Wall clock time and date at job start Mon Mar 30 2020 00:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00379 * 2 1 4 4 C 1.53000 * 109.47403 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47138 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99793 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00122 * 179.97438 * 5 4 3 8 8 C 1.46928 * 120.62899 * 359.72343 * 7 5 4 9 9 C 1.53622 * 108.54487 * 126.36681 * 8 7 5 10 10 C 1.53041 * 109.24514 * 54.85143 * 9 8 7 11 11 N 1.46499 * 109.46202 * 178.48946 * 10 9 8 12 12 C 1.46501 * 119.99775 * 60.07488 * 11 10 9 13 13 C 1.36932 * 120.00091 * 240.07006 * 11 10 9 14 14 H 1.08003 * 120.00033 * 22.99777 * 13 11 10 15 15 C 1.38815 * 119.99849 * 202.99592 * 13 11 10 16 16 N 1.31618 * 120.00061 * 11.63967 * 15 13 11 17 17 Si 1.86800 * 119.99879 * 191.63763 * 15 13 11 18 18 H 1.48507 * 109.47167 * 59.99999 * 17 15 13 19 19 H 1.48496 * 109.47040 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47495 * 300.00139 * 17 15 13 21 21 C 1.53037 * 109.53784 * 298.51785 * 10 9 8 22 22 C 1.46925 * 120.63405 * 179.97438 * 7 5 4 23 23 H 1.09005 * 109.46792 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.46828 * 300.00012 * 1 2 3 25 25 H 1.09003 * 109.46946 * 59.99820 * 1 2 3 26 26 H 1.09006 * 109.47330 * 300.00196 * 3 2 1 27 27 H 1.09004 * 109.47025 * 59.99745 * 3 2 1 28 28 H 1.08999 * 109.46692 * 299.99593 * 4 3 2 29 29 H 1.08996 * 109.47307 * 60.00362 * 4 3 2 30 30 H 1.08995 * 109.58477 * 246.19641 * 8 7 5 31 31 H 1.09005 * 109.58615 * 6.62561 * 8 7 5 32 32 H 1.09001 * 109.63400 * 294.86386 * 9 8 7 33 33 H 1.08995 * 109.43688 * 174.72617 * 9 8 7 34 34 H 1.09003 * 109.45222 * 58.53227 * 10 9 8 35 35 H 1.08999 * 109.47236 * 93.84053 * 12 11 10 36 36 H 1.08995 * 109.46979 * 213.84602 * 12 11 10 37 37 H 1.09001 * 109.47137 * 333.84285 * 12 11 10 38 38 H 0.96998 * 119.99914 * 180.02562 * 16 15 13 39 39 H 1.09009 * 109.49635 * 301.40841 * 21 10 9 40 40 H 1.09006 * 109.52235 * 181.33058 * 21 10 9 41 41 H 1.09001 * 109.58425 * 353.37345 * 22 7 5 42 42 H 1.09001 * 109.58670 * 113.65686 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1485 2.5613 0.0000 6 8 3.4356 3.5424 0.0004 7 7 5.4889 2.7021 0.0001 8 6 6.3655 1.5230 0.0057 9 6 7.3507 1.6411 -1.1671 10 6 8.0928 2.9760 -1.0701 11 7 9.0595 3.0778 -2.1661 12 6 8.5987 3.0306 -3.5560 13 6 10.3937 3.2173 -1.8915 14 1 10.7862 2.8904 -0.9399 15 6 11.2418 3.7788 -2.8362 16 7 10.7416 4.3831 -3.8930 17 14 13.0929 3.6769 -2.6073 18 1 13.5075 2.2518 -2.5550 19 1 13.7701 4.3473 -3.7462 20 1 13.4728 4.3497 -1.3392 21 6 7.0894 4.1275 -1.1665 22 6 6.1013 4.0377 0.0002 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.6887 1.8464 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 3.8574 0.6435 0.8892 29 1 3.8568 0.6438 -0.8908 30 1 6.9156 1.4812 0.9457 31 1 5.7649 0.6206 -0.1092 32 1 6.8052 1.5958 -2.1097 33 1 8.0682 0.8219 -1.1219 34 1 8.6180 3.0309 -0.1165 35 1 8.4428 4.0454 -3.9218 36 1 9.3493 2.5340 -4.1708 37 1 7.6612 2.4770 -3.6093 38 1 11.3342 4.7751 -4.5533 39 1 6.5462 4.0588 -2.1091 40 1 7.6206 5.0783 -1.1211 41 1 5.3263 4.7950 -0.1184 42 1 6.6281 4.1981 0.9408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755525784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:40 Heat of formation + Delta-G solvation = -60.976466 kcal Electronic energy + Delta-G solvation = -21403.143158 eV Core-core repulsion = 18191.057950 eV Total energy + Delta-G solvation = -3212.085207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.13592 -38.12366 -37.39712 -35.06555 -32.56626 -31.84322 -30.51092 -29.67165 -26.88327 -26.00189 -25.06507 -23.72025 -22.68944 -21.81159 -19.72918 -18.47874 -17.41604 -16.76272 -16.46124 -16.17678 -15.55980 -15.15208 -15.03388 -14.87082 -13.94785 -13.74334 -13.69470 -13.35614 -13.11636 -12.81854 -12.45590 -12.25449 -12.01714 -11.69781 -11.61725 -11.44177 -11.33550 -10.93383 -10.85812 -10.77245 -10.39447 -10.26087 -10.13880 -9.89312 -9.85508 -9.75044 -9.57169 -8.57042 -8.46346 -6.74942 -5.71994 -3.18589 2.65891 2.93025 3.38048 3.43691 3.44235 3.68349 4.47674 4.58617 4.83227 4.85417 5.05219 5.10712 5.14769 5.24083 5.31673 5.37115 5.40681 5.43665 5.50096 5.60134 5.63814 5.65838 5.78135 5.89809 6.03255 6.15692 6.25382 6.37287 6.53277 6.61475 6.79823 6.89718 6.97910 7.00854 7.39968 7.50683 7.73857 7.80605 8.20966 8.40529 9.24172 9.87620 10.37209 11.32755 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.042799 B = 0.003533 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.062073 B = 7924.474015 C = 8040.318461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.077 3.923 4 C -0.139 4.139 5 C 0.518 3.482 6 O -0.553 6.553 7 N -0.604 5.604 8 C 0.107 3.893 9 C -0.148 4.148 10 C 0.179 3.821 11 N -0.596 5.596 12 C 0.165 3.835 13 C -0.256 4.256 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.908 5.908 17 Si 0.905 3.095 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.283 1.283 21 C -0.144 4.144 22 C 0.113 3.887 23 H 0.085 0.915 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.027 0.973 36 H 0.042 0.958 37 H -0.003 1.003 38 H 0.253 0.747 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.042 -7.734 8.095 18.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C 0.000 4.000 4 C -0.179 4.179 5 C 0.306 3.694 6 O -0.432 6.432 7 N -0.337 5.337 8 C -0.016 4.016 9 C -0.188 4.188 10 C 0.071 3.929 11 N -0.318 5.318 12 C 0.020 3.980 13 C -0.385 4.385 14 H 0.085 0.915 15 C -0.197 4.197 16 N -0.553 5.553 17 Si 0.735 3.265 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.210 1.210 21 C -0.185 4.185 22 C -0.009 4.009 23 H 0.104 0.896 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.015 0.985 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.170 -7.288 7.918 18.599 hybrid contribution 0.958 0.227 -0.071 0.988 sum -14.212 -7.061 7.846 17.703 Atomic orbital electron populations 1.22722 0.80742 1.02635 1.00171 1.87800 1.19951 1.28186 1.95566 1.22177 0.92100 0.84025 1.01710 1.21498 0.95144 0.95709 1.05555 1.20315 0.82131 0.90853 0.76075 1.90679 1.60616 1.40879 1.51022 1.48167 1.05112 1.08280 1.72116 1.21957 0.92693 0.87083 0.99870 1.22561 0.97896 1.01213 0.97143 1.20282 0.89309 0.90579 0.92774 1.43945 1.02524 1.84968 1.00329 1.20733 0.93972 0.98346 0.84943 1.19178 0.83171 1.34163 1.02028 0.91499 1.25037 0.98255 0.98136 0.98230 1.70057 1.33388 1.39149 1.12678 0.86335 0.85474 0.77631 0.77060 1.21123 1.21683 1.20974 1.22494 0.97084 1.01787 0.97093 1.21699 0.96565 0.83420 0.99239 0.89612 0.94026 0.93966 0.92382 0.92467 0.88141 0.87940 0.91195 0.90161 0.91879 0.90717 0.91924 0.95512 0.93928 0.98483 0.93721 0.92258 0.90612 0.89673 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.40 -4.35 10.70 -35.23 -0.38 -4.73 16 3 C 0.08 0.86 5.23 37.16 0.19 1.05 16 4 C -0.14 -1.52 4.42 -27.88 -0.12 -1.64 16 5 C 0.52 7.36 7.70 -10.98 -0.08 7.27 16 6 O -0.55 -9.61 15.40 5.56 0.09 -9.52 16 7 N -0.60 -8.48 2.97 -172.53 -0.51 -8.99 16 8 C 0.11 1.31 6.37 -3.49 -0.02 1.29 16 9 C -0.15 -2.32 5.34 -26.39 -0.14 -2.46 16 10 C 0.18 3.45 2.55 -67.89 -0.17 3.27 16 11 N -0.60 -14.46 2.81 -173.44 -0.49 -14.95 16 12 C 0.16 4.01 8.03 59.85 0.48 4.49 16 13 C -0.26 -6.86 9.59 -15.06 -0.14 -7.01 16 14 H 0.07 1.74 7.82 -52.48 -0.41 1.33 16 15 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 16 N -0.91 -26.31 10.64 55.49 0.59 -25.72 16 17 Si 0.90 21.62 29.57 -169.99 -5.03 16.59 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.14 -2.60 5.34 -26.63 -0.14 -2.75 16 22 C 0.11 1.73 6.43 -3.73 -0.02 1.70 16 23 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.10 0.93 7.93 -51.93 -0.41 0.51 16 29 H 0.10 1.04 7.70 -51.93 -0.40 0.64 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.78 5.93 -51.93 -0.31 0.48 16 32 H 0.06 1.05 6.72 -51.93 -0.35 0.70 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.21 7.86 -51.93 -0.41 0.80 16 35 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 36 H 0.04 1.12 7.22 -51.93 -0.37 0.75 16 37 H 0.00 -0.07 6.46 -51.93 -0.34 -0.41 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.06 1.15 7.72 -51.92 -0.40 0.74 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 41 H 0.08 1.36 7.01 -51.93 -0.36 1.00 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -31.35 331.82 -6.97 -38.31 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -7.08 Total: -2.55 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 0.84 Total: 6.56 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.41 Total: -49.66 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.29 Total: -14.26 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.35 -6.97 -38.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755525784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.666 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds