Wall clock time and date at job start Mon Mar 30 2020 00:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 119.99898 * 2 1 4 4 C 1.34772 * 119.99800 * 179.97438 * 2 1 3 5 5 O 1.21278 * 120.00318 * 0.02562 * 4 2 1 6 6 C 1.50708 * 119.99746 * 179.97438 * 4 2 1 7 7 H 1.08994 * 110.62455 * 56.89966 * 6 4 2 8 8 C 1.55138 * 110.70514 * 293.60209 * 6 4 2 9 9 C 1.54911 * 101.65002 * 205.96509 * 8 6 4 10 10 N 1.47845 * 104.79694 * 37.07063 * 9 8 6 11 11 C 1.46904 * 110.99468 * 213.63615 * 10 9 8 12 12 C 1.52998 * 109.47264 * 290.84180 * 11 10 9 13 13 O 1.42896 * 109.47121 * 65.00078 * 12 11 10 14 14 C 1.42897 * 113.99832 * 179.97438 * 13 12 11 15 15 C 1.50708 * 109.47055 * 180.02562 * 14 13 12 16 16 H 1.07991 * 119.99789 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00008 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00089 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 C 1.47437 * 108.56521 * 335.90070 * 10 9 8 24 24 H 1.09006 * 109.47404 * 270.00240 * 1 2 3 25 25 H 1.08998 * 109.47234 * 30.00047 * 1 2 3 26 26 H 1.09004 * 109.47207 * 150.00043 * 1 2 3 27 27 H 1.08996 * 109.47298 * 269.99870 * 3 2 1 28 28 H 1.09000 * 109.47589 * 30.00023 * 3 2 1 29 29 H 1.09001 * 109.47201 * 149.99940 * 3 2 1 30 30 H 1.08998 * 110.99413 * 324.05233 * 8 6 4 31 31 H 1.09000 * 110.99031 * 87.83429 * 8 6 4 32 32 H 1.09002 * 110.36895 * 278.23874 * 9 8 6 33 33 H 1.09005 * 110.37487 * 155.90193 * 9 8 6 34 34 H 1.09005 * 109.46736 * 170.84547 * 11 10 9 35 35 H 1.08993 * 109.47459 * 50.84722 * 11 10 9 36 36 H 1.09001 * 109.46964 * 305.00009 * 12 11 10 37 37 H 1.08995 * 109.47202 * 185.00633 * 12 11 10 38 38 H 1.08994 * 109.47709 * 60.00486 * 14 13 12 39 39 H 1.09000 * 109.47443 * 300.00391 * 14 13 12 40 40 H 0.96997 * 119.99848 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.88188 * 120.40077 * 23 10 9 42 42 H 1.08996 * 109.89263 * 241.58397 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5324 -2.2175 0.0005 6 6 3.6459 -1.1672 -0.0001 7 1 4.0301 -0.6095 0.8540 8 6 4.1939 -0.5870 -1.3305 9 6 5.5804 -1.2717 -1.4227 10 7 5.3644 -2.6348 -0.8924 11 6 6.5564 -3.1185 -0.1830 12 6 7.6827 -3.3666 -1.1884 13 8 8.0732 -2.1267 -1.7818 14 6 9.1255 -2.2474 -2.7409 15 6 9.4550 -0.8867 -3.2990 16 1 8.9151 -0.0169 -2.9552 17 6 10.4465 -0.7523 -4.2476 18 7 10.7344 0.4351 -4.7342 19 14 11.3808 -2.2568 -4.8417 20 1 12.5745 -2.4688 -3.9841 21 1 11.8120 -2.0486 -6.2474 22 1 10.4989 -3.4491 -4.7660 23 6 4.1916 -2.6106 0.0007 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 2.3791 1.5834 -1.0276 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 3.5610 -0.8721 -2.1708 31 1 4.2960 0.4966 -1.2712 32 1 6.3086 -0.7378 -0.8121 33 1 5.9134 -1.3163 -2.4597 34 1 6.3192 -4.0485 0.3337 35 1 6.8756 -2.3708 0.5430 36 1 7.3331 -4.0469 -1.9649 37 1 8.5367 -3.8089 -0.6755 38 1 8.8064 -2.9045 -3.5498 39 1 10.0094 -2.6662 -2.2599 40 1 11.4317 0.5295 -5.4018 41 1 3.4290 -3.2956 -0.3703 42 1 4.4883 -2.8944 1.0103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643411576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:45 Heat of formation + Delta-G solvation = -69.711236 kcal Electronic energy + Delta-G solvation = -21263.257970 eV Core-core repulsion = 18050.793995 eV Total energy + Delta-G solvation = -3212.463975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.46108 -38.37553 -36.59237 -35.76737 -32.98806 -32.29553 -29.24932 -28.88880 -28.03731 -27.12198 -26.11322 -22.42194 -22.01288 -21.61663 -20.47066 -19.13129 -17.50061 -16.85069 -16.40424 -16.04532 -15.74826 -15.52338 -15.02243 -14.34612 -14.26163 -13.72102 -13.58750 -13.29508 -13.21757 -12.91071 -12.83590 -12.58585 -12.54091 -12.19258 -11.93954 -11.67444 -11.47351 -11.37122 -11.18066 -10.87329 -10.73326 -10.60231 -10.32781 -9.87014 -9.82846 -9.16809 -8.94489 -8.82571 -8.44592 -8.04377 -6.12402 -4.11030 2.46684 2.77531 3.25011 3.32394 3.34751 4.11483 4.35796 4.38344 4.50383 4.68156 4.77318 4.84952 4.96676 5.01086 5.16140 5.19844 5.32232 5.35564 5.40265 5.49138 5.53355 5.59298 5.65006 5.72449 5.88582 5.95554 6.02897 6.11878 6.20012 6.27905 6.36075 6.63161 6.65014 7.02662 7.07714 7.24386 7.32168 7.60558 7.98551 8.02780 8.66834 8.97996 9.47699 11.00537 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029827 B = 0.003725 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.533677 B = 7514.031253 C = 8186.016469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.624 5.624 3 C 0.076 3.924 4 C 0.527 3.473 5 O -0.538 6.538 6 C -0.133 4.133 7 H 0.099 0.901 8 C -0.120 4.120 9 C 0.059 3.941 10 N -0.525 5.525 11 C 0.055 3.945 12 C 0.061 3.939 13 O -0.379 6.379 14 C 0.169 3.831 15 C -0.516 4.516 16 H 0.082 0.918 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.875 3.125 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.266 1.266 23 C 0.057 3.943 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.041 0.959 38 H 0.003 0.997 39 H -0.004 1.004 40 H 0.266 0.734 41 H 0.094 0.906 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.713 -0.650 11.149 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.358 5.358 3 C -0.067 4.067 4 C 0.315 3.685 5 O -0.414 6.414 6 C -0.155 4.155 7 H 0.117 0.883 8 C -0.159 4.159 9 C -0.068 4.068 10 N -0.250 5.250 11 C -0.073 4.073 12 C -0.017 4.017 13 O -0.298 6.298 14 C 0.094 3.906 15 C -0.554 4.554 16 H 0.100 0.900 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.702 3.298 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.190 1.190 23 C -0.072 4.072 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.013 0.987 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.083 -1.280 10.651 20.172 hybrid contribution 0.924 -0.236 0.285 0.995 sum -16.159 -1.516 10.936 19.571 Atomic orbital electron populations 1.21626 0.79313 1.03153 1.01673 1.47738 1.07031 1.06596 1.74441 1.21923 0.97384 0.84965 1.02431 1.20512 0.89954 0.82982 0.75056 1.90671 1.70242 1.31004 1.49513 1.22554 0.91562 1.00376 1.00985 0.88268 1.22861 0.97819 1.00266 0.94917 1.23048 0.94093 0.86571 1.03090 1.63684 1.03143 1.24850 1.33306 1.22351 0.90086 0.99880 0.94980 1.22333 0.94879 0.88901 0.95585 1.87902 1.55788 1.27657 1.58436 1.20571 0.84874 0.98462 0.86734 1.20873 1.19484 0.92705 1.22364 0.90036 1.24761 0.96499 0.95948 0.95762 1.69871 1.31785 1.22227 1.29612 0.86860 0.80663 0.83771 0.78519 1.20028 1.20836 1.19032 1.22784 0.93939 0.94354 0.96079 0.92895 0.91262 0.90527 0.91958 0.91077 0.90596 0.90584 0.90154 0.92223 0.88456 0.90267 0.94095 0.93406 0.94123 0.97922 0.98652 0.92407 0.88796 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 10.44 59.85 0.62 1.31 16 2 N -0.62 -6.11 3.27 -189.52 -0.62 -6.73 16 3 C 0.08 0.52 9.04 59.84 0.54 1.06 16 4 C 0.53 6.66 7.04 -10.98 -0.08 6.58 16 5 O -0.54 -8.61 15.00 5.56 0.08 -8.52 16 6 C -0.13 -1.56 2.36 -89.95 -0.21 -1.77 16 7 H 0.10 1.00 7.27 -51.93 -0.38 0.62 16 8 C -0.12 -1.49 5.74 -24.59 -0.14 -1.63 16 9 C 0.06 0.94 5.07 -2.30 -0.01 0.93 16 10 N -0.53 -8.11 5.16 -231.25 -1.19 -9.30 16 11 C 0.06 0.82 5.13 -3.82 -0.02 0.80 16 12 C 0.06 1.08 6.23 37.16 0.23 1.31 16 13 O -0.38 -8.43 7.67 -35.23 -0.27 -8.70 16 14 C 0.17 4.23 4.76 36.01 0.17 4.40 16 15 C -0.52 -15.01 9.99 -34.44 -0.34 -15.35 16 16 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 17 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 19 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 23 C 0.06 0.76 6.29 -2.84 -0.02 0.75 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 26 H 0.08 0.74 7.42 -51.93 -0.39 0.35 16 27 H 0.06 0.41 7.78 -51.93 -0.40 0.00 16 28 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 29 H 0.08 0.49 6.06 -51.93 -0.31 0.18 16 30 H 0.08 1.00 8.04 -51.93 -0.42 0.59 16 31 H 0.08 0.84 6.77 -51.93 -0.35 0.48 16 32 H 0.06 1.01 7.21 -51.93 -0.37 0.64 16 33 H 0.10 1.84 7.60 -51.93 -0.39 1.44 16 34 H 0.08 0.99 8.03 -51.93 -0.42 0.57 16 35 H 0.04 0.60 7.85 -51.93 -0.41 0.20 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.00 0.08 7.20 -51.93 -0.37 -0.30 16 39 H 0.00 -0.10 7.57 -51.93 -0.39 -0.50 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.09 1.42 6.80 -51.92 -0.35 1.07 16 42 H 0.05 0.66 7.55 -51.93 -0.39 0.26 16 LS Contribution 330.93 15.07 4.99 4.99 Total: -1.00 -33.36 330.93 -7.31 -40.68 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -7.05 Total: -2.93 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 0.65 Total: 0.37 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -1.04 Total: -42.57 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.19 Total: -17.23 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.36 -7.31 -40.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643411576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.031 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds