Wall clock time and date at job start Mon Mar 30 2020 00:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42890 * 114.00032 * 2 1 4 4 C 1.53007 * 109.47028 * 180.02562 * 3 2 1 5 5 C 1.50705 * 109.47017 * 180.02562 * 4 3 2 6 6 O 1.21286 * 119.99980 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99749 * 180.02562 * 5 4 3 8 8 C 1.47018 * 125.64993 * 359.97196 * 7 5 4 9 9 C 1.54325 * 107.40412 * 178.90064 * 8 7 5 10 10 C 1.55405 * 102.82616 * 337.97548 * 9 8 7 11 11 H 1.09000 * 110.89538 * 277.26533 * 10 9 8 12 12 C 1.52998 * 111.06990 * 153.48436 * 10 9 8 13 13 C 1.52995 * 109.47225 * 72.66748 * 12 10 9 14 14 N 1.46500 * 109.47635 * 180.02562 * 13 12 10 15 15 C 1.36935 * 120.00117 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00393 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99865 * 179.97438 * 15 14 13 18 18 N 1.31613 * 119.99700 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99749 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46909 * 90.00619 * 19 17 15 21 21 H 1.48502 * 109.46822 * 210.00222 * 19 17 15 22 22 H 1.48497 * 109.47261 * 330.00374 * 19 17 15 23 23 C 1.47426 * 125.64489 * 180.02562 * 7 5 4 24 24 H 1.08998 * 109.46823 * 299.99749 * 1 2 3 25 25 H 1.08999 * 109.47019 * 60.00356 * 1 2 3 26 26 H 1.08998 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47351 * 60.00207 * 3 2 1 28 28 H 1.09004 * 109.47056 * 299.99721 * 3 2 1 29 29 H 1.08998 * 109.46906 * 59.99910 * 4 3 2 30 30 H 1.08995 * 109.47158 * 299.99728 * 4 3 2 31 31 H 1.09002 * 109.88241 * 298.39592 * 8 7 5 32 32 H 1.09000 * 109.88049 * 59.40721 * 8 7 5 33 33 H 1.09000 * 110.72188 * 96.24097 * 9 8 7 34 34 H 1.09002 * 110.72265 * 219.52294 * 9 8 7 35 35 H 1.09007 * 109.46861 * 192.66193 * 12 10 9 36 36 H 1.09000 * 109.47191 * 312.66307 * 12 10 9 37 37 H 1.09006 * 109.47117 * 300.00199 * 13 12 10 38 38 H 1.09000 * 109.47395 * 59.99685 * 13 12 10 39 39 H 0.97000 * 119.99823 * 359.97438 * 14 13 12 40 40 H 0.97002 * 119.99750 * 179.97438 * 18 17 15 41 41 H 1.08999 * 110.36956 * 322.93474 * 23 7 5 42 42 H 1.09003 * 110.36599 * 85.25378 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1485 2.5613 0.0000 6 8 3.4356 3.5425 0.0004 7 7 5.4889 2.7021 -0.0009 8 6 6.4659 1.6035 -0.0020 9 6 7.8728 2.2370 -0.0311 10 6 7.6019 3.6523 -0.6129 11 1 7.5501 3.6218 -1.7013 12 6 8.6620 4.6515 -0.1451 13 6 9.9820 4.3691 -0.8652 14 7 10.9972 5.3254 -0.4169 15 6 12.2662 5.2668 -0.9281 16 1 12.5188 4.5153 -1.6615 17 6 13.2281 6.1733 -0.5037 18 7 14.4479 6.1166 -0.9947 19 14 12.7910 7.4735 0.7643 20 1 13.0479 6.9421 2.1269 21 1 13.6227 8.6831 0.5398 22 1 11.3551 7.8289 0.6342 23 6 6.2181 3.9833 0.0001 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8567 0.6437 -0.8908 30 1 3.8575 0.6435 0.8891 31 1 6.3486 1.0022 0.8996 32 1 6.3217 0.9801 -0.8845 33 1 8.2852 2.3069 0.9755 34 1 8.5376 1.6702 -0.6830 35 1 8.3324 5.6649 -0.3747 36 1 8.8062 4.5512 0.9306 37 1 10.3115 3.3557 -0.6358 38 1 9.8378 4.4694 -1.9410 39 1 10.7703 6.0006 0.2415 40 1 15.1199 6.7503 -0.6984 41 1 5.6967 4.7172 -0.6145 42 1 6.3331 4.3536 1.0188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484502797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:48 Heat of formation + Delta-G solvation = -77.613117 kcal Electronic energy + Delta-G solvation = -20261.475318 eV Core-core repulsion = 17048.668692 eV Total energy + Delta-G solvation = -3212.806626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.37732 -38.45115 -37.72673 -35.36500 -33.18625 -32.10411 -31.07767 -29.75812 -27.98710 -26.83796 -24.59021 -23.20384 -22.83744 -21.32590 -20.32290 -19.36084 -17.72257 -17.57962 -16.80630 -16.32600 -16.19862 -15.54008 -15.07370 -14.69525 -14.61986 -14.30777 -14.02663 -13.56245 -13.30273 -13.05453 -12.82269 -12.72333 -12.30317 -12.29161 -11.84444 -11.80242 -11.63125 -11.53307 -11.29619 -10.89408 -10.72664 -10.53793 -10.43225 -10.14317 -10.08994 -10.06972 -9.59781 -8.90117 -8.87893 -7.23752 -5.77451 -3.12977 2.35643 2.57526 3.37213 3.40017 3.45042 3.46327 4.21806 4.41156 4.50378 4.58703 4.59851 4.73172 4.74537 4.95902 4.98061 5.00650 5.07943 5.20883 5.27121 5.28740 5.38784 5.42926 5.46365 5.49291 5.57174 5.68274 5.72957 5.80131 5.93404 5.98211 6.07887 6.12178 6.27673 6.71255 6.71599 6.75429 7.25067 7.87284 7.98921 8.41690 9.20966 9.93456 10.13168 11.40953 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.058649 B = 0.002608 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.303481 B =10735.116678 C =11024.339162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.135 4.135 5 C 0.532 3.468 6 O -0.546 6.546 7 N -0.617 5.617 8 C 0.098 3.902 9 C -0.128 4.128 10 C -0.094 4.094 11 H 0.087 0.913 12 C -0.120 4.120 13 C 0.159 3.841 14 N -0.758 5.758 15 C -0.245 4.245 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.886 3.114 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C 0.109 3.891 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.025 0.975 39 H 0.361 0.639 40 H 0.259 0.741 41 H 0.079 0.921 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.135 -12.711 3.046 28.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.175 4.175 5 C 0.321 3.679 6 O -0.424 6.424 7 N -0.351 5.351 8 C -0.025 4.025 9 C -0.166 4.166 10 C -0.114 4.114 11 H 0.106 0.894 12 C -0.158 4.158 13 C 0.032 3.968 14 N -0.404 5.404 15 C -0.375 4.375 16 H 0.108 0.892 17 C -0.193 4.193 18 N -0.582 5.582 19 Si 0.716 3.284 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.013 4.013 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.294 -12.448 2.909 28.341 hybrid contribution -0.259 1.149 0.891 1.477 sum -25.553 -11.299 3.800 28.197 Atomic orbital electron populations 1.22740 0.80523 1.02782 1.00257 1.87797 1.20130 1.27995 1.95581 1.22168 0.91881 0.84221 1.01829 1.21445 0.95319 0.95046 1.05698 1.20036 0.80666 0.91096 0.76121 1.90724 1.60078 1.41016 1.50541 1.48510 1.04825 1.08864 1.72905 1.22149 0.88857 0.89710 1.01812 1.22803 0.94791 0.96090 1.02874 1.22375 0.93245 0.94999 1.00793 0.89446 1.21720 0.94886 0.98423 1.00778 1.20604 0.86719 0.93320 0.96202 1.42728 1.09155 1.37196 1.51287 1.19065 0.85039 1.13735 1.19616 0.89241 1.24694 0.95561 0.99166 0.99892 1.69703 1.02543 1.39293 1.46697 0.86523 0.77481 0.82216 0.82166 1.21078 1.21723 1.20329 1.22366 0.91679 0.85873 1.01413 0.93927 0.93898 0.89487 0.92360 0.92333 0.87973 0.88034 0.91220 0.91135 0.90043 0.89309 0.91545 0.91586 0.95416 0.95673 0.80700 0.93064 0.90301 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.40 -3.65 10.70 -35.23 -0.38 -4.02 16 3 C 0.08 0.69 5.23 37.16 0.19 0.89 16 4 C -0.14 -1.13 5.26 -27.88 -0.15 -1.28 16 5 C 0.53 6.10 7.85 -10.98 -0.09 6.01 16 6 O -0.55 -8.23 16.24 5.55 0.09 -8.14 16 7 N -0.62 -6.50 3.33 -170.51 -0.57 -7.07 16 8 C 0.10 0.78 6.48 -3.07 -0.02 0.76 16 9 C -0.13 -1.18 5.93 -24.76 -0.15 -1.33 16 10 C -0.09 -1.04 3.00 -88.33 -0.27 -1.31 16 11 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 12 C -0.12 -1.66 4.84 -26.73 -0.13 -1.79 16 13 C 0.16 2.91 6.16 -4.04 -0.02 2.88 16 14 N -0.76 -17.91 5.41 -59.91 -0.32 -18.23 16 15 C -0.24 -6.95 10.47 -15.06 -0.16 -7.10 16 16 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 17 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 18 N -0.93 -29.41 13.97 55.49 0.78 -28.64 16 19 Si 0.89 22.13 27.74 -169.99 -4.71 17.41 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 23 C 0.11 1.22 6.38 -2.52 -0.02 1.21 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.90 7.98 -51.93 -0.41 0.48 16 37 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.36 8.30 5.53 -40.82 -0.23 8.07 16 40 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 41 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 42 H 0.07 0.79 8.04 -51.93 -0.42 0.38 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -34.19 343.61 -7.09 -41.28 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.37 Total: 1.98 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 0.22 Total: 0.24 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.12 Total: -53.93 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.29 Total: -12.16 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.19 -7.09 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484502797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.331 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds