Wall clock time and date at job start Mon Mar 30 2020 00:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42892 * 113.99953 * 2 1 4 4 C 1.50703 * 109.47146 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99620 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00126 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99924 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.46747 * 35.00690 * 7 6 4 9 9 C 1.53000 * 109.46761 * 155.00272 * 7 6 4 10 10 C 1.53004 * 109.46787 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47195 * 300.00235 * 10 9 7 12 12 H 1.09000 * 109.46927 * 300.00042 * 11 10 9 13 13 C 1.53004 * 109.47195 * 179.97438 * 11 10 9 14 14 N 1.46499 * 109.47198 * 174.99817 * 13 11 10 15 15 C 1.36939 * 119.99933 * 180.27608 * 14 13 11 16 16 H 1.08001 * 119.99700 * 359.72658 * 15 14 13 17 17 C 1.38810 * 120.00095 * 179.71972 * 15 14 13 18 18 N 1.31612 * 120.00054 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99751 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47517 * 89.99708 * 19 17 15 21 21 H 1.48502 * 109.46736 * 209.99481 * 19 17 15 22 22 H 1.48496 * 109.47375 * 329.99177 * 19 17 15 23 23 C 1.53000 * 109.47445 * 60.00168 * 11 10 9 24 24 C 1.52995 * 109.47244 * 275.00521 * 7 6 4 25 25 H 1.09002 * 109.46809 * 299.99791 * 1 2 3 26 26 H 1.08998 * 109.47189 * 59.99772 * 1 2 3 27 27 H 1.09003 * 109.46807 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47345 * 60.00323 * 3 2 1 29 29 H 1.09001 * 109.47422 * 300.00134 * 3 2 1 30 30 H 0.96997 * 120.00138 * 0.02562 * 6 4 3 31 31 H 1.09000 * 109.47161 * 60.00109 * 9 7 6 32 32 H 1.09003 * 109.47289 * 299.99959 * 9 7 6 33 33 H 1.08998 * 109.47252 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.46771 * 60.00388 * 10 9 7 35 35 H 1.09009 * 109.46730 * 54.99604 * 13 11 10 36 36 H 1.08998 * 109.46846 * 295.00148 * 13 11 10 37 37 H 0.97001 * 119.99790 * 359.97438 * 14 13 11 38 38 H 0.96998 * 120.00381 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47149 * 59.99462 * 23 11 10 40 40 H 1.09003 * 109.47289 * 180.02562 * 23 11 10 41 41 H 1.09000 * 109.46927 * 300.00043 * 24 7 6 42 42 H 1.08998 * 109.47557 * 59.99531 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2765 2.2968 0.0002 7 6 5.7370 2.1811 0.0014 8 1 6.0330 1.3127 -0.5872 9 6 6.3490 3.4436 -0.6088 10 6 7.8742 3.3225 -0.6082 11 6 8.3721 3.1577 0.8291 12 1 8.0763 4.0260 1.4178 13 6 9.8973 3.0359 0.8297 14 7 10.3837 2.9981 2.2111 15 6 11.7261 2.8969 2.4618 16 1 12.4259 2.8405 1.6411 17 6 12.1874 2.8670 3.7706 18 7 13.4776 2.7692 4.0116 19 14 10.9769 2.9641 5.1900 20 1 10.5502 1.5938 5.5715 21 1 11.6280 3.6212 6.3517 22 1 9.7902 3.7546 4.7753 23 6 7.7601 1.8951 1.4393 24 6 6.2344 2.0166 1.4389 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8594 3.1725 -0.0001 31 1 6.0528 4.3119 -0.0203 32 1 5.9946 3.5607 -1.6330 33 1 8.3103 4.2217 -1.0433 34 1 8.1700 2.4542 -1.1970 35 1 10.3305 3.8938 0.3152 36 1 10.1888 2.1195 0.3166 37 1 9.7551 3.0493 2.9481 38 1 13.8000 2.7479 4.9262 39 1 8.0558 1.0269 0.8505 40 1 8.1145 1.7780 2.4634 41 1 5.9382 2.8850 2.0274 42 1 5.7983 1.1173 1.8737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280356450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:52 Heat of formation + Delta-G solvation = -86.711130 kcal Electronic energy + Delta-G solvation = -20829.341759 eV Core-core repulsion = 17616.140613 eV Total energy + Delta-G solvation = -3213.201146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27927 -38.67360 -37.57595 -35.32717 -33.74472 -31.57421 -30.75659 -30.04553 -28.61933 -26.34118 -24.95417 -22.86895 -22.26023 -20.85027 -20.68549 -19.72603 -17.67075 -17.48846 -17.14180 -16.62953 -15.87643 -15.23120 -14.87749 -14.58913 -14.33819 -14.27077 -13.99270 -13.43754 -13.38402 -12.93567 -12.67520 -12.50601 -12.27372 -12.14511 -11.99636 -11.86068 -11.29052 -11.09795 -11.04456 -10.80331 -10.38047 -10.23082 -10.21562 -10.15620 -10.04540 -9.77733 -9.53550 -9.17420 -8.84759 -7.17402 -5.72928 -3.07532 2.39110 2.54161 3.39747 3.42745 3.47563 3.70581 4.39401 4.62151 4.62665 4.67529 4.68688 4.75547 4.88811 4.93569 4.97498 5.20445 5.21984 5.24931 5.42922 5.47148 5.54557 5.58430 5.59817 5.82796 5.89805 5.97212 6.05744 6.15108 6.20419 6.30898 6.35917 6.47885 6.56715 6.59527 6.76588 6.88926 7.26199 8.01395 8.04466 8.46598 9.26288 9.98831 10.19198 11.45803 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.031364 B = 0.003350 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.528303 B = 8356.006464 C = 8917.933300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.043 3.957 4 C 0.511 3.489 5 O -0.516 6.516 6 N -0.726 5.726 7 C 0.146 3.854 8 H 0.089 0.911 9 C -0.122 4.122 10 C -0.107 4.107 11 C -0.099 4.099 12 H 0.069 0.931 13 C 0.161 3.839 14 N -0.756 5.756 15 C -0.241 4.241 16 H 0.090 0.910 17 C 0.002 3.998 18 N -0.936 5.936 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.278 1.278 23 C -0.109 4.109 24 C -0.128 4.128 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.398 0.602 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.025 0.975 36 H 0.027 0.973 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.234 1.994 -10.445 29.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.038 4.038 4 C 0.295 3.705 5 O -0.390 6.390 6 N -0.379 5.379 7 C 0.043 3.957 8 H 0.108 0.892 9 C -0.160 4.160 10 C -0.145 4.145 11 C -0.118 4.118 12 H 0.087 0.913 13 C 0.034 3.966 14 N -0.402 5.402 15 C -0.371 4.371 16 H 0.107 0.893 17 C -0.193 4.193 18 N -0.584 5.584 19 Si 0.714 3.286 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.204 1.204 23 C -0.147 4.147 24 C -0.167 4.167 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.232 0.768 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -26.501 0.974 -10.492 28.519 hybrid contribution -1.213 0.823 1.203 1.896 sum -27.714 1.797 -9.289 29.284 Atomic orbital electron populations 1.22849 0.80354 1.03408 1.00084 1.88036 1.19792 1.25156 1.95403 1.22258 0.91898 0.87074 1.02524 1.20248 0.88568 0.84831 0.76807 1.90759 1.74516 1.26434 1.47275 1.46027 1.07365 1.08410 1.76107 1.21094 0.77577 0.99571 0.97491 0.89244 1.21791 0.96808 0.96780 1.00649 1.21458 0.93344 1.02512 0.97230 1.21412 0.96682 0.98132 0.95566 0.91251 1.20664 0.90029 0.98486 0.87415 1.42741 1.05132 1.90581 1.01702 1.19082 0.82299 1.42212 0.93538 0.89264 1.24670 0.95565 1.02207 0.96883 1.69699 1.11707 1.57625 1.19387 0.86554 0.80947 0.77857 0.83245 1.21036 1.21775 1.20385 1.21525 0.92879 0.98121 1.02170 1.21952 0.96965 1.02032 0.95752 0.93780 0.93818 0.89028 0.90277 0.90314 0.76811 0.91454 0.91567 0.91224 0.91477 0.95664 0.95487 0.80678 0.93119 0.91575 0.91156 0.92006 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.88 10.24 -55.14 -0.56 -4.45 16 3 C 0.04 0.33 6.42 36.01 0.23 0.56 16 4 C 0.51 5.78 7.87 -10.98 -0.09 5.70 16 5 O -0.52 -8.56 16.16 -14.35 -0.23 -8.79 16 6 N -0.73 -6.42 5.08 -53.81 -0.27 -6.70 16 7 C 0.15 1.60 2.45 -67.93 -0.17 1.43 16 8 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 9 C -0.12 -1.13 5.39 -26.73 -0.14 -1.27 16 10 C -0.11 -1.23 5.20 -26.73 -0.14 -1.37 16 11 C -0.10 -1.47 2.23 -90.62 -0.20 -1.67 16 12 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 13 C 0.16 3.12 5.65 -4.04 -0.02 3.10 16 14 N -0.76 -18.26 5.13 -59.90 -0.31 -18.57 16 15 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 16 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 17 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 18 N -0.94 -29.94 13.97 55.49 0.78 -29.16 16 19 Si 0.88 22.53 27.74 -169.99 -4.71 17.81 16 20 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 22 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 23 C -0.11 -1.63 5.08 -26.70 -0.14 -1.77 16 24 C -0.13 -1.63 5.50 -26.70 -0.15 -1.78 16 25 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.40 2.13 8.60 -40.82 -0.35 1.78 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.03 0.50 8.14 -51.92 -0.42 0.07 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.36 8.48 4.71 -40.82 -0.19 8.29 16 38 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.20 7.18 -51.93 -0.37 0.82 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 338.39 15.07 5.10 5.10 Total: -1.00 -36.20 338.39 -7.41 -43.61 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.24 Total: 4.09 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 0.05 Total: -2.95 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.19 Total: -54.43 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.80 Total: -13.24 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.81 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.20 -7.41 -43.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280356450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.102 kcal (2) G-P(sol) polarization free energy of solvation -36.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds