Wall clock time and date at job start Mon Mar 30 2020 00:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 119.99898 * 2 1 4 4 C 1.34772 * 119.99800 * 179.97438 * 2 1 3 5 5 O 1.21278 * 120.00318 * 0.02562 * 4 2 1 6 6 C 1.50708 * 119.99746 * 179.97438 * 4 2 1 7 7 H 1.08994 * 110.62455 * 56.89966 * 6 4 2 8 8 C 1.55138 * 110.70514 * 293.60209 * 6 4 2 9 9 C 1.54911 * 101.65002 * 205.96509 * 8 6 4 10 10 N 1.47845 * 104.79694 * 37.07063 * 9 8 6 11 11 C 1.46904 * 110.99468 * 213.63615 * 10 9 8 12 12 C 1.52998 * 109.47264 * 290.84180 * 11 10 9 13 13 O 1.42896 * 109.47121 * 65.00078 * 12 11 10 14 14 C 1.42897 * 113.99832 * 179.97438 * 13 12 11 15 15 C 1.50708 * 109.47055 * 180.02562 * 14 13 12 16 16 H 1.07991 * 119.99789 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00008 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00089 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 C 1.47437 * 108.56521 * 335.90070 * 10 9 8 24 24 H 1.09006 * 109.47404 * 270.00240 * 1 2 3 25 25 H 1.08998 * 109.47234 * 30.00047 * 1 2 3 26 26 H 1.09004 * 109.47207 * 150.00043 * 1 2 3 27 27 H 1.08996 * 109.47298 * 269.99870 * 3 2 1 28 28 H 1.09000 * 109.47589 * 30.00023 * 3 2 1 29 29 H 1.09001 * 109.47201 * 149.99940 * 3 2 1 30 30 H 1.08998 * 110.99413 * 324.05233 * 8 6 4 31 31 H 1.09000 * 110.99031 * 87.83429 * 8 6 4 32 32 H 1.09002 * 110.36895 * 278.23874 * 9 8 6 33 33 H 1.09005 * 110.37487 * 155.90193 * 9 8 6 34 34 H 1.09005 * 109.46736 * 170.84547 * 11 10 9 35 35 H 1.08993 * 109.47459 * 50.84722 * 11 10 9 36 36 H 1.09001 * 109.46964 * 305.00009 * 12 11 10 37 37 H 1.08995 * 109.47202 * 185.00633 * 12 11 10 38 38 H 1.08994 * 109.47709 * 60.00486 * 14 13 12 39 39 H 1.09000 * 109.47443 * 300.00391 * 14 13 12 40 40 H 0.96997 * 119.99848 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.88188 * 120.40077 * 23 10 9 42 42 H 1.08996 * 109.89263 * 241.58397 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5324 -2.2175 0.0005 6 6 3.6459 -1.1672 -0.0001 7 1 4.0301 -0.6095 0.8540 8 6 4.1939 -0.5870 -1.3305 9 6 5.5804 -1.2717 -1.4227 10 7 5.3644 -2.6348 -0.8924 11 6 6.5564 -3.1185 -0.1830 12 6 7.6827 -3.3666 -1.1884 13 8 8.0732 -2.1267 -1.7818 14 6 9.1255 -2.2474 -2.7409 15 6 9.4550 -0.8867 -3.2990 16 1 8.9151 -0.0169 -2.9552 17 6 10.4465 -0.7523 -4.2476 18 7 10.7344 0.4351 -4.7342 19 14 11.3808 -2.2568 -4.8417 20 1 12.5745 -2.4688 -3.9841 21 1 11.8120 -2.0486 -6.2474 22 1 10.4989 -3.4491 -4.7660 23 6 4.1916 -2.6106 0.0007 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 2.3791 1.5834 -1.0276 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 3.5610 -0.8721 -2.1708 31 1 4.2960 0.4966 -1.2712 32 1 6.3086 -0.7378 -0.8121 33 1 5.9134 -1.3163 -2.4597 34 1 6.3192 -4.0485 0.3337 35 1 6.8756 -2.3708 0.5430 36 1 7.3331 -4.0469 -1.9649 37 1 8.5367 -3.8089 -0.6755 38 1 8.8064 -2.9045 -3.5498 39 1 10.0094 -2.6662 -2.2599 40 1 11.4317 0.5295 -5.4018 41 1 3.4290 -3.2956 -0.3703 42 1 4.4883 -2.8944 1.0103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643411576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:44 Heat of formation + Delta-G solvation = -94.570845 kcal Electronic energy + Delta-G solvation = -21264.335964 eV Core-core repulsion = 18050.793995 eV Total energy + Delta-G solvation = -3213.541969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.44291 -39.58318 -38.18282 -36.62808 -34.92573 -33.74301 -30.64245 -30.15294 -29.21385 -28.36570 -26.95847 -24.04770 -23.53811 -22.82789 -21.69474 -20.04366 -19.02799 -18.39091 -17.46178 -17.41146 -17.01583 -16.64162 -16.47875 -15.97544 -15.55609 -14.97171 -14.70290 -14.63425 -14.43399 -14.31351 -13.83422 -13.61502 -13.45702 -13.26696 -13.13898 -13.08256 -12.79582 -12.74544 -12.43282 -12.39647 -12.12580 -11.88228 -11.79341 -11.75559 -11.26806 -10.90162 -10.85287 -10.28127 -9.71516 -9.24986 -8.35299 -6.41649 1.34089 1.36407 1.47278 1.51146 2.01236 2.30434 2.97722 2.98767 3.13079 3.43018 3.48547 3.81385 4.03738 4.18082 4.30935 4.35719 4.38304 4.43955 4.47608 4.49897 4.53622 4.61494 4.67489 4.74483 4.76639 4.81330 4.89835 4.92000 4.99513 5.03934 5.07639 5.15250 5.27775 5.47471 5.49065 5.96260 6.03451 6.14839 6.27584 6.61802 6.77942 7.07811 7.22651 8.81318 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029827 B = 0.003725 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.533677 B = 7514.031253 C = 8186.016469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.620 5.620 3 C 0.068 3.932 4 C 0.522 3.478 5 O -0.580 6.580 6 C -0.122 4.122 7 H 0.124 0.876 8 C -0.109 4.109 9 C 0.063 3.937 10 N -0.541 5.541 11 C 0.060 3.940 12 C 0.053 3.947 13 O -0.394 6.394 14 C 0.180 3.820 15 C -0.537 4.537 16 H 0.036 0.964 17 C 0.015 3.985 18 N -0.941 5.941 19 Si 0.950 3.050 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.250 1.250 23 C 0.059 3.941 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.004 0.996 39 H 0.008 0.992 40 H 0.272 0.728 41 H 0.076 0.924 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.806 -1.369 12.204 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.352 5.352 3 C -0.074 4.074 4 C 0.310 3.690 5 O -0.460 6.460 6 C -0.144 4.144 7 H 0.141 0.859 8 C -0.147 4.147 9 C -0.064 4.064 10 N -0.266 5.266 11 C -0.068 4.068 12 C -0.024 4.024 13 O -0.314 6.314 14 C 0.104 3.896 15 C -0.575 4.575 16 H 0.054 0.946 17 C -0.183 4.183 18 N -0.580 5.580 19 Si 0.772 3.228 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.174 1.174 23 C -0.069 4.069 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.022 0.978 39 H 0.026 0.974 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.199 -1.966 11.727 20.909 hybrid contribution 0.864 0.084 -0.010 0.868 sum -16.335 -1.882 11.717 20.191 Atomic orbital electron populations 1.21767 0.78352 1.03529 1.02476 1.47880 1.07900 1.06776 1.72693 1.22168 0.97913 0.84068 1.03251 1.20619 0.90171 0.83268 0.74937 1.90653 1.70923 1.32624 1.51816 1.22480 0.91293 0.99420 1.01204 0.85850 1.22756 0.95410 1.01355 0.95169 1.22823 0.95671 0.87438 1.00485 1.63571 1.04044 1.24454 1.34518 1.22382 0.88890 1.01405 0.94111 1.22645 0.96584 0.87129 0.96083 1.87891 1.54996 1.30471 1.58035 1.20268 0.86106 0.95811 0.87444 1.21122 1.19643 0.93435 1.23255 0.94559 1.25753 0.97373 0.99638 0.95572 1.70017 1.32705 1.24946 1.30382 0.85686 0.79414 0.79459 0.78269 1.18448 1.20023 1.17363 1.22704 0.92639 0.95245 0.96336 0.91873 0.88479 0.92552 0.91494 0.88524 0.90038 0.91629 0.87866 0.93550 0.92380 0.87264 0.93760 0.93644 0.92198 0.97798 0.97446 0.91915 0.90615 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.44 127.77 1.33 2.51 16 2 N -0.62 -11.02 3.27 -871.90 -2.85 -13.87 16 3 C 0.07 0.74 9.04 127.77 1.15 1.89 16 4 C 0.52 12.69 7.04 87.66 0.62 13.31 16 5 O -0.58 -18.62 15.00 -3.02 -0.05 -18.66 16 6 C -0.12 -2.71 2.36 -10.36 -0.02 -2.73 16 7 H 0.12 2.15 7.27 -2.39 -0.02 2.14 16 8 C -0.11 -2.65 5.74 31.98 0.18 -2.46 16 9 C 0.06 2.05 5.07 86.77 0.44 2.49 16 10 N -0.54 -16.44 5.16 -885.53 -4.57 -21.02 16 11 C 0.06 1.69 5.13 86.30 0.44 2.13 16 12 C 0.05 1.80 6.23 71.98 0.45 2.24 16 13 O -0.39 -17.69 7.67 -148.98 -1.14 -18.83 16 14 C 0.18 8.95 4.76 71.24 0.34 9.29 16 15 C -0.54 -32.07 9.99 25.60 0.26 -31.81 16 16 H 0.04 2.41 8.06 -2.92 -0.02 2.39 16 17 C 0.01 0.86 5.47 84.65 0.46 1.32 16 18 N -0.94 -58.52 13.96 21.45 0.30 -58.22 16 19 Si 0.95 43.48 27.47 68.60 1.88 45.37 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 23 C 0.06 1.52 6.29 86.65 0.55 2.06 16 24 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.10 0.86 8.07 -2.39 -0.02 0.84 16 26 H 0.06 1.07 7.42 -2.39 -0.02 1.05 16 27 H 0.07 0.71 7.78 -2.39 -0.02 0.69 16 28 H 0.10 0.60 8.07 -2.39 -0.02 0.58 16 29 H 0.08 0.82 6.06 -2.39 -0.01 0.81 16 30 H 0.06 1.74 8.04 -2.39 -0.02 1.72 16 31 H 0.10 2.01 6.77 -2.39 -0.02 2.00 16 32 H 0.05 1.60 7.21 -2.39 -0.02 1.59 16 33 H 0.06 2.32 7.60 -2.38 -0.02 2.31 16 34 H 0.11 2.42 8.03 -2.38 -0.02 2.40 16 35 H 0.04 1.23 7.85 -2.39 -0.02 1.21 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.00 0.21 7.20 -2.39 -0.02 0.19 16 39 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 40 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.08 2.28 6.80 -2.38 -0.02 2.27 16 42 H 0.07 1.60 7.55 -2.39 -0.02 1.58 16 Total: -1.00 -74.76 330.93 0.70 -74.06 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.93 Total: 10.92 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 6.20 Total: 0.25 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -7.13 Total: -93.11 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -1.19 Total: -37.49 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.37 kcal Total: -74.76 0.70 -74.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643411576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.510 kcal (2) G-P(sol) polarization free energy of solvation -74.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds