Wall clock time and date at job start Mon Mar 30 2020 00:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00199 * 2 1 4 4 C 1.53001 * 109.47418 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47222 * 179.97438 * 4 3 2 6 6 O 1.21285 * 120.00095 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00244 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00093 * 180.02562 * 7 5 4 9 9 H 1.08995 * 110.01401 * 325.06809 * 8 7 5 10 10 C 1.54266 * 110.03070 * 86.45671 * 8 7 5 11 11 C 1.54894 * 104.31305 * 95.65382 * 10 8 7 12 12 C 1.55238 * 102.58338 * 37.93170 * 11 10 8 13 13 C 1.53869 * 110.06928 * 203.64661 * 8 7 5 14 14 H 1.08999 * 110.04012 * 359.97438 * 13 8 7 15 15 C 1.53007 * 110.03216 * 121.41298 * 13 8 7 16 16 N 1.46493 * 109.47303 * 184.99765 * 15 13 8 17 17 C 1.36937 * 119.99991 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00168 * 0.02562 * 17 16 15 19 19 C 1.38820 * 119.99978 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99741 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99736 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47656 * 90.00360 * 21 19 17 23 23 H 1.48501 * 109.46947 * 210.00439 * 21 19 17 24 24 H 1.48501 * 109.47387 * 330.00036 * 21 19 17 25 25 H 1.09004 * 109.46819 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47161 * 299.99819 * 1 2 3 27 27 H 1.08991 * 109.47226 * 60.00170 * 1 2 3 28 28 H 1.08998 * 109.47033 * 60.00229 * 3 2 1 29 29 H 1.09002 * 109.47105 * 300.00205 * 3 2 1 30 30 H 1.08998 * 109.47058 * 59.99967 * 4 3 2 31 31 H 1.09002 * 109.46924 * 300.00039 * 4 3 2 32 32 H 0.96999 * 119.99541 * 0.02562 * 7 5 4 33 33 H 1.09002 * 110.48629 * 214.40135 * 10 8 7 34 34 H 1.08998 * 110.48744 * 336.91039 * 10 8 7 35 35 H 1.08996 * 110.75388 * 156.31523 * 11 10 8 36 36 H 1.08993 * 110.76071 * 279.69749 * 11 10 8 37 37 H 1.09005 * 110.46917 * 203.39204 * 12 11 10 38 38 H 1.09006 * 110.46947 * 80.77225 * 12 11 10 39 39 H 1.09008 * 109.46690 * 305.00203 * 15 13 8 40 40 H 1.08999 * 109.47013 * 64.99436 * 15 13 8 41 41 H 0.97000 * 120.00187 * 359.97438 * 16 15 13 42 42 H 0.96999 * 119.99705 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1484 2.5613 -0.0013 6 8 3.4356 3.5425 -0.0008 7 7 5.4888 2.7023 -0.0014 8 6 6.0847 4.0406 -0.0014 9 1 5.4693 4.7229 -0.5878 10 6 6.2179 4.5598 1.4451 11 6 7.6721 4.2080 1.8458 12 6 8.4578 4.4716 0.5332 13 6 7.5088 3.9845 -0.5812 14 1 7.7576 2.9613 -0.8625 15 6 7.6154 4.9042 -1.7994 16 7 8.9372 4.7519 -2.4122 17 6 9.2641 5.4800 -3.5250 18 1 8.5476 6.1668 -3.9505 19 6 10.5169 5.3360 -4.1054 20 7 11.3903 4.4992 -3.5864 21 14 10.9629 6.3297 -5.6229 22 1 11.5770 7.6168 -5.2089 23 1 11.9295 5.5635 -6.4499 24 1 9.7369 6.5988 -6.4164 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8567 0.6439 -0.8908 31 1 3.8575 0.6435 0.8891 32 1 6.0590 1.9175 -0.0014 33 1 6.0630 5.6382 1.4792 34 1 5.5087 4.0526 2.0993 35 1 8.0211 4.8611 2.6456 36 1 7.7496 3.1611 2.1389 37 1 9.3850 3.8985 0.5222 38 1 8.6647 5.5359 0.4199 39 1 6.8459 4.6379 -2.5241 40 1 7.4771 5.9391 -1.4865 41 1 9.5810 4.1352 -2.0298 42 1 12.2658 4.3989 -3.9917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715554374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:21 Heat of formation + Delta-G solvation = -114.167519 kcal Electronic energy + Delta-G solvation = -20732.123269 eV Core-core repulsion = 17517.731524 eV Total energy + Delta-G solvation = -3214.391744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19512 -39.41702 -38.58073 -36.33317 -34.61661 -33.28077 -32.71753 -30.20676 -28.85949 -27.40781 -26.33670 -24.73748 -23.68213 -22.03639 -21.09402 -20.68394 -19.21773 -18.25638 -17.64148 -17.27121 -16.76233 -16.59364 -16.27384 -15.92405 -15.69798 -15.41102 -15.20841 -14.97928 -14.57357 -14.34364 -13.96459 -13.37950 -13.20316 -12.89723 -12.79777 -12.59453 -12.43297 -12.36237 -12.17616 -12.14044 -11.93334 -11.87099 -11.72609 -11.62859 -11.46435 -10.96728 -10.89757 -10.67759 -10.04764 -9.01231 -7.96730 -5.25152 1.46628 1.47962 1.56518 1.60913 2.02181 2.54887 2.97871 3.36392 3.47734 3.67799 3.75411 3.91140 4.04842 4.11880 4.20202 4.41137 4.47495 4.50353 4.52069 4.52731 4.55581 4.65143 4.68291 4.77013 4.81461 4.84928 4.85707 4.99309 5.01832 5.07970 5.18540 5.25670 5.36551 5.47176 5.50608 5.62695 6.14056 6.25957 6.55343 7.23838 7.32859 8.07392 8.32973 9.26585 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.003415 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.337144 B = 8198.182571 C = 9000.235263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.078 3.922 4 C -0.132 4.132 5 C 0.516 3.484 6 O -0.586 6.586 7 N -0.708 5.708 8 C 0.152 3.848 9 H 0.068 0.932 10 C -0.123 4.123 11 C -0.111 4.111 12 C -0.111 4.111 13 C -0.091 4.091 14 H 0.082 0.918 15 C 0.161 3.839 16 N -0.740 5.740 17 C -0.249 4.249 18 H 0.070 0.930 19 C -0.072 4.072 20 N -0.966 5.966 21 Si 0.972 3.028 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.272 1.272 25 H 0.103 0.897 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.415 0.585 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.009 0.991 40 H 0.017 0.983 41 H 0.377 0.623 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 -8.869 12.678 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.001 3.999 4 C -0.172 4.172 5 C 0.304 3.696 6 O -0.466 6.466 7 N -0.360 5.360 8 C 0.046 3.954 9 H 0.086 0.914 10 C -0.162 4.162 11 C -0.148 4.148 12 C -0.149 4.149 13 C -0.110 4.110 14 H 0.100 0.900 15 C 0.034 3.966 16 N -0.382 5.382 17 C -0.381 4.381 18 H 0.088 0.912 19 C -0.264 4.264 20 N -0.617 5.617 21 Si 0.801 3.199 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.197 1.197 25 H 0.121 0.879 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.135 0.865 31 H 0.144 0.856 32 H 0.252 0.748 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.027 0.973 40 H 0.035 0.965 41 H 0.209 0.791 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.137 -8.221 12.530 22.765 hybrid contribution 0.769 0.408 -1.024 1.344 sum -16.368 -7.813 11.506 21.479 Atomic orbital electron populations 1.22939 0.79302 1.04046 1.00756 1.87768 1.21593 1.27914 1.95630 1.22097 0.92654 0.84147 1.01026 1.21450 0.94615 0.93562 1.07526 1.20867 0.82351 0.91631 0.74737 1.90698 1.61886 1.42371 1.51668 1.46064 1.06481 1.09242 1.74198 1.21420 0.92667 0.84224 0.97055 0.91397 1.22676 0.97696 1.01202 0.94638 1.22535 0.93536 1.02320 0.96409 1.22374 0.97743 1.00831 0.93988 1.22055 0.94003 1.00044 0.94890 0.89952 1.20840 0.86721 0.96465 0.92533 1.42472 1.13226 1.50434 1.32114 1.19601 0.97864 1.16870 1.03721 0.91187 1.25529 0.96718 1.01415 1.02774 1.69797 1.06987 1.41126 1.43779 0.85164 0.77646 0.77813 0.79283 1.21311 1.21902 1.19745 0.87857 0.93261 0.93621 0.92864 0.93566 0.86544 0.85646 0.74798 0.91128 0.90938 0.90372 0.90057 0.91896 0.92780 0.97332 0.96479 0.79070 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -7.81 10.70 -148.98 -1.59 -9.41 16 3 C 0.08 1.51 5.23 71.98 0.38 1.89 16 4 C -0.13 -2.20 6.07 29.85 0.18 -2.02 16 5 C 0.52 12.12 7.82 87.66 0.69 12.81 16 6 O -0.59 -18.64 15.66 -3.04 -0.05 -18.69 16 7 N -0.71 -15.28 5.04 -439.11 -2.22 -17.49 16 8 C 0.15 4.03 2.88 45.71 0.13 4.17 16 9 H 0.07 2.17 7.14 -2.39 -0.02 2.15 16 10 C -0.12 -2.84 6.52 31.67 0.21 -2.63 16 11 C -0.11 -2.34 6.94 32.01 0.22 -2.11 16 12 C -0.11 -3.19 6.09 31.79 0.19 -3.00 16 13 C -0.09 -2.76 2.73 -10.07 -0.03 -2.79 16 14 H 0.08 2.45 7.61 -2.39 -0.02 2.43 16 15 C 0.16 6.58 5.31 86.38 0.46 7.04 16 16 N -0.74 -37.69 5.45 -343.44 -1.87 -39.56 16 17 C -0.25 -14.12 9.99 84.04 0.84 -13.28 16 18 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 19 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 20 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 21 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 29 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 30 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.41 6.71 8.30 -92.71 -0.77 5.94 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.58 8.04 -2.39 -0.02 1.56 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.05 1.76 7.76 -2.38 -0.02 1.74 16 39 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 40 H 0.02 0.72 8.00 -2.39 -0.02 0.70 16 41 H 0.38 20.01 7.55 -92.71 -0.70 19.31 16 42 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -70.24 345.03 1.10 -69.14 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: -0.47 Total: 28.10 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 4.98 Total: -2.03 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -3.80 Total: -115.59 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -1.64 Total: -28.10 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -70.24 1.10 -69.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715554374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.026 kcal (2) G-P(sol) polarization free energy of solvation -70.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds