Wall clock time and date at job start Mon Mar 30 2020 00:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00221 * 2 1 4 4 C 1.52995 * 109.46893 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47036 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00038 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00167 * 180.02562 * 5 4 3 8 8 C 1.47486 * 125.59413 * 0.02562 * 7 5 4 9 9 C 1.54323 * 107.03754 * 181.00840 * 8 7 5 10 10 C 1.55153 * 103.10236 * 22.24109 * 9 8 7 11 11 H 1.09002 * 111.00696 * 82.51784 * 10 9 8 12 12 C 1.53002 * 111.00503 * 206.33608 * 10 9 8 13 13 C 1.52999 * 109.47139 * 293.54399 * 12 10 9 14 14 N 1.46494 * 109.47241 * 180.02562 * 13 12 10 15 15 C 1.36935 * 120.00026 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00335 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00156 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00122 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00506 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47258 * 59.99629 * 19 17 15 21 21 H 1.48499 * 109.47556 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47136 * 300.00030 * 19 17 15 23 23 C 1.47428 * 125.64860 * 180.02562 * 7 5 4 24 24 H 1.08995 * 109.47127 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47398 * 300.00377 * 1 2 3 26 26 H 1.08999 * 109.46777 * 59.99645 * 1 2 3 27 27 H 1.08992 * 109.46763 * 59.99859 * 3 2 1 28 28 H 1.09000 * 109.47018 * 299.99905 * 3 2 1 29 29 H 1.09008 * 109.47504 * 60.00081 * 4 3 2 30 30 H 1.09000 * 109.47379 * 299.99890 * 4 3 2 31 31 H 1.09000 * 110.02886 * 61.64190 * 8 7 5 32 32 H 1.09005 * 109.96368 * 300.33047 * 8 7 5 33 33 H 1.09002 * 110.72057 * 263.78860 * 9 8 7 34 34 H 1.09003 * 110.71837 * 140.69433 * 9 8 7 35 35 H 1.08995 * 109.46842 * 53.54823 * 12 10 9 36 36 H 1.09001 * 109.46687 * 173.54709 * 12 10 9 37 37 H 1.09000 * 109.46837 * 300.00409 * 13 12 10 38 38 H 1.09005 * 109.46857 * 59.99834 * 13 12 10 39 39 H 0.97003 * 119.99792 * 359.97438 * 14 13 12 40 40 H 0.96995 * 120.00198 * 179.97438 * 18 17 15 41 41 H 1.09000 * 110.36462 * 37.07589 * 23 7 5 42 42 H 1.08996 * 110.46287 * 274.79669 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1485 2.5612 0.0013 6 8 3.4357 3.5425 0.0017 7 7 5.4889 2.7020 0.0014 8 6 6.4679 1.5990 0.0004 9 6 7.8714 2.2401 0.0269 10 6 7.6025 3.6512 0.6132 11 1 7.5521 3.6191 1.7016 12 6 8.6624 4.6506 0.1454 13 6 10.0194 4.2711 0.7415 14 7 11.0342 5.2283 0.2942 15 6 12.3337 5.0895 0.7028 16 1 12.6108 4.2741 1.3545 17 6 13.2954 5.9961 0.2785 18 7 12.9582 6.9891 -0.5170 19 14 15.0683 5.8064 0.8352 20 1 15.5909 4.4917 0.3839 21 1 15.8908 6.8946 0.2481 22 1 15.1327 5.8823 2.3169 23 6 6.2182 3.9833 0.0025 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8463 0.8899 28 1 1.6887 1.8464 -0.8900 29 1 3.8575 0.6434 -0.8892 30 1 3.8567 0.6438 0.8909 31 1 6.3519 0.9977 -0.9013 32 1 6.3280 0.9764 0.8842 33 1 8.2813 2.3128 -0.9805 34 1 8.5415 1.6747 0.6746 35 1 8.7251 4.6310 -0.9425 36 1 8.3879 5.6525 0.4756 37 1 9.9566 4.2907 1.8295 38 1 10.2939 3.2692 0.4114 39 1 10.7856 5.9601 -0.2921 40 1 13.6301 7.6229 -0.8132 41 1 5.6973 4.7157 0.6192 42 1 6.3325 4.3576 -1.0147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484502796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:45 Heat of formation + Delta-G solvation = -81.601101 kcal Electronic energy + Delta-G solvation = -20212.608094 eV Core-core repulsion = 16999.628535 eV Total energy + Delta-G solvation = -3212.979558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.30280 -38.40167 -37.67361 -35.15742 -33.12759 -32.06519 -30.80456 -29.59487 -27.71066 -26.74058 -24.52006 -23.33868 -22.79071 -21.45866 -20.15380 -19.27134 -17.66020 -17.13627 -16.72671 -16.27103 -16.15433 -15.48462 -15.04164 -14.69705 -14.61734 -14.20772 -13.71959 -13.47674 -13.31182 -13.07849 -12.81991 -12.62036 -12.26494 -12.18394 -11.79213 -11.65953 -11.54042 -11.30216 -11.06996 -10.81115 -10.66627 -10.49372 -10.34064 -10.10469 -10.04106 -10.00596 -9.68078 -8.86484 -8.82142 -6.91711 -5.75972 -3.04842 2.41163 2.62554 3.44147 3.48251 3.49482 3.49794 4.27210 4.48191 4.55679 4.60542 4.64689 4.79377 4.83423 4.98631 5.01325 5.07902 5.12000 5.27357 5.29913 5.38291 5.44408 5.46844 5.54448 5.60950 5.66251 5.79278 5.83837 5.89481 6.08267 6.10727 6.24255 6.35749 6.38693 6.74437 6.83445 6.88301 7.30635 7.69303 7.92911 8.43139 9.53809 10.12590 10.46699 11.46902 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.070013 B = 0.002455 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.831142 B =11401.040665 C =11669.220725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.135 4.135 5 C 0.531 3.469 6 O -0.546 6.546 7 N -0.617 5.617 8 C 0.098 3.902 9 C -0.128 4.128 10 C -0.094 4.094 11 H 0.085 0.915 12 C -0.116 4.116 13 C 0.155 3.845 14 N -0.735 5.735 15 C -0.240 4.240 16 H 0.069 0.931 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.109 3.891 24 H 0.086 0.914 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.017 0.983 38 H 0.020 0.980 39 H 0.383 0.617 40 H 0.256 0.744 41 H 0.078 0.922 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.482 -14.446 0.638 25.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.175 4.175 5 C 0.320 3.680 6 O -0.424 6.424 7 N -0.352 5.352 8 C -0.025 4.025 9 C -0.166 4.166 10 C -0.114 4.114 11 H 0.103 0.897 12 C -0.154 4.154 13 C 0.027 3.973 14 N -0.379 5.379 15 C -0.371 4.371 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.013 4.013 24 H 0.105 0.895 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.686 -14.160 0.710 25.909 hybrid contribution 0.827 0.348 0.082 0.901 sum -20.859 -13.811 0.792 25.030 Atomic orbital electron populations 1.22736 0.80551 1.02754 1.00258 1.87797 1.20110 1.28036 1.95583 1.22169 0.91905 0.84184 1.01836 1.21442 0.95289 0.95108 1.05661 1.20028 0.80716 0.91064 0.76173 1.90722 1.60097 1.41001 1.50591 1.48638 1.04796 1.08889 1.72827 1.22245 0.88835 0.89655 1.01731 1.22744 0.94736 0.96161 1.02938 1.22333 0.93379 0.95096 1.00547 0.89692 1.21669 0.94506 0.98171 1.01052 1.20621 0.87190 0.93349 0.96112 1.42370 1.04787 1.31751 1.58986 1.19186 0.84976 1.09084 1.23894 0.91253 1.24760 0.98223 0.97825 1.00321 1.69652 1.33264 1.16921 1.38428 0.86251 0.84808 0.76961 0.78063 1.21273 1.21679 1.21282 1.22361 0.91693 0.85731 1.01514 0.89511 0.93914 0.93924 0.92340 0.92339 0.88042 0.88034 0.91156 0.91162 0.90001 0.89507 0.91567 0.91502 0.96544 0.96256 0.78308 0.93461 0.90361 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.40 -3.75 10.70 -35.23 -0.38 -4.12 16 3 C 0.08 0.72 5.23 37.15 0.19 0.91 16 4 C -0.14 -1.18 5.26 -27.89 -0.15 -1.33 16 5 C 0.53 6.35 7.85 -10.99 -0.09 6.26 16 6 O -0.55 -8.49 16.24 5.55 0.09 -8.40 16 7 N -0.62 -6.86 3.34 -170.15 -0.57 -7.43 16 8 C 0.10 0.84 6.52 -2.81 -0.02 0.82 16 9 C -0.13 -1.28 5.58 -24.90 -0.14 -1.42 16 10 C -0.09 -1.11 3.07 -88.48 -0.27 -1.38 16 11 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 12 C -0.12 -1.75 4.84 -26.73 -0.13 -1.88 16 13 C 0.15 3.00 6.11 -4.05 -0.02 2.97 16 14 N -0.73 -18.64 5.60 -59.91 -0.34 -18.97 16 15 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.40 13.06 55.49 0.72 -27.67 16 19 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 C 0.11 1.31 6.38 -2.53 -0.02 1.29 16 24 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 28 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 29 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 34 H 0.09 0.82 8.13 -51.93 -0.42 0.40 16 35 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.02 0.37 7.51 -51.93 -0.39 -0.02 16 39 H 0.38 10.22 7.67 -40.82 -0.31 9.91 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 42 H 0.07 0.87 8.03 -51.93 -0.42 0.45 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -33.37 346.40 -7.45 -40.82 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.41 Total: 3.03 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 0.23 Total: 0.13 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.18 Total: -54.07 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.29 Total: -12.52 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.37 -7.45 -40.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484502796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.778 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds