Wall clock time and date at job start Mon Mar 30 2020 01:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46910 * 110.99534 * 2 1 4 4 C 1.50701 * 109.47057 * 293.95505 * 3 2 1 5 5 H 1.08000 * 120.00041 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99807 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99618 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99912 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46988 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46666 * 120.00020 * 8 6 4 11 11 H 1.48500 * 109.46910 * 240.00019 * 8 6 4 12 12 C 1.46893 * 111.00464 * 123.95323 * 2 1 3 13 13 C 1.52999 * 109.47418 * 163.84341 * 12 2 1 14 14 H 1.09005 * 109.46772 * 56.98185 * 13 12 2 15 15 O 1.42893 * 109.47148 * 296.98480 * 13 12 2 16 16 C 1.52994 * 109.47126 * 176.98215 * 13 12 2 17 17 N 1.46904 * 109.47132 * 185.00026 * 16 13 12 18 18 C 1.46897 * 111.00163 * 179.97438 * 17 16 13 19 19 C 1.53783 * 113.61377 * 131.99817 * 18 17 16 20 20 C 1.53779 * 87.08256 * 89.11882 * 19 18 17 21 21 C 1.52993 * 113.61655 * 139.98480 * 20 19 18 22 22 C 1.53002 * 113.61068 * 270.80207 * 20 19 18 23 23 C 1.53775 * 87.17221 * 25.38910 * 20 19 18 24 24 H 1.09004 * 109.47358 * 301.82976 * 1 2 3 25 25 H 1.08997 * 109.47512 * 61.83322 * 1 2 3 26 26 H 1.09002 * 109.47084 * 181.83526 * 1 2 3 27 27 H 1.08998 * 109.47133 * 53.95570 * 3 2 1 28 28 H 1.08998 * 109.46722 * 173.95922 * 3 2 1 29 29 H 0.97004 * 119.99469 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46811 * 43.84400 * 12 2 1 31 31 H 1.09003 * 109.47119 * 283.84988 * 12 2 1 32 32 H 0.96698 * 114.00633 * 299.99816 * 15 13 12 33 33 H 1.09002 * 109.47029 * 65.00272 * 16 13 12 34 34 H 1.09003 * 109.47444 * 305.00356 * 16 13 12 35 35 H 1.00900 * 110.99517 * 56.04994 * 17 16 13 36 36 H 1.08999 * 112.85075 * 0.80265 * 18 17 16 37 37 H 1.09004 * 113.61318 * 334.56785 * 19 18 17 38 38 H 1.09004 * 113.69134 * 203.67998 * 19 18 17 39 39 H 1.09006 * 109.47427 * 181.53346 * 21 20 19 40 40 H 1.09005 * 109.46646 * 301.52802 * 21 20 19 41 41 H 1.09000 * 109.47446 * 61.52738 * 21 20 19 42 42 H 1.09000 * 109.46986 * 295.90262 * 22 20 19 43 43 H 1.09000 * 109.47232 * 55.90755 * 22 20 19 44 44 H 1.09007 * 109.46534 * 175.90641 * 22 20 19 45 45 H 1.09004 * 113.61541 * 89.16099 * 23 20 19 46 46 H 1.08998 * 113.62145 * 220.06102 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0485 6 6 2.0265 3.3496 -1.5284 7 7 2.7116 4.0020 -0.6149 8 14 1.5826 4.1870 -3.1382 9 1 0.8154 3.2442 -3.9914 10 1 0.7545 5.3878 -2.8596 11 1 2.8245 4.5947 -3.8430 12 6 1.9955 -0.7659 1.1375 13 6 3.4718 -1.0874 0.8964 14 1 4.0243 -0.1611 0.7389 15 8 3.5957 -1.9183 -0.2596 16 6 4.0398 -1.8195 2.1138 17 7 5.4836 -2.0221 1.9338 18 6 6.0646 -2.7232 3.0865 19 6 6.9706 -3.9032 2.6971 20 6 8.1320 -2.8962 2.6567 21 6 9.4374 -3.4424 3.2382 22 6 8.3215 -2.2337 1.2906 23 6 7.3254 -2.0420 3.6489 24 1 -0.3634 0.5420 0.8731 25 1 -0.3634 0.4851 -0.9059 26 1 -0.3633 -1.0272 0.0329 27 1 1.5610 1.9274 0.8309 28 1 3.0796 1.3445 0.1081 29 1 2.9861 4.9182 -0.7769 30 1 1.4338 -1.6942 1.2416 31 1 1.8961 -0.1769 2.0493 32 1 3.1277 -2.7616 -0.1899 33 1 3.5475 -2.7863 2.2187 34 1 3.8654 -1.2239 3.0100 35 1 5.9541 -1.1447 1.7700 36 1 5.3246 -2.9733 3.8468 37 1 6.7324 -4.3343 1.7246 38 1 7.0715 -4.6550 3.4800 39 1 10.2039 -2.6682 3.2011 40 1 9.2759 -3.7443 4.2731 41 1 9.7626 -4.3040 2.6550 42 1 8.5992 -2.9893 0.5558 43 1 7.3904 -1.7557 0.9863 44 1 9.1101 -1.4840 1.3567 45 1 7.5228 -2.2829 4.6935 46 1 7.3732 -0.9725 3.4440 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336809173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:04 Heat of formation + Delta-G solvation = -28.898066 kcal Electronic energy + Delta-G solvation = -21461.625988 eV Core-core repulsion = 18386.764899 eV Total energy + Delta-G solvation = -3074.861089 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07237 -37.89997 -35.56229 -33.94669 -32.45570 -30.46941 -28.87192 -27.46051 -27.24035 -25.83729 -25.27780 -23.35598 -21.58840 -21.30844 -19.96758 -18.29874 -16.56102 -16.37208 -15.68014 -15.27844 -15.12478 -14.66034 -14.39426 -14.35399 -13.98255 -13.91240 -13.31581 -13.10498 -12.74288 -12.58415 -12.53658 -12.17140 -11.94715 -11.83227 -11.45384 -11.39265 -11.24750 -11.11433 -10.92176 -10.84290 -10.64958 -10.60412 -10.32426 -10.17450 -10.03058 -9.72335 -9.41558 -9.07947 -8.40146 -8.31906 -7.17569 -5.99834 -3.99854 3.33851 3.41072 3.46662 3.95833 4.40055 4.46240 4.50085 4.69660 4.74598 4.95967 4.98771 5.14671 5.33420 5.35890 5.39957 5.51021 5.51759 5.56246 5.60763 5.66161 5.69355 5.76278 5.77003 5.82937 5.87515 5.92880 6.06536 6.12058 6.12375 6.17963 6.35628 6.36468 6.43261 6.54136 6.73756 7.10722 7.30347 7.33221 7.37866 7.83692 8.11186 8.20502 8.29951 8.58904 9.07720 9.64028 11.11412 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.022801 B = 0.003690 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.731459 B = 7586.496973 C = 8291.577725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.026 3.974 13 C 0.118 3.882 14 H 0.101 0.899 15 O -0.531 6.531 16 C 0.028 3.972 17 N -0.658 5.658 18 C 0.064 3.936 19 C -0.125 4.125 20 C -0.082 4.082 21 C -0.136 4.136 22 C -0.135 4.135 23 C -0.153 4.153 24 H 0.009 0.991 25 H 0.073 0.927 26 H 0.042 0.958 27 H -0.012 1.012 28 H 0.031 0.969 29 H 0.260 0.740 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.360 0.640 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.346 0.654 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.049 0.951 45 H 0.081 0.919 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 -14.834 9.837 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.104 4.104 13 C 0.057 3.943 14 H 0.118 0.882 15 O -0.334 6.334 16 C -0.102 4.102 17 N -0.291 5.291 18 C -0.047 4.047 19 C -0.164 4.164 20 C -0.082 4.082 21 C -0.193 4.193 22 C -0.192 4.192 23 C -0.192 4.192 24 H 0.028 0.972 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.005 0.995 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.205 0.795 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.168 0.832 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.100 0.900 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.287 -14.932 8.840 19.230 hybrid contribution -0.790 1.278 1.034 1.824 sum 7.497 -13.654 9.874 18.443 Atomic orbital electron populations 1.22194 0.88887 0.98850 1.00906 1.62038 1.06486 1.17787 1.39197 1.19782 0.95469 0.81508 0.96538 1.21197 1.34438 0.96750 1.01678 0.91824 1.24988 0.95366 0.97384 0.96986 1.69966 1.38688 1.11369 1.34066 0.86444 0.78156 0.79221 0.83629 1.19636 1.21221 1.20983 1.22684 0.96023 0.98159 0.93504 1.21875 0.94469 0.93737 0.84169 0.88165 1.86683 1.75805 1.31905 1.38989 1.22813 0.89060 1.00344 0.98020 1.60434 1.02774 1.27605 1.38245 1.22592 0.94338 0.96210 0.91513 1.23161 0.95256 0.95853 1.02084 1.21717 0.93861 0.96726 0.95894 1.21739 0.96846 1.00636 1.00099 1.21727 1.02787 1.00154 0.94549 1.23668 0.97000 0.99451 0.99082 0.97217 0.90805 0.93872 0.99472 0.95100 0.93071 0.92123 0.95374 0.79478 0.91007 0.94671 0.83245 0.91455 0.90545 0.90612 0.92874 0.92970 0.92724 0.92600 0.90144 0.93191 0.90019 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.32 60.06 0.56 1.35 16 2 N -0.53 -11.61 4.63 -244.36 -1.13 -12.74 16 3 C 0.19 5.07 4.57 -4.97 -0.02 5.04 16 4 C -0.50 -14.41 8.54 -34.44 -0.29 -14.70 16 5 H 0.06 1.83 7.10 -52.49 -0.37 1.45 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.03 0.46 4.62 -3.83 -0.02 0.44 16 13 C 0.12 1.94 3.18 -26.73 -0.09 1.85 16 14 H 0.10 1.96 6.52 -51.93 -0.34 1.62 16 15 O -0.53 -9.24 13.20 -35.23 -0.47 -9.71 16 16 C 0.03 0.35 5.09 -3.82 -0.02 0.33 16 17 N -0.66 -8.14 5.28 -105.77 -0.56 -8.70 16 18 C 0.06 0.67 4.38 -66.81 -0.29 0.38 16 19 C -0.13 -1.24 7.05 -25.92 -0.18 -1.42 16 20 C -0.08 -0.79 1.39 -153.70 -0.21 -1.01 16 21 C -0.14 -1.14 9.18 37.15 0.34 -0.80 16 22 C -0.13 -1.45 9.03 37.16 0.34 -1.11 16 23 C -0.15 -1.49 6.83 -25.83 -0.18 -1.66 16 24 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 25 H 0.07 1.55 6.91 -51.93 -0.36 1.20 16 26 H 0.04 0.71 7.96 -51.93 -0.41 0.30 16 27 H -0.01 -0.35 8.11 -51.93 -0.42 -0.77 16 28 H 0.03 0.87 6.37 -51.93 -0.33 0.53 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.06 0.91 7.87 -51.93 -0.41 0.50 16 31 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 32 H 0.36 4.89 9.05 45.56 0.41 5.31 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.35 4.49 6.58 -39.29 -0.26 4.23 16 36 H 0.07 0.69 7.74 -51.93 -0.40 0.29 16 37 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.40 7.98 -51.93 -0.41 -0.02 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.98 4.97 -51.93 -0.26 0.72 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.71 7.99 -51.93 -0.41 0.29 16 46 H 0.07 0.70 7.80 -51.93 -0.41 0.29 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -30.94 358.35 -8.94 -39.88 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.74 Total: 4.99 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -0.16 Total: -9.85 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.95 Total: -47.73 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.47 Total: -9.71 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.94 -8.94 -39.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336809173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.986 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds