Wall clock time and date at job start Mon Mar 30 2020 01:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86800 * 119.99891 * 2 1 4 4 H 1.48494 * 109.47252 * 240.00077 * 3 2 1 5 5 H 1.48498 * 109.47450 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46535 * 120.00312 * 3 2 1 7 7 C 1.40143 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99946 * 180.02562 * 7 2 1 9 9 C 1.41707 * 119.99595 * 359.97438 * 7 2 1 10 10 O 1.21787 * 120.00357 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99742 * 180.02562 * 9 7 2 12 12 C 1.39439 * 120.00186 * 185.28212 * 11 9 7 13 13 C 1.39182 * 120.01282 * 33.47707 * 12 11 9 14 14 C 1.38017 * 120.05740 * 180.02562 * 13 12 11 15 15 C 1.38728 * 120.12863 * 0.27010 * 14 13 12 16 16 C 1.39512 * 119.96469 * 359.46413 * 15 14 13 17 17 C 1.38349 * 119.90890 * 0.53247 * 16 15 14 18 18 O 1.36487 * 108.61236 * 180.32202 * 16 15 14 19 19 C 1.44333 * 105.36949 * 342.32091 * 18 16 15 20 20 F 1.39906 * 111.01252 * 268.97531 * 19 18 16 21 21 F 1.39897 * 110.40650 * 146.07164 * 19 18 16 22 22 O 1.36509 * 131.45263 * 179.73441 * 15 14 13 23 23 H 0.97006 * 119.99964 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99653 * 5.27304 * 11 9 7 25 25 H 1.07998 * 119.96750 * 0.02562 * 13 12 11 26 26 H 1.07995 * 119.93537 * 180.02562 * 14 13 12 27 27 H 1.07997 * 120.01817 * 179.70745 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6965 -1.2124 5 1 1.2753 2.7465 0.0006 6 1 3.0940 1.6963 1.2125 7 6 2.0070 -1.2137 -0.0005 8 1 3.0869 -1.2137 -0.0001 9 6 1.2984 -2.4408 -0.0005 10 8 0.0805 -2.4408 -0.0005 11 7 1.9723 -3.6081 -0.0005 12 6 1.2795 -4.8131 -0.1117 13 6 0.1179 -4.8804 -0.8755 14 6 -0.5688 -6.0726 -0.9857 15 6 -0.1068 -7.2053 -0.3315 16 6 1.0603 -7.1428 0.4304 17 6 1.7487 -5.9478 0.5409 18 8 1.3020 -8.3776 0.9592 19 6 0.0503 -9.0890 0.8574 20 9 -0.7200 -8.9169 2.0126 21 9 0.2798 -10.4484 0.6196 22 8 -0.5947 -8.4790 -0.2760 23 1 -0.4850 0.8401 0.0004 24 1 2.9392 -3.6098 0.0767 25 1 -0.2463 -3.9991 -1.3822 26 1 -1.4696 -6.1227 -1.5792 27 1 2.6497 -5.8963 1.1341 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019424557.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:45 Heat of formation + Delta-G solvation = -173.248242 kcal Electronic energy + Delta-G solvation = -20079.380576 eV Core-core repulsion = 16246.121438 eV Total energy + Delta-G solvation = -3833.259138 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.42467 -47.88206 -41.93912 -38.95213 -36.76515 -36.56167 -33.43707 -32.55895 -30.25611 -28.73295 -26.56043 -25.00060 -23.18212 -22.70426 -20.65267 -19.15548 -18.73748 -18.48994 -17.69847 -17.19709 -15.97873 -15.76186 -15.22579 -14.90286 -14.63153 -14.61500 -14.16042 -14.10396 -13.87771 -13.74117 -13.72134 -13.06347 -12.86282 -12.77902 -12.36390 -11.59099 -11.42076 -11.12666 -11.06042 -10.76881 -10.47382 -9.39020 -9.00663 -8.61070 -7.93389 -7.25485 -6.51859 -5.05993 1.32081 1.42308 1.80407 2.39976 2.99393 3.05823 3.07342 3.80427 3.85880 3.97227 4.10955 4.31420 4.39906 4.52769 4.95825 5.20951 5.51249 5.52679 5.64692 5.94876 6.14064 6.22801 6.63948 6.73129 7.01813 7.11347 7.63531 7.82224 7.93740 8.66082 9.06041 10.21604 10.40345 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.055579 B = 0.003978 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.670285 B = 7037.116751 C = 7210.517502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.087 3.913 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.534 4.534 8 H 0.072 0.928 9 C 0.540 3.460 10 O -0.564 6.564 11 N -0.693 5.693 12 C 0.221 3.779 13 C -0.112 4.112 14 C -0.056 4.056 15 C -0.034 4.034 16 C 0.046 3.954 17 C -0.145 4.145 18 O -0.292 6.292 19 C 0.567 3.433 20 F -0.159 7.159 21 F -0.126 7.126 22 O -0.290 6.290 23 H 0.276 0.724 24 H 0.397 0.603 25 H 0.161 0.839 26 H 0.138 0.862 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 -10.565 -0.418 10.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.090 0.910 9 C 0.350 3.650 10 O -0.447 6.447 11 N -0.336 5.336 12 C 0.120 3.880 13 C -0.133 4.133 14 C -0.075 4.075 15 C -0.078 4.078 16 C 0.002 3.998 17 C -0.167 4.167 18 O -0.212 6.212 19 C 0.458 3.542 20 F -0.141 7.141 21 F -0.107 7.107 22 O -0.210 6.210 23 H 0.087 0.913 24 H 0.231 0.769 25 H 0.178 0.822 26 H 0.156 0.844 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.523 -10.558 -0.433 10.676 hybrid contribution 0.877 0.240 0.394 0.991 sum 2.401 -10.319 -0.039 10.594 Atomic orbital electron populations 1.69981 1.07316 1.28318 1.31459 1.25774 0.94705 1.00800 0.92378 0.86292 0.79852 0.80175 0.79779 1.18951 1.20264 1.18991 1.20001 0.94480 0.89803 1.52625 0.90963 1.17100 0.87667 0.81836 0.78353 1.90678 1.13430 1.85679 1.54930 1.44328 1.09891 1.03848 1.75565 1.17573 0.93113 0.86059 0.91300 1.21311 0.95761 0.97215 0.99058 1.19983 1.00278 0.87673 0.99578 1.19448 0.96440 0.84481 1.07441 1.19102 0.96578 0.84919 0.99209 1.19708 1.04184 0.88189 1.04657 1.87613 1.29483 1.24360 1.79739 1.21985 0.77321 0.77835 0.77075 1.93251 1.75190 1.95213 1.50419 1.93200 1.93956 1.29351 1.94203 1.87533 1.65030 1.24362 1.44125 0.91348 0.76931 0.82162 0.84406 0.84438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.21 11.73 55.56 0.65 -19.55 15 2 C 0.09 2.20 5.50 -17.35 -0.10 2.10 15 3 Si 0.92 18.22 29.56 -169.99 -5.02 13.19 15 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 5 H -0.28 -5.44 7.11 56.52 0.40 -5.03 15 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 7 C -0.53 -13.48 9.31 -37.54 -0.35 -13.83 15 8 H 0.07 1.64 7.85 -52.49 -0.41 1.22 15 9 C 0.54 13.74 7.30 -14.93 -0.11 13.63 15 10 O -0.56 -16.23 12.56 5.11 0.06 -16.16 15 11 N -0.69 -14.01 5.31 -12.43 -0.07 -14.07 15 12 C 0.22 4.18 6.27 -83.75 -0.53 3.66 15 13 C -0.11 -2.13 8.64 -39.31 -0.34 -2.47 15 14 C -0.06 -0.93 10.05 -39.48 -0.40 -1.32 15 15 C -0.03 -0.58 7.16 -38.93 -0.28 -0.86 15 16 C 0.05 0.78 7.14 -39.07 -0.28 0.50 15 17 C -0.14 -2.41 9.98 -39.24 -0.39 -2.81 15 18 O -0.29 -4.75 11.37 -45.64 -0.52 -5.27 15 19 C 0.57 8.70 3.69 101.05 0.37 9.07 15 20 F -0.16 -2.43 17.58 2.25 0.04 -2.39 15 21 F -0.13 -1.73 17.56 2.25 0.04 -1.69 15 22 O -0.29 -4.75 11.34 -45.71 -0.52 -5.26 15 23 H 0.28 6.78 8.29 -40.82 -0.34 6.44 15 24 H 0.40 6.68 8.77 -40.82 -0.36 6.33 15 25 H 0.16 3.39 6.41 -52.49 -0.34 3.06 15 26 H 0.14 1.92 8.06 -52.49 -0.42 1.50 15 27 H 0.14 1.96 8.06 -52.49 -0.42 1.53 15 LS Contribution 260.82 15.07 3.93 3.93 Total: -1.00 -29.19 260.82 -4.88 -34.07 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -1.09 Total: 5.54 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -2.39 Total: 7.67 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.59 Total: -33.63 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.97 Total: -26.69 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.08 Total: -4.08 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.19 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.19 -4.88 -34.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019424557.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.178 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds