Wall clock time and date at job start Mon Mar 30 2020 01:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46901 * 110.99817 * 2 1 4 4 C 1.50694 * 109.46824 * 66.04815 * 3 2 1 5 5 H 1.07997 * 120.00539 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99682 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00206 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99945 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46993 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46852 * 119.99853 * 8 6 4 11 11 H 1.48502 * 109.47187 * 240.00049 * 8 6 4 12 12 C 1.46902 * 110.99526 * 236.04782 * 2 1 3 13 13 C 1.53002 * 109.46973 * 199.84770 * 12 2 1 14 14 H 1.09006 * 109.47004 * 300.46325 * 13 12 2 15 15 O 1.42895 * 109.47035 * 60.46461 * 13 12 2 16 16 C 1.52993 * 109.47200 * 180.46628 * 13 12 2 17 17 N 1.46897 * 109.47180 * 180.02562 * 16 13 12 18 18 C 1.46905 * 111.00354 * 180.02562 * 17 16 13 19 19 C 1.53782 * 113.61171 * 254.13841 * 18 17 16 20 20 C 1.53948 * 87.01807 * 220.04486 * 19 18 17 21 21 C 1.52999 * 113.53800 * 270.81070 * 20 19 18 22 22 C 1.53002 * 113.74710 * 139.94295 * 20 19 18 23 23 C 1.53777 * 87.11531 * 25.36007 * 20 19 18 24 24 H 1.08997 * 109.46865 * 188.77647 * 1 2 3 25 25 H 1.09002 * 109.47016 * 308.76850 * 1 2 3 26 26 H 1.08998 * 109.47305 * 68.77646 * 1 2 3 27 27 H 1.08991 * 109.46858 * 186.04853 * 3 2 1 28 28 H 1.09007 * 109.47167 * 306.05151 * 3 2 1 29 29 H 0.97009 * 119.99955 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.46768 * 79.84919 * 12 2 1 31 31 H 1.08991 * 109.47671 * 319.85094 * 12 2 1 32 32 H 0.96699 * 113.99942 * 59.99837 * 15 13 12 33 33 H 1.08996 * 109.47164 * 300.00263 * 16 13 12 34 34 H 1.09005 * 109.47453 * 59.99653 * 16 13 12 35 35 H 1.00904 * 110.99841 * 303.95241 * 17 16 13 36 36 H 1.09002 * 112.84657 * 25.32330 * 18 17 16 37 37 H 1.09009 * 113.61497 * 334.56105 * 19 18 17 38 38 H 1.08996 * 113.61459 * 105.46365 * 19 18 17 39 39 H 1.09003 * 109.47731 * 157.49572 * 21 20 19 40 40 H 1.09005 * 109.46879 * 277.49871 * 21 20 19 41 41 H 1.09000 * 109.46807 * 37.49062 * 21 20 19 42 42 H 1.09003 * 109.46784 * 322.40504 * 22 20 19 43 43 H 1.09003 * 109.46848 * 82.39670 * 22 20 19 44 44 H 1.08993 * 109.47744 * 202.40207 * 22 20 19 45 45 H 1.08994 * 113.62146 * 220.09408 * 23 20 19 46 46 H 1.09003 * 113.61219 * 89.18386 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0747 1.5112 2.0488 6 6 2.0277 3.3490 1.5289 7 7 2.7128 4.0015 0.6154 8 14 1.5839 4.1864 3.1388 9 1 0.8167 3.2436 3.9920 10 1 2.8259 4.5928 3.8441 11 1 0.7569 5.3879 2.8603 12 6 1.9954 -0.7660 -1.1377 13 6 3.4449 -1.1666 -0.8558 14 1 4.0464 -0.2705 -0.7029 15 8 3.4946 -1.9797 0.3182 16 6 3.9968 -1.9544 -2.0455 17 7 5.3883 -2.3396 -1.7747 18 6 5.9527 -3.0990 -2.8984 19 6 6.0937 -4.6041 -2.6158 20 6 7.4434 -4.5342 -3.3529 21 6 7.3300 -4.7751 -4.8595 22 6 8.5463 -5.3692 -2.6992 23 6 7.4880 -3.0459 -2.9687 24 1 -0.3633 -1.0156 0.1568 25 1 -0.3633 0.6435 0.8013 26 1 -0.3634 0.3720 -0.9579 27 1 3.0797 1.3444 -0.1083 28 1 1.5610 1.9274 -0.8309 29 1 2.9880 4.9175 0.7778 30 1 1.9565 -0.1525 -2.0378 31 1 1.3924 -1.6622 -1.2825 32 1 2.9804 -2.7961 0.2533 33 1 3.3954 -2.8504 -2.1985 34 1 3.9589 -1.3342 -2.9411 35 1 5.9534 -1.5302 -1.5656 36 1 5.4642 -2.8769 -3.8472 37 1 6.1867 -4.8425 -1.5562 38 1 5.3484 -5.2155 -3.1245 39 1 8.1902 -4.3346 -5.3638 40 1 7.3039 -5.8471 -5.0551 41 1 6.4150 -4.3152 -5.2331 42 1 8.4522 -5.3103 -1.6148 43 1 8.4519 -6.4078 -3.0162 44 1 9.5205 -4.9844 -3.0007 45 1 7.8666 -2.4013 -3.7618 46 1 7.9628 -2.8575 -2.0058 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336809175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:06 Heat of formation + Delta-G solvation = -60.107325 kcal Electronic energy + Delta-G solvation = -21154.170316 eV Core-core repulsion = 18077.955892 eV Total energy + Delta-G solvation = -3076.214424 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71851 -39.33868 -37.19279 -35.23047 -34.60410 -31.57122 -29.96909 -29.19411 -28.26556 -26.87681 -26.56187 -25.14892 -22.85945 -22.20956 -21.54561 -19.12010 -18.60789 -17.56108 -17.04894 -16.77355 -16.35408 -16.19373 -15.78499 -15.63051 -15.14702 -15.01898 -14.61012 -14.39864 -14.05034 -13.95172 -13.64262 -13.58734 -13.18376 -12.95497 -12.85936 -12.67905 -12.57008 -12.55441 -12.40071 -12.30210 -12.16417 -11.88536 -11.62976 -11.51908 -11.31147 -11.17119 -10.94319 -10.62165 -10.54711 -9.32145 -8.94371 -8.21177 -6.30298 1.39348 1.40907 1.54407 2.40075 2.97590 3.11615 3.45413 3.57395 3.68380 3.76939 3.87132 3.93394 4.02302 4.23297 4.36102 4.37927 4.44676 4.48742 4.57344 4.61389 4.75175 4.77414 4.79785 4.80689 4.90558 4.96258 4.97603 5.04860 5.07875 5.12136 5.17814 5.22502 5.24156 5.27051 5.29591 5.55060 5.60544 5.65011 6.05990 6.18443 6.34023 6.38481 6.65019 6.85798 7.13937 7.39035 8.90255 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.029504 B = 0.003168 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.792197 B = 8834.951281 C = 9237.464986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.542 5.542 3 C 0.209 3.791 4 C -0.521 4.521 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.279 1.279 11 H -0.276 1.276 12 C 0.027 3.973 13 C 0.127 3.873 14 H 0.058 0.942 15 O -0.551 6.551 16 C 0.043 3.957 17 N -0.676 5.676 18 C 0.055 3.945 19 C -0.114 4.114 20 C -0.085 4.085 21 C -0.127 4.127 22 C -0.132 4.132 23 C -0.134 4.134 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.012 0.988 27 H 0.003 0.997 28 H -0.041 1.041 29 H 0.264 0.736 30 H 0.026 0.974 31 H 0.096 0.904 32 H 0.377 0.623 33 H 0.089 0.911 34 H 0.037 0.963 35 H 0.338 0.662 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.904 -18.639 -10.782 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.266 5.266 3 C 0.083 3.917 4 C -0.559 4.559 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.188 1.188 10 H -0.205 1.205 11 H -0.202 1.202 12 C -0.103 4.103 13 C 0.067 3.933 14 H 0.076 0.924 15 O -0.356 6.356 16 C -0.088 4.088 17 N -0.306 5.306 18 C -0.054 4.054 19 C -0.152 4.152 20 C -0.086 4.086 21 C -0.184 4.184 22 C -0.190 4.190 23 C -0.172 4.172 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.030 0.970 27 H 0.021 0.979 28 H -0.024 1.024 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.114 0.886 32 H 0.225 0.775 33 H 0.107 0.893 34 H 0.055 0.945 35 H 0.156 0.844 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.333 -18.783 -9.820 22.428 hybrid contribution -0.611 1.763 -0.956 2.097 sum 6.722 -17.019 -10.776 21.236 Atomic orbital electron populations 1.22251 0.87474 1.01754 0.99458 1.61940 1.07913 1.15060 1.41719 1.19382 0.93678 0.83947 0.94725 1.21502 1.34609 0.97412 1.02408 0.92124 1.25922 0.95068 0.98099 1.00731 1.70089 1.39501 1.11870 1.36140 0.85338 0.78089 0.78202 0.79019 1.18797 1.20452 1.20179 1.22792 0.97201 0.98555 0.91705 1.21636 0.93943 0.92446 0.85287 0.92386 1.86625 1.74240 1.36664 1.38063 1.22549 0.90996 0.99392 0.95815 1.60553 1.02252 1.28062 1.39741 1.23092 0.94804 0.95494 0.92054 1.23159 0.96532 0.94999 1.00496 1.21701 0.95851 0.94903 0.96130 1.21606 1.01885 1.02203 0.92712 1.21691 0.97644 0.99628 1.00004 1.23304 0.94989 0.97072 1.01842 0.90048 0.92657 0.96953 0.97902 1.02372 0.92726 0.95588 0.88622 0.77539 0.89280 0.94519 0.84381 0.91137 0.90393 0.91561 0.91965 0.91559 0.92704 0.93016 0.91922 0.92272 0.91285 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 9.37 127.69 1.20 2.70 16 2 N -0.54 -23.93 4.56 -927.04 -4.22 -28.15 16 3 C 0.21 11.50 4.55 85.56 0.39 11.89 16 4 C -0.52 -30.61 8.39 25.60 0.21 -30.40 16 5 H 0.06 3.53 7.17 -2.91 -0.02 3.51 16 6 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 7 N -0.94 -57.52 13.29 21.45 0.28 -57.24 16 8 Si 0.97 45.56 29.54 68.60 2.03 47.58 16 9 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.03 0.92 4.66 86.30 0.40 1.32 16 13 C 0.13 4.25 3.24 30.59 0.10 4.35 16 14 H 0.06 2.40 6.78 -2.38 -0.02 2.39 16 15 O -0.55 -19.21 13.08 -148.98 -1.95 -21.16 16 16 C 0.04 1.07 5.20 86.30 0.45 1.52 16 17 N -0.68 -16.70 6.42 -488.86 -3.14 -19.83 16 18 C 0.06 1.10 3.77 45.44 0.17 1.27 16 19 C -0.11 -2.06 7.01 31.18 0.22 -1.84 16 20 C -0.09 -1.32 1.39 -51.60 -0.07 -1.39 16 21 C -0.13 -1.64 9.07 71.98 0.65 -0.98 16 22 C -0.13 -1.87 9.20 71.98 0.66 -1.21 16 23 C -0.13 -2.41 6.82 31.12 0.21 -2.19 16 24 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.05 2.36 6.67 -2.39 -0.02 2.34 16 26 H 0.01 0.45 8.13 -2.39 -0.02 0.43 16 27 H 0.00 0.17 6.63 -2.39 -0.02 0.16 16 28 H -0.04 -2.45 8.12 -2.38 -0.02 -2.47 16 29 H 0.26 15.19 8.31 -92.70 -0.77 14.41 16 30 H 0.03 0.93 8.00 -2.39 -0.02 0.91 16 31 H 0.10 2.62 7.94 -2.39 -0.02 2.60 16 32 H 0.38 9.94 9.05 -74.06 -0.67 9.27 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 0.91 8.13 -2.38 -0.02 0.89 16 35 H 0.34 8.96 8.56 -89.69 -0.77 8.19 16 36 H 0.07 1.37 7.39 -2.39 -0.02 1.35 16 37 H 0.08 1.62 7.98 -2.38 -0.02 1.60 16 38 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 41 H 0.05 0.72 7.34 -2.39 -0.02 0.71 16 42 H 0.05 0.80 7.96 -2.39 -0.02 0.78 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 46 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16 Total: -1.00 -67.80 363.60 -2.44 -70.25 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.50 Total: 23.09 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 5.06 Total: -14.55 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -7.08 Total: -105.22 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -1.95 Total: -21.16 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -67.80 -2.44 -70.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336809175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.139 kcal (2) G-P(sol) polarization free energy of solvation -67.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds