Wall clock time and date at job start Mon Mar 30 2020 00:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00221 * 2 1 4 4 C 1.52995 * 109.46893 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47036 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00038 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00167 * 180.02562 * 5 4 3 8 8 C 1.47486 * 125.59413 * 0.02562 * 7 5 4 9 9 C 1.54323 * 107.03754 * 181.00840 * 8 7 5 10 10 C 1.55153 * 103.10236 * 22.24109 * 9 8 7 11 11 H 1.09002 * 111.00696 * 82.51784 * 10 9 8 12 12 C 1.53002 * 111.00503 * 206.33608 * 10 9 8 13 13 C 1.52999 * 109.47139 * 293.54399 * 12 10 9 14 14 N 1.46494 * 109.47241 * 180.02562 * 13 12 10 15 15 C 1.36935 * 120.00026 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00335 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00156 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00122 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00506 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47258 * 59.99629 * 19 17 15 21 21 H 1.48499 * 109.47556 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47136 * 300.00030 * 19 17 15 23 23 C 1.47428 * 125.64860 * 180.02562 * 7 5 4 24 24 H 1.08995 * 109.47127 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47398 * 300.00377 * 1 2 3 26 26 H 1.08999 * 109.46777 * 59.99645 * 1 2 3 27 27 H 1.08992 * 109.46763 * 59.99859 * 3 2 1 28 28 H 1.09000 * 109.47018 * 299.99905 * 3 2 1 29 29 H 1.09008 * 109.47504 * 60.00081 * 4 3 2 30 30 H 1.09000 * 109.47379 * 299.99890 * 4 3 2 31 31 H 1.09000 * 110.02886 * 61.64190 * 8 7 5 32 32 H 1.09005 * 109.96368 * 300.33047 * 8 7 5 33 33 H 1.09002 * 110.72057 * 263.78860 * 9 8 7 34 34 H 1.09003 * 110.71837 * 140.69433 * 9 8 7 35 35 H 1.08995 * 109.46842 * 53.54823 * 12 10 9 36 36 H 1.09001 * 109.46687 * 173.54709 * 12 10 9 37 37 H 1.09000 * 109.46837 * 300.00409 * 13 12 10 38 38 H 1.09005 * 109.46857 * 59.99834 * 13 12 10 39 39 H 0.97003 * 119.99792 * 359.97438 * 14 13 12 40 40 H 0.96995 * 120.00198 * 179.97438 * 18 17 15 41 41 H 1.09000 * 110.36462 * 37.07589 * 23 7 5 42 42 H 1.08996 * 110.46287 * 274.79669 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1485 2.5612 0.0013 6 8 3.4357 3.5425 0.0017 7 7 5.4889 2.7020 0.0014 8 6 6.4679 1.5990 0.0004 9 6 7.8714 2.2401 0.0269 10 6 7.6025 3.6512 0.6132 11 1 7.5521 3.6191 1.7016 12 6 8.6624 4.6506 0.1454 13 6 10.0194 4.2711 0.7415 14 7 11.0342 5.2283 0.2942 15 6 12.3337 5.0895 0.7028 16 1 12.6108 4.2741 1.3545 17 6 13.2954 5.9961 0.2785 18 7 12.9582 6.9891 -0.5170 19 14 15.0683 5.8064 0.8352 20 1 15.5909 4.4917 0.3839 21 1 15.8908 6.8946 0.2481 22 1 15.1327 5.8823 2.3169 23 6 6.2182 3.9833 0.0025 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8463 0.8899 28 1 1.6887 1.8464 -0.8900 29 1 3.8575 0.6434 -0.8892 30 1 3.8567 0.6438 0.8909 31 1 6.3519 0.9977 -0.9013 32 1 6.3280 0.9764 0.8842 33 1 8.2813 2.3128 -0.9805 34 1 8.5415 1.6747 0.6746 35 1 8.7251 4.6310 -0.9425 36 1 8.3879 5.6525 0.4756 37 1 9.9566 4.2907 1.8295 38 1 10.2939 3.2692 0.4114 39 1 10.7856 5.9601 -0.2921 40 1 13.6301 7.6229 -0.8132 41 1 5.6973 4.7157 0.6192 42 1 6.3325 4.3576 -1.0147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484502796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:45 Heat of formation + Delta-G solvation = -104.467151 kcal Electronic energy + Delta-G solvation = -20213.599640 eV Core-core repulsion = 16999.628535 eV Total energy + Delta-G solvation = -3213.971105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.21017 -39.22739 -38.52630 -36.81364 -34.58391 -33.10736 -32.26739 -30.58978 -28.97922 -27.46020 -25.91747 -24.65179 -23.60266 -22.95413 -21.22088 -20.14516 -19.12437 -18.44959 -17.55495 -17.12657 -16.96593 -16.68046 -16.22569 -15.83175 -15.55366 -15.35082 -15.25129 -15.05884 -14.37577 -14.17936 -13.82847 -13.66776 -13.26965 -13.06135 -12.84632 -12.83757 -12.73623 -12.44271 -12.31256 -12.22444 -12.16064 -11.94297 -11.62889 -11.54323 -11.47982 -11.03553 -10.89266 -10.69505 -9.71339 -8.98476 -7.94146 -5.23241 1.48254 1.51618 1.51877 1.57769 1.80212 2.57343 2.82770 3.39343 3.42637 3.63362 3.72394 3.81668 3.99526 4.08784 4.18927 4.32794 4.36192 4.45075 4.48008 4.51252 4.51730 4.62529 4.64084 4.77365 4.78424 4.80781 4.85156 4.86977 4.90372 4.99728 5.11160 5.22791 5.31569 5.39906 5.48037 5.50969 6.11664 6.28415 6.45236 7.03365 7.34061 8.11840 8.33396 9.29384 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.070013 B = 0.002455 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.831142 B =11401.040665 C =11669.220725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.078 3.922 4 C -0.125 4.125 5 C 0.527 3.473 6 O -0.591 6.591 7 N -0.618 5.618 8 C 0.099 3.901 9 C -0.126 4.126 10 C -0.084 4.084 11 H 0.089 0.911 12 C -0.103 4.103 13 C 0.154 3.846 14 N -0.751 5.751 15 C -0.246 4.246 16 H 0.078 0.922 17 C -0.080 4.080 18 N -0.971 5.971 19 Si 0.976 3.024 20 H -0.275 1.275 21 H -0.296 1.296 22 H -0.278 1.278 23 C 0.110 3.890 24 H 0.104 0.896 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.018 0.982 38 H 0.031 0.969 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.064 0.936 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.578 -16.890 1.203 27.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.001 3.999 4 C -0.164 4.164 5 C 0.317 3.683 6 O -0.472 6.472 7 N -0.351 5.351 8 C -0.022 4.022 9 C -0.164 4.164 10 C -0.104 4.104 11 H 0.107 0.893 12 C -0.141 4.141 13 C 0.028 3.972 14 N -0.394 5.394 15 C -0.378 4.378 16 H 0.096 0.904 17 C -0.272 4.272 18 N -0.622 5.622 19 Si 0.805 3.195 20 H -0.201 1.201 21 H -0.223 1.223 22 H -0.204 1.204 23 C -0.013 4.013 24 H 0.122 0.878 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.036 0.964 38 H 0.049 0.951 39 H 0.204 0.796 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.792 -16.669 1.297 27.467 hybrid contribution 0.784 1.078 -0.079 1.335 sum -21.007 -15.591 1.218 26.189 Atomic orbital electron populations 1.22947 0.79226 1.04110 1.00776 1.87766 1.21641 1.27766 1.95632 1.22095 0.92577 0.84237 1.01031 1.21408 0.94476 0.93115 1.07429 1.20606 0.80634 0.91817 0.75205 1.90702 1.61133 1.42691 1.52722 1.48725 1.05056 1.09172 1.72125 1.22423 0.86879 0.88936 1.03983 1.22749 0.96075 0.94837 1.02701 1.22163 0.92036 0.95474 1.00742 0.89255 1.21496 0.93375 0.98680 1.00565 1.20804 0.87760 0.92528 0.96156 1.42649 1.05283 1.32556 1.58884 1.19635 0.86269 1.08782 1.23105 0.90435 1.25629 1.02532 0.97940 1.01099 1.69819 1.34279 1.17961 1.40158 0.85175 0.79647 0.76930 0.77793 1.20143 1.22267 1.20390 1.22222 0.91761 0.86332 1.00964 0.87773 0.93419 0.93443 0.93222 0.93249 0.86137 0.86082 0.88996 0.88827 0.90451 0.88448 0.91881 0.92530 0.96441 0.95106 0.79614 0.94037 0.91730 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.05 10.70 -148.98 -1.59 -8.64 16 3 C 0.08 1.38 5.23 71.98 0.38 1.76 16 4 C -0.12 -1.90 5.26 29.85 0.16 -1.74 16 5 C 0.53 11.93 7.85 87.66 0.69 12.62 16 6 O -0.59 -18.49 16.24 -3.04 -0.05 -18.54 16 7 N -0.62 -12.61 3.34 -810.62 -2.71 -15.32 16 8 C 0.10 1.36 6.52 86.64 0.57 1.93 16 9 C -0.13 -2.19 5.58 31.78 0.18 -2.01 16 10 C -0.08 -1.88 3.07 -9.41 -0.03 -1.91 16 11 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 12 C -0.10 -3.06 4.84 30.59 0.15 -2.92 16 13 C 0.15 5.81 6.11 86.38 0.53 6.34 16 14 N -0.75 -38.17 5.60 -343.46 -1.92 -40.09 16 15 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 16 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 17 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 18 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 19 Si 0.98 45.99 29.55 68.60 2.03 48.02 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 C 0.11 2.57 6.38 86.85 0.55 3.13 16 24 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 28 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 29 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.08 1.44 8.01 -2.39 -0.02 1.43 16 34 H 0.10 1.53 8.13 -2.39 -0.02 1.51 16 35 H 0.06 1.92 8.11 -2.39 -0.02 1.90 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.03 1.12 7.51 -2.38 -0.02 1.10 16 39 H 0.37 20.23 7.67 -92.71 -0.71 19.52 16 40 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 41 H 0.06 1.68 8.04 -2.39 -0.02 1.66 16 42 H 0.07 1.61 8.03 -2.39 -0.02 1.60 16 Total: -1.00 -71.91 346.40 2.03 -69.88 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.27 Total: 22.64 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.72 Total: 1.67 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -4.35 Total: -115.03 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -1.64 Total: -27.18 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -71.91 2.03 -69.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484502796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.585 kcal (2) G-P(sol) polarization free energy of solvation -71.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds