996 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.447 7.457 17.922 23.060 hybrid contribution 1.520 0.622 -0.889 1.867 sum -10.928 8.079 17.033 21.791 Atomic orbital electron populations 1.22896 0.79743 1.03525 1.00838 1.87974 1.21310 1.28705 1.95569 1.22702 0.91945 0.84976 1.01864 1.22768 0.94124 0.97799 0.87428 1.88061 1.22385 1.82076 1.38360 1.23817 0.81688 0.91774 0.99931 1.68327 1.22590 1.24353 1.05249 1.23999 0.94955 0.98585 0.94944 1.23005 1.00370 1.00312 0.91814 1.23112 0.90542 0.96414 0.94544 1.23656 1.01370 0.95511 0.91486 1.68920 1.35009 1.10104 1.06805 1.19913 0.88439 0.94975 0.91765 1.21398 1.19564 1.11071 1.04420 0.92635 1.25919 0.94836 0.97468 1.01345 1.70073 1.23411 1.30280 1.33542 0.85375 0.78639 0.78595 0.77976 1.19381 1.20478 1.19371 1.23929 0.97992 0.99197 0.91004 0.89291 0.92257 0.93741 0.89017 0.92756 0.92510 0.89882 0.92133 0.89225 0.89862 0.88074 0.87676 0.88513 0.90917 0.90985 0.98493 0.99639 0.92547 0.90962 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.42 -10.77 10.67 -144.34 -1.54 -12.31 16 3 C 0.06 1.24 6.32 71.98 0.45 1.70 16 4 C 0.06 1.24 6.19 71.98 0.45 1.69 16 5 O -0.39 -12.71 10.54 -144.34 -1.52 -14.23 16 6 C 0.19 5.98 5.11 127.69 0.65 6.63 16 7 N -0.48 -14.17 6.57 ******* -6.69 -20.86 16 8 C 0.00 0.06 7.52 82.35 0.62 0.68 16 9 C -0.12 -2.56 8.26 30.67 0.25 -2.31 16 10 C 0.05 1.43 1.40 -0.56 0.00 1.42 16 11 C 0.01 0.36 7.59 83.90 0.64 1.00 16 12 N -0.49 -22.22 5.71 -932.05 -5.32 -27.55 16 13 C 0.18 9.69 4.57 85.56 0.39 10.08 16 14 C -0.53 -31.12 9.39 25.60 0.24 -30.88 16 15 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 16 C 0.00 0.14 5.46 84.66 0.46 0.61 16 17 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 18 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 22 C 0.01 0.35 6.61 83.90 0.55 0.90 16 23 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.28 7.97 -2.38 -0.02 1.26 16 29 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 30 H 0.06 1.52 6.90 -2.39 -0.02 1.50 16 31 H 0.09 3.41 6.13 -2.39 -0.01 3.40 16 32 H 0.08 1.48 7.35 -2.39 -0.02 1.46 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.07 2.68 7.91 -2.39 -0.02 2.66 16 38 H 0.00 -0.18 8.08 -2.38 -0.02 -0.20 16 39 H -0.01 -0.81 7.31 -2.39 -0.02 -0.82 16 40 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 41 H 0.07 2.67 7.42 -2.39 -0.02 2.66 16 42 H 0.08 2.77 6.67 -2.39 -0.02 2.75 16 Total: -1.00 -72.73 340.28 -5.83 -78.56 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.98 Total: 12.44 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 5.96 Total: -6.78 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -11.73 Total: -105.06 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -3.06 Total: -26.54 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -72.73 -5.83 -78.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277938697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.314 kcal (2) G-P(sol) polarization free energy of solvation -72.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds