Wall clock time and date at job start Mon Mar 30 2020 00:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29380 * 1 3 3 Si 1.86799 * 119.99770 * 2 1 4 4 H 1.48505 * 109.47133 * 269.99989 * 3 2 1 5 5 H 1.48496 * 109.47252 * 30.00187 * 3 2 1 6 6 H 1.48501 * 109.47192 * 150.00322 * 3 2 1 7 7 C 1.46579 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99669 * 179.97438 * 7 2 1 9 9 O 1.22518 * 120.00143 * 359.97438 * 7 2 1 10 10 C 1.35059 * 117.00283 * 180.02562 * 9 7 2 11 11 O 1.21449 * 119.99627 * 0.26762 * 10 9 7 12 12 C 1.47556 * 120.00302 * 179.97438 * 10 9 7 13 13 C 1.39734 * 120.16462 * 359.72131 * 12 10 9 14 14 C 1.37865 * 119.85483 * 179.79098 * 13 12 10 15 15 N 1.48013 * 119.90229 * 180.22967 * 14 13 12 16 16 O 1.31699 * 119.99618 * 180.23674 * 15 14 13 17 17 O 1.31692 * 120.00165 * 0.23189 * 15 14 13 18 18 C 1.38452 * 120.19312 * 0.46566 * 14 13 12 19 19 C 1.38287 * 120.33671 * 359.78653 * 18 14 13 20 20 C 1.38130 * 120.14319 * 359.97438 * 19 18 14 21 21 Cl 1.73596 * 120.10254 * 179.97438 * 20 19 18 22 22 H 0.96996 * 120.00060 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.07510 * 359.97438 * 13 12 10 24 24 H 1.07993 * 119.83321 * 179.76651 * 18 14 13 25 25 H 1.07998 * 119.92766 * 179.97438 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2938 0.0000 0.0000 3 14 2.2277 1.6178 0.0000 4 1 2.4752 2.0465 -1.4001 5 1 1.4252 2.6526 0.7000 6 1 3.5253 1.4402 0.7000 7 6 2.0267 -1.2694 -0.0006 8 1 3.1067 -1.2694 -0.0010 9 8 1.4141 -2.3305 -0.0006 10 6 2.1497 -3.4632 -0.0006 11 8 3.3625 -3.3996 0.0043 12 6 1.4798 -4.7779 0.0000 13 6 0.0846 -4.8551 0.0064 14 6 -0.5346 -6.0869 0.0026 15 7 -2.0124 -6.1698 0.0042 16 8 -2.6059 -7.3455 0.0052 17 8 -2.7338 -5.0680 0.0047 18 6 0.2218 -7.2465 0.0021 19 6 1.6030 -7.1794 0.0010 20 6 2.2379 -5.9527 -0.0001 21 17 3.9719 -5.8697 -0.0008 22 1 -0.4850 0.8400 0.0004 23 1 -0.5074 -3.9518 0.0114 24 1 -0.2693 -8.2083 0.0028 25 1 2.1866 -8.0881 0.0010 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003329923.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:04 Heat of formation + Delta-G solvation = -13.375183 kcal Electronic energy + Delta-G solvation = -17751.976928 eV Core-core repulsion = 14341.613992 eV Total energy + Delta-G solvation = -3410.362936 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.013 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.32604 -41.23017 -39.57315 -37.72148 -37.48702 -35.69007 -34.77256 -33.03460 -32.82800 -27.99978 -27.79460 -25.35451 -23.79746 -22.40893 -20.39747 -20.20188 -19.29575 -18.46810 -18.00030 -17.30831 -17.00914 -16.84459 -16.75511 -16.18787 -15.53900 -14.87838 -14.76017 -14.01155 -13.93281 -13.31069 -13.27941 -12.90752 -12.68261 -12.58953 -12.41422 -12.32096 -12.16168 -11.96761 -11.89532 -10.95774 -10.67446 -10.65862 -10.48248 -8.89268 -6.02591 -1.98954 -0.75079 -0.23460 -0.13922 0.80155 1.17227 1.30888 1.46587 1.55085 2.00838 2.15014 2.42533 2.87955 3.11949 3.22462 3.42423 3.65417 3.97617 4.33281 4.35179 4.46959 4.54118 4.73741 4.98419 5.05089 5.48485 5.63005 6.47431 6.78637 7.92058 8.32646 Molecular weight = 271.01amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.006760 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.381944 B = 4140.753666 C = 5800.291447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.007 3.993 3 Si 1.020 2.980 4 H -0.255 1.255 5 H -0.252 1.252 6 H -0.260 1.260 7 C -0.422 4.422 8 H 0.081 0.919 9 O -0.161 6.161 10 C 0.334 3.666 11 O -0.566 6.566 12 C -0.081 4.081 13 C -0.020 4.020 14 C -0.017 4.017 15 N -0.014 5.014 16 O -0.116 6.116 17 O -0.247 6.247 18 C -0.009 4.009 19 C -0.088 4.088 20 C 0.042 3.958 21 Cl -0.010 7.010 22 H 0.301 0.699 23 H 0.144 0.856 24 H 0.209 0.791 25 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 -12.807 -0.010 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.205 4.205 3 Si 0.837 3.163 4 H -0.179 1.179 5 H -0.176 1.176 6 H -0.184 1.184 7 C -0.499 4.499 8 H 0.099 0.901 9 O -0.063 6.063 10 C 0.190 3.810 11 O -0.470 6.470 12 C -0.084 4.084 13 C -0.040 4.040 14 C -0.103 4.103 15 N 0.464 4.536 16 O -0.329 6.329 17 O -0.421 6.421 18 C -0.029 4.029 19 C -0.106 4.106 20 C 0.013 3.987 21 Cl 0.020 6.980 22 H 0.113 0.887 23 H 0.162 0.838 24 H 0.226 0.774 25 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.102 -12.369 -0.004 12.752 hybrid contribution -0.166 1.187 -0.005 1.199 sum 2.935 -11.181 -0.009 11.560 Atomic orbital electron populations 1.68955 1.09483 1.32196 1.35958 1.28234 0.96165 1.02048 0.94094 0.84598 0.78219 0.73360 0.80134 1.17949 1.17572 1.18423 1.20975 0.93623 0.82946 1.52357 0.90114 1.80510 1.42239 1.14359 1.69190 1.20723 0.86225 0.84933 0.89112 1.90634 1.14181 1.86248 1.55965 1.18811 0.91576 0.91492 1.06570 1.21094 0.93575 0.97867 0.91514 1.20414 0.76189 0.97008 1.16713 1.50581 1.05107 1.02443 0.95451 1.96177 1.75383 1.10081 1.51280 1.96387 1.64986 1.20294 1.60385 1.21631 0.92916 0.98047 0.90287 1.21519 0.92880 0.96878 0.99372 1.21682 0.87750 0.93590 0.95653 1.98442 1.05759 1.98603 1.95163 0.88672 0.83815 0.77396 0.76846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.86 13.66 23.21 0.32 -44.55 15 2 C 0.01 0.37 5.69 87.23 0.50 0.87 15 3 Si 1.02 39.35 29.64 68.60 2.03 41.39 15 4 H -0.26 -9.32 7.11 99.48 0.71 -8.62 15 5 H -0.25 -8.81 7.11 99.48 0.71 -8.11 15 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 7 C -0.42 -24.20 9.62 70.00 0.67 -23.53 15 8 H 0.08 4.77 6.70 -2.91 -0.02 4.75 15 9 O -0.16 -9.14 8.54 82.15 0.70 -8.43 15 10 C 0.33 16.83 7.76 70.28 0.55 17.38 15 11 O -0.57 -29.92 13.09 19.98 0.26 -29.66 15 12 C -0.08 -3.15 5.88 -20.08 -0.12 -3.27 15 13 C -0.02 -0.74 9.14 22.54 0.21 -0.53 15 14 C -0.02 -0.50 6.88 36.34 0.25 -0.25 15 15 N -0.01 -0.47 4.98 -46.55 -0.23 -0.70 15 16 O -0.12 -3.39 19.14 3.52 0.07 -3.33 15 17 O -0.25 -10.00 19.14 3.53 0.07 -9.94 15 18 C -0.01 -0.18 9.57 22.33 0.21 0.04 15 19 C -0.09 -1.57 9.82 22.26 0.22 -1.35 15 20 C 0.04 1.23 6.36 22.62 0.14 1.37 15 21 Cl -0.01 -0.30 26.03 -2.72 -0.07 -0.37 15 22 H 0.30 14.27 8.26 -92.71 -0.77 13.50 15 23 H 0.14 6.19 7.12 -2.91 -0.02 6.17 15 24 H 0.21 2.13 7.56 -2.91 -0.02 2.11 15 25 H 0.21 1.66 8.06 -2.91 -0.02 1.64 15 Total: -1.00 -69.78 263.96 7.04 -62.74 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: 1.27 Total: 2.13 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 2.63 Total: -9.28 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.08 Total: -45.25 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: 1.10 Total: -51.36 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.39 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.07 Total: -0.37 kcal Total: -69.78 7.04 -62.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003329923.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.365 kcal (2) G-P(sol) polarization free energy of solvation -69.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds