Wall clock time and date at job start Mon Mar 30 2020 00:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00505 * 2 1 4 4 C 1.52995 * 109.47882 * 180.02562 * 3 2 1 5 5 C 1.52990 * 109.47353 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47398 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99488 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00290 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 5 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 H 1.09007 * 112.85179 * 314.66356 * 10 9 8 12 12 C 1.53774 * 113.61706 * 85.86090 * 10 9 8 13 13 C 1.53950 * 87.02260 * 139.95506 * 12 10 9 14 14 H 1.09000 * 113.61615 * 89.20264 * 13 12 10 15 15 N 1.46502 * 113.66845 * 220.06927 * 13 12 10 16 16 C 1.36941 * 120.00114 * 252.55758 * 15 13 12 17 17 H 1.07991 * 119.99614 * 359.97438 * 16 15 13 18 18 C 1.38813 * 119.99984 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99714 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99966 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46916 * 60.00103 * 20 18 16 22 22 H 1.48500 * 109.47109 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47083 * 299.99960 * 20 18 16 24 24 C 1.53780 * 113.61549 * 183.47005 * 10 9 8 25 25 H 1.09002 * 109.47303 * 60.00498 * 1 2 3 26 26 H 1.08998 * 109.47173 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47464 * 299.99952 * 1 2 3 28 28 H 1.08999 * 109.46701 * 59.99413 * 3 2 1 29 29 H 1.09003 * 109.46755 * 300.00660 * 3 2 1 30 30 H 1.08998 * 109.47142 * 59.99509 * 4 3 2 31 31 H 1.09011 * 109.46657 * 300.00067 * 4 3 2 32 32 H 1.08998 * 109.47508 * 59.99597 * 5 4 3 33 33 H 1.09002 * 109.47337 * 299.99883 * 5 4 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 35 35 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 36 36 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 37 37 H 1.09008 * 113.61525 * 254.53156 * 12 10 9 38 38 H 1.09003 * 113.61877 * 25.43315 * 12 10 9 39 39 H 0.97000 * 119.99958 * 72.55201 * 15 13 12 40 40 H 0.97007 * 119.99753 * 179.97438 * 19 18 16 41 41 H 1.08996 * 113.61539 * 334.56338 * 24 10 9 42 42 H 1.09005 * 113.61543 * 105.38288 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1577 2.5823 0.0000 6 6 5.6600 2.4634 0.0000 7 8 6.1816 1.3684 0.0000 8 7 6.4240 3.5737 0.0010 9 6 7.8844 3.4580 -0.0051 10 6 8.5067 4.8557 -0.0094 11 1 8.0307 5.5288 -0.7226 12 6 8.6704 5.4615 1.3944 13 6 10.0311 5.9996 0.9160 14 1 9.9735 6.9864 0.4568 15 7 11.0895 5.9023 1.9243 16 6 11.5430 7.0317 2.5521 17 1 11.1207 7.9941 2.3036 18 6 12.5454 6.9395 3.5079 19 7 13.0597 5.7664 3.8110 20 14 13.1645 8.4801 4.3637 21 1 12.0411 9.1316 5.0838 22 1 14.2286 8.1143 5.3328 23 1 13.7165 9.4191 3.3543 24 6 10.0417 4.8463 -0.1013 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6886 1.8463 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8567 0.6439 -0.8908 31 1 3.8574 0.6435 0.8892 32 1 3.8364 3.1227 0.8904 33 1 3.8358 3.1238 -0.8895 34 1 6.0068 4.4494 0.0014 35 1 8.2098 2.9182 0.8842 36 1 8.2022 2.9161 -0.8957 37 1 7.9453 6.2437 1.6198 38 1 8.7494 4.7157 2.1854 39 1 11.4690 5.0379 2.1473 40 1 13.7605 5.7020 4.4787 41 1 10.4963 3.9320 0.2799 42 1 10.4222 5.1311 -1.0823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488715198.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:38 Heat of formation + Delta-G solvation = -93.887732 kcal Electronic energy + Delta-G solvation = -19828.536500 eV Core-core repulsion = 16615.024154 eV Total energy + Delta-G solvation = -3213.512347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.91969 -39.80729 -38.82784 -36.05573 -34.97923 -34.59706 -32.19225 -29.62792 -28.03541 -26.49407 -26.45025 -25.61930 -23.02110 -22.31114 -21.36903 -20.41644 -19.04717 -18.17804 -17.33186 -17.28898 -17.04835 -16.52962 -16.43827 -16.04845 -15.81471 -15.37128 -15.18800 -14.87411 -14.43882 -14.19624 -13.44237 -13.23201 -13.08959 -13.01399 -12.91428 -12.89245 -12.61453 -12.59287 -12.23915 -12.07494 -11.95903 -11.87080 -11.58180 -11.54290 -11.09888 -10.85796 -10.75144 -10.59076 -10.03964 -8.97210 -7.93889 -5.22431 1.47533 1.50750 1.56864 1.68231 2.18830 2.57396 2.93354 3.37799 3.68957 3.77248 3.79639 3.94399 4.00907 4.18179 4.26778 4.34219 4.39503 4.45742 4.49568 4.53568 4.55732 4.57500 4.61350 4.72456 4.81545 4.87940 4.98618 5.00136 5.06820 5.13737 5.23454 5.26142 5.38933 5.47082 5.54583 5.74967 6.27910 6.28134 6.62518 7.32137 7.33430 8.12218 8.33759 9.29429 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.041190 B = 0.002352 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.611551 B =11900.590023 C =12110.017358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.062 3.938 4 C -0.104 4.104 5 C -0.125 4.125 6 C 0.503 3.497 7 O -0.596 6.596 8 N -0.714 5.714 9 C 0.137 3.863 10 C -0.093 4.093 11 H 0.124 0.876 12 C -0.153 4.153 13 C 0.142 3.858 14 H 0.082 0.918 15 N -0.731 5.731 16 C -0.243 4.243 17 H 0.080 0.920 18 C -0.082 4.082 19 N -0.973 5.973 20 Si 0.975 3.025 21 H -0.277 1.277 22 H -0.299 1.299 23 H -0.276 1.276 24 C -0.139 4.139 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.418 0.582 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.063 0.937 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.822 -3.250 -11.408 28.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.014 4.014 4 C -0.142 4.142 5 C -0.165 4.165 6 C 0.291 3.709 7 O -0.477 6.477 8 N -0.366 5.366 9 C 0.012 3.988 10 C -0.112 4.112 11 H 0.142 0.858 12 C -0.193 4.193 13 C 0.033 3.967 14 H 0.100 0.900 15 N -0.368 5.368 16 C -0.375 4.375 17 H 0.098 0.902 18 C -0.273 4.273 19 N -0.624 5.624 20 Si 0.804 3.196 21 H -0.203 1.203 22 H -0.225 1.225 23 H -0.202 1.202 24 C -0.178 4.178 25 H 0.072 0.928 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.256 0.744 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.294 -3.971 -11.353 28.008 hybrid contribution 0.728 0.578 0.935 1.318 sum -24.566 -3.393 -10.418 26.899 Atomic orbital electron populations 1.22916 0.79358 1.03667 1.01082 1.87850 1.21654 1.29460 1.95681 1.22609 0.92557 0.84335 1.01898 1.21166 0.93721 0.96567 1.02733 1.21545 0.88589 0.98846 1.07480 1.21382 0.91224 0.83584 0.74725 1.90712 1.76438 1.28757 1.51775 1.45926 1.06535 1.09668 1.74479 1.21182 0.79860 0.96967 1.00768 1.22461 0.95306 0.95255 0.98187 0.85778 1.23736 0.99650 1.00059 0.95878 1.22009 0.87884 0.97188 0.89624 0.89977 1.42643 1.42799 1.06368 1.44992 1.19715 1.14162 0.88758 1.14884 0.90182 1.25628 1.00449 0.99658 1.01596 1.69829 1.31132 1.24374 1.37018 0.85186 0.77484 0.78962 0.77979 1.20290 1.22516 1.20228 1.23336 0.95403 0.99106 1.00002 0.92777 0.89098 0.92987 0.91579 0.91176 0.92419 0.92934 0.85958 0.85281 0.74439 0.94039 0.91997 0.91082 0.92874 0.79748 0.94146 0.91793 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.52 16 2 O -0.43 -7.89 10.70 -148.98 -1.59 -9.48 16 3 C 0.06 0.82 5.94 71.98 0.43 1.25 16 4 C -0.10 -1.82 4.87 30.59 0.15 -1.68 16 5 C -0.13 -1.56 5.70 29.85 0.17 -1.39 16 6 C 0.50 11.23 7.83 87.66 0.69 11.92 16 7 O -0.60 -19.92 15.98 -3.04 -0.05 -19.97 16 8 N -0.71 -13.57 5.56 -463.07 -2.57 -16.14 16 9 C 0.14 3.37 5.50 86.38 0.47 3.85 16 10 C -0.09 -2.19 3.75 -10.27 -0.04 -2.23 16 11 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 12 C -0.15 -4.71 7.45 31.18 0.23 -4.48 16 13 C 0.14 5.30 4.48 45.58 0.20 5.51 16 14 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 15 N -0.73 -36.82 5.40 -320.17 -1.73 -38.55 16 16 C -0.24 -13.44 9.97 84.03 0.84 -12.60 16 17 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 18 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 19 N -0.97 -60.42 13.06 21.65 0.28 -60.14 16 20 Si 0.98 46.09 29.55 68.60 2.03 48.11 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 C -0.14 -4.22 7.40 31.12 0.23 -3.99 16 25 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 31 H 0.05 1.19 8.10 -2.38 -0.02 1.17 16 32 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.42 4.89 8.47 -92.71 -0.79 4.11 16 35 H 0.04 1.27 7.88 -2.38 -0.02 1.25 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.05 1.93 7.92 -2.39 -0.02 1.91 16 39 H 0.37 20.44 7.92 -92.71 -0.73 19.71 16 40 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 41 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 42 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -75.71 351.23 0.93 -74.78 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: -0.52 Total: 27.94 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 5.09 Total: -6.55 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -4.02 Total: -114.83 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -1.64 Total: -29.45 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -75.71 0.93 -74.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488715198.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.111 kcal (2) G-P(sol) polarization free energy of solvation -75.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds