Wall clock time and date at job start Mon Mar 30 2020 00:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00159 * 2 1 4 4 C 1.52995 * 109.47225 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47583 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47251 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99937 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99460 * 180.02562 * 6 5 4 9 9 C 1.47424 * 125.65284 * 5.05607 * 8 6 5 10 10 C 1.54913 * 104.83275 * 155.89562 * 9 8 6 11 11 C 1.55151 * 101.58253 * 37.00913 * 10 9 8 12 12 C 1.47022 * 125.64439 * 185.08123 * 8 6 5 13 13 H 1.08997 * 110.01173 * 300.52923 * 12 8 6 14 14 C 1.53005 * 109.87994 * 61.62199 * 12 8 6 15 15 N 1.46506 * 109.46856 * 183.27180 * 14 12 8 16 16 C 1.36938 * 119.99541 * 175.01551 * 15 14 12 17 17 H 1.07990 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99163 * 180.27776 * 16 15 14 19 19 N 1.31624 * 119.99538 * 179.72728 * 18 16 15 20 20 Si 1.86797 * 120.00601 * 359.72347 * 18 16 15 21 21 H 1.48504 * 109.46837 * 90.00051 * 20 18 16 22 22 H 1.48492 * 109.47302 * 210.00402 * 20 18 16 23 23 H 1.48499 * 109.46851 * 330.00480 * 20 18 16 24 24 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47038 * 300.00057 * 1 2 3 26 26 H 1.09005 * 109.47222 * 59.99098 * 1 2 3 27 27 H 1.09001 * 109.46906 * 60.00169 * 3 2 1 28 28 H 1.09004 * 109.47389 * 300.00283 * 3 2 1 29 29 H 1.09001 * 109.46968 * 60.00295 * 4 3 2 30 30 H 1.09004 * 109.47241 * 300.00462 * 4 3 2 31 31 H 1.09001 * 109.47042 * 59.99955 * 5 4 3 32 32 H 1.09004 * 109.46894 * 300.00289 * 5 4 3 33 33 H 1.08999 * 110.36380 * 37.05453 * 9 8 6 34 34 H 1.09002 * 110.36803 * 274.73142 * 9 8 6 35 35 H 1.09003 * 111.00092 * 278.93665 * 10 9 8 36 36 H 1.08997 * 111.00320 * 155.08553 * 10 9 8 37 37 H 1.08998 * 110.72168 * 206.13494 * 11 10 9 38 38 H 1.09001 * 110.72178 * 82.86020 * 11 10 9 39 39 H 1.09001 * 109.47084 * 63.27503 * 14 12 8 40 40 H 1.08991 * 109.47220 * 303.27228 * 14 12 8 41 41 H 0.96998 * 120.00352 * 355.02201 * 15 14 12 42 42 H 0.96995 * 120.00268 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1579 2.5823 0.0013 6 6 5.6602 2.4632 0.0013 7 8 6.1817 1.3683 0.0013 8 7 6.4241 3.5736 0.0023 9 6 5.9281 4.9577 0.1091 10 6 7.1224 5.7643 0.6773 11 6 8.3231 5.0846 -0.0324 12 6 7.8902 3.6050 -0.1034 13 1 8.3356 3.0484 0.7212 14 6 8.3288 2.9979 -1.4376 15 7 9.7920 2.9622 -1.5003 16 6 10.4174 2.3647 -2.5619 17 1 9.8320 1.9202 -3.3531 18 6 11.8039 2.3258 -2.6184 19 7 12.4050 1.7468 -3.6361 20 14 12.8165 3.0953 -1.2502 21 1 13.0787 2.0807 -0.1980 22 1 14.1066 3.5808 -1.8023 23 1 12.0689 4.2359 -0.6627 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5140 -0.8899 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8574 0.6436 -0.8891 30 1 3.8567 0.6438 0.8908 31 1 3.8359 3.1230 0.8913 32 1 3.8366 3.1235 -0.8887 33 1 5.0794 5.0050 0.7915 34 1 5.6474 5.3370 -0.8735 35 1 7.1920 5.6495 1.7590 36 1 7.0499 6.8163 0.4014 37 1 9.2322 5.1925 0.5592 38 1 8.4619 5.4942 -1.0329 39 1 7.9447 3.6056 -2.2570 40 1 7.9366 1.9845 -1.5221 41 1 10.3179 3.3617 -0.7898 42 1 13.3738 1.7199 -3.6759 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698728334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:09 Heat of formation + Delta-G solvation = -100.166083 kcal Electronic energy + Delta-G solvation = -20926.304006 eV Core-core repulsion = 17712.519410 eV Total energy + Delta-G solvation = -3213.784596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.28782 -39.08451 -38.57483 -36.59464 -34.68985 -33.69331 -32.56468 -30.79055 -28.71656 -26.84130 -26.65433 -24.55437 -23.57150 -22.70035 -21.60535 -20.36201 -19.43065 -18.16483 -17.69183 -17.29188 -17.07207 -16.51298 -16.22281 -15.93092 -15.68924 -15.33108 -15.10299 -14.82483 -14.55149 -14.12643 -13.95291 -13.74395 -13.31136 -13.07080 -13.01505 -12.95739 -12.79575 -12.57750 -12.16137 -12.08620 -11.94889 -11.91474 -11.87137 -11.78950 -11.58194 -11.07625 -10.85633 -10.58776 -9.66712 -9.39481 -8.08207 -5.44242 1.33018 1.40079 1.46792 1.62616 1.92599 2.44623 2.87469 3.22055 3.45250 3.60258 3.74512 3.82755 3.94135 3.99772 4.15111 4.26964 4.30368 4.35895 4.48338 4.51519 4.52670 4.54812 4.59716 4.65122 4.77722 4.84700 4.87884 4.92284 4.99996 5.09734 5.13019 5.15491 5.24839 5.35986 5.43724 5.66939 6.14377 6.28594 6.58266 6.99760 7.19459 7.72369 7.96451 9.13621 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023459 B = 0.003793 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.286636 B = 7380.319988 C = 8294.807774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.428 6.428 3 C 0.066 3.934 4 C -0.105 4.105 5 C -0.115 4.115 6 C 0.512 3.488 7 O -0.591 6.591 8 N -0.614 5.614 9 C 0.093 3.907 10 C -0.119 4.119 11 C -0.126 4.126 12 C 0.130 3.870 13 H 0.055 0.945 14 C 0.156 3.844 15 N -0.749 5.749 16 C -0.244 4.244 17 H 0.045 0.955 18 C -0.064 4.064 19 N -0.984 5.984 20 Si 0.962 3.038 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.241 1.241 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.133 0.867 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.023 0.977 40 H 0.003 0.997 41 H 0.369 0.631 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.032 12.121 13.463 30.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.348 6.348 3 C -0.010 4.010 4 C -0.143 4.143 5 C -0.154 4.154 6 C 0.302 3.698 7 O -0.471 6.471 8 N -0.348 5.348 9 C -0.027 4.027 10 C -0.157 4.157 11 C -0.164 4.164 12 C 0.026 3.974 13 H 0.073 0.927 14 C 0.028 3.972 15 N -0.395 5.395 16 C -0.375 4.375 17 H 0.063 0.937 18 C -0.255 4.255 19 N -0.634 5.634 20 Si 0.787 3.213 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.165 1.165 24 H 0.108 0.892 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.131 0.869 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.041 0.959 40 H 0.022 0.978 41 H 0.203 0.797 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.733 11.215 13.264 30.223 hybrid contribution 1.152 -0.366 -0.008 1.209 sum -23.581 10.849 13.255 29.145 Atomic orbital electron populations 1.22920 0.79273 1.03641 1.01160 1.87863 1.21748 1.29466 1.95690 1.22571 0.92034 0.84368 1.02065 1.21184 0.94170 0.96465 1.02518 1.21521 0.87648 0.98850 1.07397 1.21277 0.91092 0.82381 0.75003 1.90750 1.76280 1.28430 1.51663 1.48697 1.06005 1.07944 1.72173 1.22725 0.98575 0.78630 1.02818 1.22816 0.91748 1.00489 1.00642 1.22695 1.00060 0.91211 1.02455 1.21603 0.81661 0.98580 0.95587 0.92665 1.20915 0.83243 0.97110 0.95917 1.42437 1.02132 1.69999 1.24973 1.18966 0.90509 1.28779 0.99224 0.93675 1.25626 0.97404 1.01567 1.00908 1.69904 1.09091 1.50758 1.33625 0.85315 0.78071 0.79291 0.78581 1.20694 1.21417 1.16469 0.89206 0.92593 0.92934 0.90790 0.91442 0.93442 0.92561 0.84945 0.85998 0.86817 0.89838 0.89631 0.86895 0.89912 0.90655 0.95939 0.97836 0.79703 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.43 -9.06 10.70 -148.98 -1.59 -10.66 16 3 C 0.07 1.04 5.94 71.98 0.43 1.46 16 4 C -0.11 -2.31 4.87 30.59 0.15 -2.16 16 5 C -0.11 -1.94 4.79 29.85 0.14 -1.80 16 6 C 0.51 15.03 7.58 87.66 0.66 15.70 16 7 O -0.59 -24.86 15.17 -3.02 -0.05 -24.91 16 8 N -0.61 -15.98 3.06 -788.03 -2.42 -18.39 16 9 C 0.09 1.30 6.65 86.86 0.58 1.88 16 10 C -0.12 -1.64 7.08 31.99 0.23 -1.41 16 11 C -0.13 -3.05 6.00 31.78 0.19 -2.86 16 12 C 0.13 4.28 2.95 45.34 0.13 4.42 16 13 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 14 C 0.16 6.92 5.64 86.38 0.49 7.40 16 15 N -0.75 -38.33 5.24 -343.44 -1.80 -40.13 16 16 C -0.24 -15.15 10.48 84.04 0.88 -14.27 16 17 H 0.05 3.12 8.06 -2.92 -0.02 3.10 16 18 C -0.06 -3.95 5.50 84.86 0.47 -3.48 16 19 N -0.98 -65.88 13.97 21.65 0.30 -65.58 16 20 Si 0.96 46.71 27.73 68.60 1.90 48.61 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 23 H -0.24 -10.16 6.52 99.48 0.65 -9.51 16 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 30 H 0.06 1.46 8.10 -2.38 -0.02 1.44 16 31 H 0.13 1.20 7.76 -2.39 -0.02 1.18 16 32 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.11 0.76 7.51 -2.39 -0.02 0.74 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 1.98 7.80 -2.39 -0.02 1.97 16 39 H 0.02 1.00 8.06 -2.39 -0.02 0.98 16 40 H 0.00 0.18 6.93 -2.39 -0.02 0.17 16 41 H 0.37 17.37 5.26 -92.71 -0.49 16.88 16 42 H 0.26 16.42 8.31 -92.71 -0.77 15.65 16 Total: -1.00 -87.07 340.56 2.38 -84.69 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.44 Total: 19.91 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 5.59 Total: 6.45 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -3.91 Total: -124.11 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -1.64 Total: -35.56 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.90 Total: 48.61 kcal Total: -87.07 2.38 -84.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698728334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.479 kcal (2) G-P(sol) polarization free energy of solvation -87.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds