Wall clock time and date at job start Mon Mar 30 2020 00:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86800 * 120.00122 * 2 1 4 4 H 1.48501 * 109.46972 * 239.99981 * 3 2 1 5 5 H 1.48503 * 109.47172 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47241 * 119.99590 * 3 2 1 7 7 C 1.38798 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00425 * 180.02562 * 7 2 1 9 9 S 1.76209 * 119.99785 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99636 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46924 * 180.02562 * 10 9 7 12 12 O 1.21295 * 119.99489 * 0.02562 * 11 10 9 13 13 N 1.34769 * 119.99974 * 180.02562 * 11 10 9 14 14 C 1.39985 * 119.99929 * 185.52765 * 13 11 10 15 15 C 1.38855 * 120.07404 * 24.81827 * 14 13 11 16 16 C 1.38112 * 119.94300 * 179.97438 * 15 14 13 17 17 C 1.38304 * 120.09178 * 359.97438 * 16 15 14 18 18 C 1.38258 * 120.14728 * 0.02562 * 17 16 15 19 19 C 1.38232 * 120.06104 * 0.02562 * 18 17 16 20 20 Cl 1.73591 * 120.04825 * 179.97438 * 19 18 17 21 21 H 0.96996 * 119.99563 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47442 * 60.00572 * 10 9 7 23 23 H 1.08997 * 109.47499 * 300.00003 * 10 9 7 24 24 H 0.97000 * 120.00285 * 5.52359 * 13 11 10 25 25 H 1.08000 * 120.03004 * 359.97438 * 15 14 13 26 26 H 1.07998 * 119.95821 * 180.02562 * 16 15 14 27 27 H 1.07991 * 119.92386 * 180.02562 * 17 16 15 28 28 H 1.07998 * 119.96678 * 179.72372 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9874 -5.3028 0.0036 12 8 0.7909 -5.5023 0.0029 13 7 2.8441 -6.3431 0.0049 14 6 2.3576 -7.6505 -0.1113 15 6 1.1343 -7.8859 -0.7246 16 6 0.6572 -9.1770 -0.8382 17 6 1.3964 -10.2356 -0.3425 18 6 2.6149 -10.0056 0.2688 19 6 3.0979 -8.7157 0.3869 20 17 4.6276 -8.4273 1.1551 21 1 -0.4849 0.8401 -0.0004 22 1 3.1244 -3.7306 0.8928 23 1 3.1245 -3.7321 -0.8871 24 1 3.7978 -6.1859 0.0863 25 1 0.5564 -7.0600 -1.1124 26 1 -0.2941 -9.3603 -1.3156 27 1 1.0209 -11.2440 -0.4332 28 1 3.1877 -10.8339 0.6588 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040088043.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:46 Heat of formation + Delta-G solvation = -37.506268 kcal Electronic energy + Delta-G solvation = -15306.541057 eV Core-core repulsion = 12473.717684 eV Total energy + Delta-G solvation = -2832.823373 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 271.017 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.68621 -39.55374 -37.48643 -35.94863 -34.59960 -32.04055 -31.65569 -29.58235 -27.67086 -24.35958 -23.51317 -21.70692 -19.95021 -19.00496 -18.09308 -17.48246 -16.89026 -16.79433 -16.18065 -15.86576 -15.39998 -14.97524 -14.76058 -14.64824 -14.45372 -13.71493 -13.21187 -13.05712 -12.88024 -12.68344 -12.63618 -12.44657 -12.02415 -11.78972 -11.68637 -11.14175 -10.93278 -10.33612 -9.82477 -9.17579 -8.69160 -8.36350 -6.14795 0.06103 0.25330 1.02854 1.20100 1.42728 1.43407 1.45340 1.53881 2.03212 2.25065 2.69604 2.98127 3.23188 3.66339 3.79601 4.08628 4.20345 4.32995 4.35880 4.39626 4.45588 4.84508 5.07302 5.22148 5.35174 5.40778 5.50386 5.87616 6.17518 6.18925 6.92478 7.05198 8.72499 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.036842 B = 0.003976 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.826454 B = 7040.561867 C = 7722.128917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.084 0.916 9 S -0.139 6.139 10 C -0.132 4.132 11 C 0.538 3.462 12 O -0.530 6.530 13 N -0.658 5.658 14 C 0.144 3.856 15 C -0.148 4.148 16 C -0.093 4.093 17 C -0.121 4.121 18 C -0.087 4.087 19 C -0.080 4.080 20 Cl -0.062 7.062 21 H 0.272 0.728 22 H 0.114 0.886 23 H 0.116 0.884 24 H 0.423 0.577 25 H 0.128 0.872 26 H 0.151 0.849 27 H 0.168 0.832 28 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.151 -20.272 -0.525 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.697 4.697 8 H 0.102 0.898 9 S 0.088 5.912 10 C -0.283 4.283 11 C 0.325 3.675 12 O -0.405 6.405 13 N -0.305 5.305 14 C 0.048 3.952 15 C -0.169 4.169 16 C -0.112 4.112 17 C -0.140 4.140 18 C -0.106 4.106 19 C -0.109 4.109 20 Cl -0.034 7.034 21 H 0.081 0.919 22 H 0.132 0.868 23 H 0.134 0.866 24 H 0.262 0.738 25 H 0.146 0.854 26 H 0.169 0.831 27 H 0.186 0.814 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.178 -20.388 -0.463 21.620 hybrid contribution 2.088 1.635 0.130 2.655 sum 9.266 -18.753 -0.333 20.920 Atomic orbital electron populations 1.70165 1.07916 1.28745 1.47813 1.26116 0.95977 1.03287 0.93684 0.85011 0.77819 0.75736 0.79486 1.18654 1.20378 1.18728 1.23176 0.95430 0.91925 1.59126 0.89795 1.85531 1.09624 0.98937 1.97085 1.23388 1.04228 0.93314 1.07377 1.20269 0.86139 0.86508 0.74547 1.90672 1.16792 1.85512 1.47568 1.43436 1.11487 1.03406 1.72146 1.17779 0.95486 0.83403 0.98526 1.21470 0.95594 0.99438 1.00379 1.21483 1.00676 0.91051 0.97966 1.21499 0.93679 1.00685 0.98102 1.21262 0.96770 0.94175 0.98390 1.20808 0.90780 0.94663 1.04656 1.98358 1.28654 1.96456 1.79902 0.91929 0.86755 0.86570 0.73787 0.85424 0.83139 0.81432 0.81944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.30 13.22 21.65 0.29 -55.01 15 2 C 0.01 0.81 5.49 84.86 0.47 1.28 15 3 Si 1.00 43.15 29.55 68.60 2.03 45.17 15 4 H -0.26 -10.74 7.11 99.48 0.71 -10.04 15 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 15 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15 7 C -0.55 -30.88 9.50 67.95 0.65 -30.23 15 8 H 0.08 4.37 7.80 -2.91 -0.02 4.34 15 9 S -0.14 -7.54 20.57 -56.49 -1.16 -8.70 15 10 C -0.13 -5.14 6.16 71.24 0.44 -4.70 15 11 C 0.54 19.85 7.65 87.66 0.67 20.52 15 12 O -0.53 -23.52 13.03 -3.08 -0.04 -23.56 15 13 N -0.66 -18.77 5.19 -303.40 -1.58 -20.35 15 14 C 0.14 3.96 6.43 38.16 0.25 4.20 15 15 C -0.15 -4.22 8.72 22.39 0.20 -4.02 15 16 C -0.09 -1.91 10.04 22.26 0.22 -1.69 15 17 C -0.12 -1.86 10.04 22.29 0.22 -1.64 15 18 C -0.09 -1.46 9.82 22.27 0.22 -1.24 15 19 C -0.08 -1.76 6.34 22.44 0.14 -1.62 15 20 Cl -0.06 -1.23 27.78 -2.72 -0.08 -1.30 15 21 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 22 H 0.11 4.00 8.14 -2.40 -0.02 3.98 15 23 H 0.12 4.04 8.14 -2.40 -0.02 4.02 15 24 H 0.42 9.68 7.76 -92.71 -0.72 8.96 15 25 H 0.13 4.41 5.79 -2.91 -0.02 4.39 15 26 H 0.15 2.39 8.06 -2.91 -0.02 2.37 15 27 H 0.17 1.34 8.06 -2.92 -0.02 1.32 15 28 H 0.16 1.78 8.06 -2.91 -0.02 1.75 15 Total: -1.00 -71.75 280.99 3.41 -68.33 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.48 Total: 14.55 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 3.47 Total: -19.14 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.29 Total: -75.36 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.04 Total: -23.56 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -7.54 SS G_CDS: -1.16 Total: -8.70 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.30 kcal Total: -71.75 3.41 -68.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040088043.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.829 kcal (2) G-P(sol) polarization free energy of solvation -71.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds