Wall clock time and date at job start Mon Mar 30 2020 00:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.53000 * 109.46726 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.46912 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00271 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.43456 * 36.08072 * 8 7 5 10 10 C 1.54269 * 110.48489 * 273.54265 * 8 7 5 11 11 C 1.53873 * 106.59797 * 217.71000 * 10 8 7 12 12 C 1.54262 * 106.59985 * 0.02562 * 11 10 8 13 13 H 1.09000 * 110.49123 * 264.92959 * 12 11 10 14 14 C 1.52999 * 110.48619 * 142.41817 * 12 11 10 15 15 N 1.46500 * 109.47126 * 66.45417 * 14 12 11 16 16 C 1.36935 * 119.99947 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00278 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99678 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99975 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00257 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47209 * 89.99407 * 20 18 16 22 22 H 1.48496 * 109.47120 * 209.99508 * 20 18 16 23 23 H 1.48498 * 109.46979 * 329.99614 * 20 18 16 24 24 C 1.54887 * 104.19628 * 23.60923 * 12 11 10 25 25 H 1.09004 * 109.46885 * 300.00332 * 1 2 3 26 26 H 1.08996 * 109.46933 * 60.00042 * 1 2 3 27 27 H 1.08996 * 109.46843 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 60.00058 * 3 2 1 29 29 H 1.08992 * 109.47388 * 300.00049 * 3 2 1 30 30 H 1.09002 * 109.47398 * 300.00244 * 4 3 2 31 31 H 1.09001 * 109.47194 * 60.00425 * 4 3 2 32 32 H 0.97005 * 119.99463 * 359.97438 * 7 5 4 33 33 H 1.08997 * 110.03205 * 336.99470 * 10 8 7 34 34 H 1.08995 * 110.03067 * 98.42541 * 10 8 7 35 35 H 1.09001 * 110.03139 * 119.28767 * 11 10 8 36 36 H 1.08997 * 110.03217 * 240.71278 * 11 10 8 37 37 H 1.09001 * 109.47421 * 186.45190 * 14 12 11 38 38 H 1.08998 * 109.47155 * 306.45541 * 14 12 11 39 39 H 0.97003 * 119.99797 * 0.02562 * 15 14 12 40 40 H 0.96991 * 120.00203 * 180.02562 * 19 18 16 41 41 H 1.09000 * 110.75943 * 203.73857 * 24 12 11 42 42 H 1.09001 * 110.75643 * 80.37040 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5614 0.0013 6 8 3.4356 3.5425 0.0008 7 7 5.4888 2.7023 0.0014 8 6 6.0847 4.0406 0.0026 9 1 5.4854 4.7235 0.6047 10 6 6.2227 4.5714 -1.4393 11 6 7.5520 5.3442 -1.4979 12 6 8.1757 5.2555 -0.0897 13 1 7.9163 6.1356 0.4986 14 6 9.6954 5.1061 -0.1857 15 7 10.2724 6.3320 -0.7430 16 6 11.6263 6.4314 -0.9224 17 1 12.2687 5.6061 -0.6533 18 6 12.1729 7.5928 -1.4510 19 7 13.4742 7.6883 -1.6239 20 14 11.0616 9.0202 -1.9171 21 1 10.9000 9.9234 -0.7496 22 1 11.6685 9.7723 -3.0445 23 1 9.7329 8.4994 -2.3277 24 6 7.5412 3.9845 0.5274 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8464 -0.8899 30 1 3.8568 0.6438 0.8908 31 1 3.8575 0.6436 -0.8892 32 1 6.0590 1.9174 0.0014 33 1 6.2433 3.7393 -2.1431 34 1 5.3927 5.2380 -1.6728 35 1 8.2177 4.8872 -2.2302 36 1 7.3671 6.3859 -1.7598 37 1 10.1067 4.9304 0.8084 38 1 9.9375 4.2635 -0.8333 39 1 9.6954 7.0734 -0.9844 40 1 13.8562 8.4999 -1.9929 41 1 7.5614 4.0323 1.6162 42 1 8.0468 3.0876 0.1697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725635733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:42 Heat of formation + Delta-G solvation = -88.487930 kcal Electronic energy + Delta-G solvation = -20358.291798 eV Core-core repulsion = 17145.013605 eV Total energy + Delta-G solvation = -3213.278194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23545 -38.47677 -37.85890 -35.02708 -33.55033 -32.16440 -31.22291 -29.05666 -28.09810 -26.86044 -24.67361 -23.68378 -21.89114 -20.79620 -20.66020 -19.40052 -17.72524 -17.53584 -16.70865 -16.39286 -16.08267 -15.77121 -15.14958 -15.08065 -14.49713 -14.12027 -13.75198 -13.48643 -13.28906 -13.13590 -12.76796 -12.38050 -12.12970 -12.05092 -11.88837 -11.65811 -11.57623 -11.35590 -10.93175 -10.85515 -10.51716 -10.39781 -10.27656 -10.08709 -10.07340 -10.03213 -9.58024 -9.21003 -8.88078 -7.21317 -5.75957 -3.11025 2.38421 2.73264 3.38406 3.41495 3.46217 3.58674 4.38225 4.55398 4.60136 4.62296 4.68003 4.79479 4.92310 4.95944 4.98542 5.13153 5.26974 5.32433 5.38908 5.42857 5.48132 5.50598 5.53411 5.58856 5.71664 5.82223 5.89576 5.99840 6.08448 6.20513 6.30902 6.46202 6.48837 6.69916 6.71269 6.81763 7.27081 7.98046 8.00663 8.43379 9.22911 9.95441 10.15664 11.42532 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.058117 B = 0.002712 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.668651 B =10322.462072 C =10590.771641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.076 3.924 4 C -0.141 4.141 5 C 0.517 3.483 6 O -0.543 6.543 7 N -0.720 5.720 8 C 0.139 3.861 9 H 0.092 0.908 10 C -0.133 4.133 11 C -0.116 4.116 12 C -0.100 4.100 13 H 0.076 0.924 14 C 0.166 3.834 15 N -0.756 5.756 16 C -0.243 4.243 17 H 0.089 0.911 18 C 0.003 3.997 19 N -0.935 5.935 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.276 1.276 24 C -0.120 4.120 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.402 0.598 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.361 0.639 40 H 0.259 0.741 41 H 0.073 0.927 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.614 -15.150 3.851 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.001 4.001 4 C -0.181 4.181 5 C 0.303 3.697 6 O -0.421 6.421 7 N -0.371 5.371 8 C 0.035 3.965 9 H 0.110 0.890 10 C -0.172 4.172 11 C -0.154 4.154 12 C -0.119 4.119 13 H 0.094 0.906 14 C 0.039 3.961 15 N -0.401 5.401 16 C -0.373 4.373 17 H 0.107 0.893 18 C -0.193 4.193 19 N -0.583 5.583 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.158 4.158 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.237 0.763 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.194 0.806 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.771 -14.663 3.846 28.193 hybrid contribution -0.530 0.969 -0.440 1.189 sum -24.301 -13.694 3.406 28.101 Atomic orbital electron populations 1.22739 0.80538 1.02767 1.00263 1.87799 1.20124 1.28048 1.95586 1.22161 0.91920 0.84191 1.01831 1.21487 0.95534 0.95328 1.05762 1.20396 0.82544 0.90968 0.75794 1.90721 1.60992 1.40814 1.49538 1.46092 1.06439 1.09551 1.75055 1.21948 0.94102 0.83287 0.97194 0.88957 1.22546 0.98351 1.00096 0.96159 1.22147 0.95209 1.00402 0.97635 1.22147 0.96543 0.97174 0.96021 0.90552 1.20645 0.88928 0.89948 0.96624 1.42702 1.05174 1.14563 1.77673 1.19066 0.81866 1.01133 1.35239 0.89273 1.24684 0.95494 0.97836 1.01289 1.69703 1.09464 1.28036 1.51112 0.86541 0.80345 0.83482 0.78153 1.21099 1.21762 1.20265 1.22729 0.93228 0.99291 1.00573 0.93916 0.93914 0.89507 0.92369 0.92349 0.87961 0.87943 0.76349 0.91672 0.91669 0.90853 0.91880 0.95583 0.95520 0.80637 0.93093 0.90875 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.40 -3.55 10.70 -35.23 -0.38 -3.93 16 3 C 0.08 0.66 5.23 37.16 0.19 0.86 16 4 C -0.14 -1.05 6.07 -27.88 -0.17 -1.22 16 5 C 0.52 5.32 7.82 -10.98 -0.09 5.24 16 6 O -0.54 -7.76 15.69 5.56 0.09 -7.67 16 7 N -0.72 -6.49 5.11 -52.19 -0.27 -6.76 16 8 C 0.14 1.54 3.16 -66.26 -0.21 1.33 16 9 H 0.09 1.16 7.67 -51.93 -0.40 0.76 16 10 C -0.13 -1.62 6.53 -25.61 -0.17 -1.79 16 11 C -0.12 -1.66 6.05 -25.62 -0.15 -1.81 16 12 C -0.10 -1.44 2.92 -88.96 -0.26 -1.70 16 13 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 14 C 0.17 3.10 5.58 -4.04 -0.02 3.07 16 15 N -0.76 -17.89 5.24 -59.91 -0.31 -18.20 16 16 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 17 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 18 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 19 N -0.94 -29.56 13.97 55.49 0.78 -28.78 16 20 Si 0.88 22.29 27.74 -169.99 -4.71 17.57 16 21 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 24 C -0.12 -1.32 5.92 -24.73 -0.15 -1.47 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 29 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.40 2.53 8.53 -40.82 -0.35 2.18 16 33 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.13 7.77 -51.93 -0.40 0.73 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 39 H 0.36 8.37 5.38 -40.82 -0.22 8.15 16 40 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.77 7.94 -51.93 -0.41 0.36 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -34.08 342.83 -7.08 -41.16 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.28 Total: 4.71 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -0.16 Total: -3.27 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.19 Total: -53.74 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.29 Total: -11.60 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.08 -7.08 -41.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725635733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.324 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds