Wall clock time and date at job start Mon Mar 30 2020 00:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99946 * 2 1 4 4 C 1.52998 * 109.47086 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47008 * 65.70593 * 4 3 2 6 6 C 1.36941 * 120.00121 * 267.90511 * 5 4 3 7 7 H 1.07998 * 120.00089 * 142.25689 * 6 5 4 8 8 C 1.38813 * 119.99790 * 322.25958 * 6 5 4 9 9 N 1.31617 * 119.99883 * 156.37864 * 8 6 5 10 10 Si 1.86796 * 120.00282 * 336.38303 * 8 6 5 11 11 H 1.48496 * 109.47300 * 95.50601 * 10 8 6 12 12 H 1.48497 * 109.47476 * 215.51329 * 10 8 6 13 13 H 1.48510 * 109.46953 * 335.50888 * 10 8 6 14 14 C 1.46491 * 120.00095 * 87.90377 * 5 4 3 15 15 C 1.52999 * 109.47509 * 270.00072 * 14 5 4 16 16 N 1.46501 * 109.47506 * 179.97438 * 15 14 5 17 17 C 1.34769 * 120.00124 * 179.97438 * 16 15 14 18 18 O 1.21277 * 120.00320 * 0.02562 * 17 16 15 19 19 C 1.50707 * 120.00069 * 180.02562 * 17 16 15 20 20 C 1.53783 * 113.61252 * 180.02562 * 19 17 16 21 21 C 1.53790 * 87.16944 * 139.93818 * 20 19 17 22 22 C 1.53776 * 113.61136 * 277.49855 * 19 17 16 23 23 H 1.08997 * 109.47039 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46812 * 299.99747 * 1 2 3 25 25 H 1.08993 * 109.47049 * 60.00279 * 1 2 3 26 26 H 1.08997 * 109.47147 * 59.99798 * 3 2 1 27 27 H 1.09000 * 109.47049 * 300.00116 * 3 2 1 28 28 H 1.09003 * 109.47285 * 305.70686 * 4 3 2 29 29 H 1.08993 * 109.47291 * 185.70389 * 4 3 2 30 30 H 0.96998 * 120.00219 * 179.97438 * 9 8 6 31 31 H 1.09007 * 109.47573 * 149.99991 * 14 5 4 32 32 H 1.08997 * 109.47348 * 30.00559 * 14 5 4 33 33 H 1.08999 * 109.47291 * 59.99791 * 15 14 5 34 34 H 1.09002 * 109.46835 * 299.99952 * 15 14 5 35 35 H 0.97006 * 119.99748 * 0.02562 * 16 15 14 36 36 H 1.09001 * 112.84684 * 48.80464 * 19 17 16 37 37 H 1.08994 * 113.61083 * 254.52090 * 20 19 17 38 38 H 1.08999 * 113.61592 * 25.35011 * 20 19 17 39 39 H 1.08996 * 113.61245 * 89.15782 * 21 20 19 40 40 H 1.08999 * 113.60891 * 220.06124 * 21 20 19 41 41 H 1.09004 * 113.62124 * 334.56716 * 22 19 17 42 42 H 1.08997 * 113.61780 * 105.38431 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9779 0.5794 -1.2580 6 6 4.1404 -0.7775 -1.3453 7 1 3.8664 -1.2970 -2.2516 8 6 4.6573 -1.4853 -0.2689 9 7 4.3986 -2.7694 -0.1403 10 14 5.7200 -0.6154 0.9973 11 1 4.8780 -0.1963 2.1464 12 1 6.7811 -1.5395 1.4721 13 1 6.3460 0.5815 0.3799 14 6 4.2464 1.4257 -2.4232 15 6 2.9659 1.5826 -3.2456 16 7 3.2343 2.4295 -4.4105 17 6 2.2462 2.7070 -5.2839 18 8 1.1346 2.2561 -5.1054 19 6 2.5224 3.5777 -6.4826 20 6 1.2931 3.7991 -7.3796 21 6 1.7598 5.2568 -7.5292 22 6 2.4707 5.0835 -6.1751 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8500 0.5582 0.8354 29 1 3.9784 2.1753 0.1028 30 1 4.7601 -3.2641 0.6117 31 1 5.0187 0.9633 -3.0380 32 1 4.5864 2.4061 -2.0896 33 1 2.1936 2.0451 -2.6309 34 1 2.6260 0.6022 -3.5793 35 1 4.1235 2.7899 -4.5536 36 1 3.4140 3.2729 -7.0306 37 1 1.3243 3.2331 -8.3105 38 1 0.3442 3.6963 -6.8531 39 1 2.4426 5.4131 -8.3643 40 1 0.9451 5.9806 -7.5060 41 1 1.8437 5.3332 -5.3192 42 1 3.4528 5.5544 -6.1319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725758366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:47 Heat of formation + Delta-G solvation = -62.151699 kcal Electronic energy + Delta-G solvation = -21441.971296 eV Core-core repulsion = 18229.835127 eV Total energy + Delta-G solvation = -3212.136169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20460 -39.20010 -38.41566 -37.45887 -35.67507 -33.69335 -31.33332 -29.77670 -27.48544 -27.19627 -26.49918 -25.39202 -23.62229 -22.35743 -21.80948 -20.23207 -18.84680 -18.37675 -17.75077 -17.07282 -16.94383 -16.53346 -16.39021 -16.01918 -15.80923 -15.40988 -15.10716 -14.94581 -14.42485 -14.18318 -13.78680 -13.59009 -13.37778 -13.26493 -12.95251 -12.88970 -12.57243 -12.42846 -12.32906 -12.12512 -11.87753 -11.70698 -11.43870 -11.41309 -11.26049 -10.77540 -10.53713 -10.41892 -10.02003 -8.77883 -8.09584 -5.48698 1.37055 1.45838 1.57205 1.64591 2.23467 2.51242 3.09321 3.10697 3.50797 3.57713 3.69939 3.86149 3.94281 4.14615 4.18856 4.27441 4.36127 4.40294 4.48391 4.54536 4.61249 4.62996 4.72086 4.74644 4.81737 4.82246 4.88891 4.97953 5.05853 5.11404 5.13198 5.19058 5.23618 5.47949 5.56893 6.00349 6.25126 6.52181 6.63686 7.04366 7.32628 7.69838 8.07762 9.10916 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023677 B = 0.004518 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.304708 B = 6195.912411 C = 6698.094260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.399 6.399 3 C 0.042 3.958 4 C 0.123 3.877 5 N -0.603 5.603 6 C -0.243 4.243 7 H 0.025 0.975 8 C -0.014 4.014 9 N -0.949 5.949 10 Si 0.944 3.056 11 H -0.280 1.280 12 H -0.312 1.312 13 H -0.245 1.245 14 C 0.142 3.858 15 C 0.114 3.886 16 N -0.711 5.711 17 C 0.510 3.490 18 O -0.598 6.598 19 C -0.135 4.135 20 C -0.131 4.131 21 C -0.128 4.128 22 C -0.117 4.117 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.098 0.902 30 H 0.259 0.741 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.021 0.979 35 H 0.417 0.583 36 H 0.140 0.860 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.195 20.109 -9.548 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.318 6.318 3 C -0.036 4.036 4 C -0.002 4.002 5 N -0.325 5.325 6 C -0.372 4.372 7 H 0.043 0.957 8 C -0.210 4.210 9 N -0.593 5.593 10 Si 0.772 3.228 11 H -0.207 1.207 12 H -0.241 1.241 13 H -0.169 1.169 14 C 0.016 3.984 15 C -0.013 4.013 16 N -0.363 5.363 17 C 0.298 3.702 18 O -0.479 6.479 19 C -0.156 4.156 20 C -0.168 4.168 21 C -0.165 4.165 22 C -0.154 4.154 23 H 0.096 0.904 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.254 0.746 36 H 0.158 0.842 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.800 19.484 -9.320 21.673 hybrid contribution 0.116 -0.503 0.779 0.935 sum -1.684 18.981 -8.540 20.881 Atomic orbital electron populations 1.22771 0.81523 1.02470 0.99931 1.88200 1.19681 1.28693 1.95205 1.23399 0.96363 0.84390 0.99457 1.21579 0.91644 0.98094 0.88863 1.43961 1.76893 1.02986 1.08642 1.18321 1.35674 0.82416 1.00834 0.95706 1.25981 0.99347 0.95361 1.00308 1.70065 1.46344 1.10708 1.32213 0.85854 0.78814 0.78795 0.79332 1.20718 1.24113 1.16870 1.21132 0.93412 0.95477 0.88350 1.21895 1.00290 0.92468 0.86652 1.45925 1.14045 1.51177 1.25120 1.21396 0.83871 0.80273 0.84689 1.90665 1.25330 1.54886 1.77004 1.22969 1.02693 0.96036 0.93944 1.22832 0.96640 0.98336 0.99042 1.22842 1.00725 0.95313 0.97601 1.22833 1.02811 0.91430 0.98375 0.90441 0.92632 0.94690 0.92247 0.93708 0.94048 0.88439 0.93242 0.91977 0.89725 0.93354 0.96084 0.74596 0.84227 0.90464 0.91643 0.87610 0.90620 0.91246 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 11.01 113.37 1.25 2.31 16 2 O -0.40 -18.47 10.31 -148.98 -1.54 -20.01 16 3 C 0.04 1.62 6.27 71.98 0.45 2.07 16 4 C 0.12 4.99 4.90 86.38 0.42 5.41 16 5 N -0.60 -27.32 2.04 -702.02 -1.43 -28.75 16 6 C -0.24 -13.87 9.53 84.03 0.80 -13.07 16 7 H 0.03 1.64 8.06 -2.91 -0.02 1.62 16 8 C -0.01 -0.82 5.26 84.86 0.45 -0.37 16 9 N -0.95 -61.18 13.97 21.65 0.30 -60.88 16 10 Si 0.94 45.68 25.15 68.60 1.73 47.40 16 11 H -0.28 -13.12 6.66 99.48 0.66 -12.46 16 12 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 13 H -0.25 -10.71 7.11 99.48 0.71 -10.01 16 14 C 0.14 4.98 5.83 86.38 0.50 5.49 16 15 C 0.11 4.07 5.95 86.38 0.51 4.58 16 16 N -0.71 -19.04 5.56 -463.06 -2.57 -21.62 16 17 C 0.51 14.87 7.35 87.66 0.64 15.51 16 18 O -0.60 -23.98 15.90 -3.02 -0.05 -24.02 16 19 C -0.14 -2.50 4.15 -11.01 -0.05 -2.55 16 20 C -0.13 -2.48 7.40 31.12 0.23 -2.25 16 21 C -0.13 -1.57 8.10 31.17 0.25 -1.31 16 22 C -0.12 -1.61 7.63 31.17 0.24 -1.37 16 23 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.04 1.65 5.94 -2.39 -0.01 1.63 16 28 H 0.04 1.90 3.50 -2.39 -0.01 1.90 16 29 H 0.10 3.07 7.92 -2.39 -0.02 3.05 16 30 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 31 H 0.06 2.19 8.04 -2.38 -0.02 2.17 16 32 H 0.08 2.29 7.91 -2.39 -0.02 2.27 16 33 H 0.05 1.84 6.00 -2.39 -0.01 1.82 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.42 7.70 8.47 -92.70 -0.79 6.92 16 36 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.63 7.43 -2.39 -0.02 1.61 16 39 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 1.19 8.09 -2.38 -0.02 1.17 16 42 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -79.84 338.29 2.32 -77.52 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.17 Total: 15.90 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 5.71 Total: 14.45 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -3.70 Total: -111.25 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -1.58 Total: -44.03 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.73 Total: 47.40 kcal Total: -79.84 2.32 -77.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725758366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.369 kcal (2) G-P(sol) polarization free energy of solvation -79.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds