Wall clock time and date at job start Mon Mar 30 2020 01:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47075 * 2 1 4 4 C 1.50700 * 109.47668 * 239.99596 * 2 1 3 5 5 H 1.07997 * 120.00161 * 240.00104 * 4 2 1 6 6 C 1.37874 * 119.99593 * 60.00078 * 4 2 1 7 7 N 1.31518 * 120.00541 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99881 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47530 * 59.99483 * 8 6 4 10 10 H 1.48501 * 109.47378 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46757 * 299.99573 * 8 6 4 12 12 C 1.52998 * 109.47034 * 119.99565 * 2 1 3 13 13 N 1.46898 * 109.47114 * 300.00177 * 12 2 1 14 14 C 1.46904 * 111.00126 * 180.02562 * 13 12 2 15 15 C 1.52998 * 109.47484 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47436 * 180.02562 * 15 14 13 17 17 N 1.46895 * 109.61508 * 59.77332 * 16 15 14 18 18 C 1.53175 * 109.54337 * 179.97438 * 16 15 14 19 19 C 1.53092 * 109.16344 * 176.84735 * 18 16 15 20 20 O 1.42905 * 109.41215 * 302.38824 * 19 18 16 21 21 C 1.42905 * 114.09831 * 61.16158 * 20 19 18 22 22 C 1.53098 * 109.41155 * 298.83847 * 21 20 19 23 23 H 1.08997 * 109.47603 * 300.00345 * 1 2 3 24 24 H 1.09002 * 109.46803 * 60.00360 * 1 2 3 25 25 H 1.09001 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47286 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47011 * 299.99513 * 3 2 1 28 28 H 1.08997 * 109.47187 * 59.99400 * 3 2 1 29 29 H 0.96993 * 120.00032 * 180.02562 * 7 6 4 30 30 H 1.09007 * 109.47468 * 180.02562 * 12 2 1 31 31 H 1.09002 * 109.47343 * 60.00161 * 12 2 1 32 32 H 1.00901 * 111.00081 * 303.95401 * 13 12 2 33 33 H 1.08997 * 109.47303 * 59.99857 * 14 13 12 34 34 H 1.09007 * 109.46783 * 299.99686 * 14 13 12 35 35 H 1.09005 * 109.47096 * 59.99176 * 15 14 13 36 36 H 1.09007 * 109.46545 * 300.00023 * 15 14 13 37 37 H 1.00904 * 110.99767 * 180.22161 * 17 16 15 38 38 H 1.00900 * 111.00054 * 304.17577 * 17 16 15 39 39 H 1.09004 * 109.52714 * 56.93754 * 18 16 15 40 40 H 1.08998 * 109.52443 * 296.75019 * 18 16 15 41 41 H 1.08997 * 109.48111 * 182.40965 * 19 18 16 42 42 H 1.08999 * 109.49220 * 62.37875 * 19 18 16 43 43 H 1.09000 * 109.47932 * 58.81878 * 21 20 19 44 44 H 1.08993 * 109.48024 * 178.86013 * 21 20 19 45 45 H 1.08996 * 109.52270 * 297.70307 * 22 21 20 46 46 H 1.08998 * 109.51931 * 177.51229 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4826 7 7 0.9428 0.8295 -2.6035 8 14 2.3216 -1.1205 -4.0078 9 1 1.8263 -2.5204 -4.0076 10 1 1.8273 -0.4201 -5.2204 11 1 3.8066 -1.1209 -4.0079 12 6 2.0399 -0.7211 1.2493 13 7 1.5502 -0.0286 2.4486 14 6 2.0217 -0.6943 3.6704 15 6 1.4921 0.0536 4.8956 16 6 1.9837 -0.6393 6.1680 17 7 3.4525 -0.6440 6.1909 18 6 1.4548 0.1085 7.3957 19 6 1.8857 -0.6362 8.6620 20 8 1.3974 -1.9784 8.6129 21 6 1.8960 -2.7408 7.5119 22 6 1.4656 -2.0805 6.1994 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 0.7083 1.1606 -3.4845 30 1 3.1300 -0.7208 1.2496 31 1 1.6766 -1.7488 1.2494 32 1 1.8196 0.9437 2.4401 33 1 3.1116 -0.6937 3.6870 34 1 1.6586 -1.7219 3.6875 35 1 0.4022 0.0527 4.8787 36 1 1.8549 1.0814 4.8787 37 1 3.7996 -1.1002 7.0213 38 1 3.8257 -1.0752 5.3586 39 1 0.3667 0.1553 7.3530 40 1 1.8634 1.1189 7.4107 41 1 1.4760 -0.1322 9.5373 42 1 2.9738 -0.6473 8.7250 43 1 2.9843 -2.7793 7.5596 44 1 1.4938 -3.7527 7.5587 45 1 0.3777 -2.0780 6.1325 46 1 1.8819 -2.6356 5.3588 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575297607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:28 Heat of formation + Delta-G solvation = -61.275199 kcal Electronic energy + Delta-G solvation = -21778.844453 eV Core-core repulsion = 18702.579387 eV Total energy + Delta-G solvation = -3076.265067 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.26008 -37.26037 -36.12212 -33.75908 -31.45618 -31.15734 -29.98408 -28.81823 -25.55062 -25.23826 -24.92119 -23.91535 -22.93872 -21.34249 -19.16568 -18.39355 -16.90571 -16.28222 -15.98157 -15.78755 -15.52303 -15.15173 -14.74846 -14.40125 -14.30067 -13.80569 -13.29365 -12.89846 -12.57883 -12.53518 -12.37058 -12.03442 -11.73774 -11.65685 -11.56909 -11.27780 -11.00826 -10.96165 -10.67874 -10.65824 -10.55998 -10.41601 -10.14877 -10.04801 -9.70911 -9.36879 -9.04207 -8.87897 -8.61971 -8.28040 -7.68162 -5.90336 -4.00959 3.32786 3.37663 3.40094 3.60002 4.25514 4.39842 4.47954 4.54088 4.61764 4.72633 4.88520 4.99005 5.12354 5.31042 5.32941 5.34885 5.40002 5.45908 5.63732 5.67254 5.79989 5.84806 5.89168 5.97883 6.21841 6.29937 6.36484 6.44176 6.73048 6.90573 6.90801 6.97910 7.09385 7.18225 7.22042 7.39532 7.48600 7.75070 7.76948 7.84430 7.99749 8.22587 8.35772 8.56844 9.00380 9.63949 11.10160 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.042643 B = 0.003260 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.453668 B = 8586.658627 C = 8787.916120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.069 3.931 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.076 3.924 13 N -0.686 5.686 14 C 0.057 3.943 15 C -0.102 4.102 16 C 0.122 3.878 17 N -0.840 5.840 18 C -0.141 4.141 19 C 0.058 3.942 20 O -0.384 6.384 21 C 0.059 3.941 22 C -0.188 4.188 23 H 0.020 0.980 24 H 0.074 0.926 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.083 0.917 28 H 0.011 0.989 29 H 0.259 0.741 30 H 0.012 0.988 31 H 0.054 0.946 32 H 0.337 0.663 33 H 0.022 0.978 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.333 0.667 38 H 0.344 0.656 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.052 0.948 43 H 0.045 0.955 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.352 -2.884 19.579 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.547 4.547 5 H 0.069 0.931 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.205 1.205 12 C -0.052 4.052 13 N -0.318 5.318 14 C -0.073 4.073 15 C -0.141 4.141 16 C 0.028 3.972 17 N -0.372 5.372 18 C -0.179 4.179 19 C -0.019 4.019 20 O -0.303 6.303 21 C -0.018 4.018 22 C -0.227 4.227 23 H 0.039 0.961 24 H 0.092 0.908 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.102 0.898 28 H 0.030 0.970 29 H 0.069 0.931 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.147 0.853 38 H 0.159 0.841 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.112 0.888 45 H 0.098 0.902 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.484 -2.367 19.561 19.760 hybrid contribution 1.450 -1.252 -1.183 2.251 sum 2.934 -3.619 18.378 18.960 Atomic orbital electron populations 1.21634 0.97423 0.98509 1.00069 1.18085 0.93180 0.91975 0.89945 1.21830 0.97676 0.99174 1.00285 1.21081 1.31165 1.11872 0.90558 0.93111 1.24885 0.95026 0.94972 0.98670 1.69823 1.36715 1.22817 1.23012 0.86722 0.79094 0.79841 0.82656 1.20408 1.21343 1.20476 1.22137 0.95383 0.97713 0.90013 1.60604 1.63576 1.06405 1.01205 1.21976 0.96433 0.98461 0.90465 1.21583 1.01190 0.99551 0.91726 1.20784 0.87581 0.93081 0.95723 1.59016 1.06734 1.63812 1.07650 1.22217 1.01656 1.00157 0.93905 1.22620 0.98383 0.82662 0.98233 1.87938 1.71047 1.23869 1.47431 1.22589 0.97730 0.95410 0.86021 1.23051 1.03483 0.98038 0.98140 0.96112 0.90757 0.96396 0.96262 0.89839 0.97030 0.93127 0.97018 0.92788 0.84400 0.95969 0.91863 0.90736 0.91321 0.85265 0.84071 0.90589 0.90005 0.88894 0.92983 0.93671 0.88844 0.90182 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 8.09 37.16 0.30 -2.62 16 2 C 0.07 1.67 0.57 -155.66 -0.09 1.59 16 3 C -0.13 -3.14 7.92 37.16 0.29 -2.85 16 4 C -0.51 -13.79 8.01 -34.44 -0.28 -14.06 16 5 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 7 N -0.88 -24.66 9.35 55.43 0.52 -24.14 16 8 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.08 1.60 4.59 -3.83 -0.02 1.58 16 13 N -0.69 -12.19 5.71 -113.77 -0.65 -12.84 16 14 C 0.06 0.80 5.01 -3.82 -0.02 0.78 16 15 C -0.10 -1.23 4.73 -26.73 -0.13 -1.36 16 16 C 0.12 1.21 0.72 -131.42 -0.09 1.12 16 17 N -0.84 -7.98 8.81 0.89 0.01 -7.97 16 18 C -0.14 -1.31 5.12 -26.59 -0.14 -1.44 16 19 C 0.06 0.50 6.58 37.20 0.24 0.74 16 20 O -0.38 -4.01 10.77 -35.23 -0.38 -4.39 16 21 C 0.06 0.53 6.58 37.21 0.24 0.77 16 22 C -0.19 -1.81 4.67 -26.59 -0.12 -1.93 16 23 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 24 H 0.07 2.00 6.07 -51.93 -0.32 1.68 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 28 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.01 0.25 8.14 -51.92 -0.42 -0.18 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.34 6.01 6.77 -39.29 -0.27 5.74 16 33 H 0.02 0.31 6.57 -51.93 -0.34 -0.03 16 34 H 0.06 0.90 6.52 -51.93 -0.34 0.56 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.33 2.75 5.69 -39.29 -0.22 2.53 16 38 H 0.34 3.35 7.03 -39.29 -0.28 3.08 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.41 6.82 -51.93 -0.35 0.06 16 43 H 0.05 0.35 6.81 -51.93 -0.35 0.00 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.08 0.75 6.63 -51.93 -0.34 0.41 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -27.90 338.00 -8.38 -36.28 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -8.06 Total: 7.80 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 0.11 Total: -16.00 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.12 Total: -44.95 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.38 Total: -4.39 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.90 -8.38 -36.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575297607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.996 kcal (2) G-P(sol) polarization free energy of solvation -27.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds