Wall clock time and date at job start Mon Mar 30 2020 01:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99947 * 2 1 4 4 H 1.48500 * 109.47407 * 270.00483 * 3 2 1 5 5 H 1.48510 * 109.47234 * 30.00748 * 3 2 1 6 6 H 1.48507 * 109.47204 * 150.00245 * 3 2 1 7 7 C 1.37874 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00124 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99811 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47220 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00293 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99959 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99962 * 180.02562 * 11 10 9 14 14 O 1.45210 * 109.47070 * 180.02562 * 13 11 10 15 15 C 1.34718 * 117.00052 * 180.02562 * 14 13 11 16 16 O 1.21493 * 119.99877 * 359.97438 * 15 14 13 17 17 C 1.47626 * 120.00304 * 180.27289 * 15 14 13 18 18 C 1.39393 * 124.12651 * 179.44867 * 17 15 14 19 19 N 1.30082 * 112.13711 * 179.81751 * 18 17 15 20 20 S 1.55911 * 108.77264 * 0.42822 * 19 18 17 21 21 N 1.31543 * 124.12113 * 359.74484 * 17 15 14 22 22 H 0.97002 * 119.99973 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.47122 * 60.00254 * 9 7 2 24 24 H 1.08996 * 109.47237 * 299.99868 * 9 7 2 25 25 H 0.96999 * 119.99859 * 359.97438 * 10 9 7 26 26 H 1.08997 * 109.47704 * 59.99935 * 13 11 10 27 27 H 1.09004 * 109.47282 * 299.99116 * 13 11 10 28 28 H 1.07995 * 123.93061 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7538 -4.8833 -0.0025 12 8 0.5613 -5.1049 -0.0017 13 6 2.7331 -6.0287 -0.0032 14 8 2.0070 -7.2863 -0.0045 15 6 2.7407 -8.4161 -0.0048 16 8 3.9540 -8.3525 -0.0043 17 6 2.0706 -9.7315 -0.0122 18 6 2.7437 -10.9521 -0.0241 19 7 1.9254 -11.9632 -0.0248 20 16 0.4623 -11.4245 -0.0228 21 7 0.7653 -9.8946 -0.0140 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8904 24 1 0.6248 -2.5570 0.8897 25 1 3.1567 -3.4354 -0.0028 26 1 3.3598 -5.9716 0.8867 27 1 3.3596 -5.9706 -0.8933 28 1 3.8195 -11.0472 -0.0294 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047839284.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:13 Heat of formation + Delta-G solvation = -56.887362 kcal Electronic energy + Delta-G solvation = -17240.716273 eV Core-core repulsion = 13998.636059 eV Total energy + Delta-G solvation = -3242.080214 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.55521 -40.14763 -38.67951 -36.51534 -34.27206 -34.02317 -32.42603 -29.55138 -28.02111 -26.63277 -23.99349 -22.53042 -20.94938 -20.00046 -19.84008 -18.24555 -17.45888 -17.00799 -16.72798 -15.97067 -15.76085 -15.40649 -15.09368 -14.57676 -14.29773 -13.17649 -13.07782 -12.70050 -12.59054 -12.01406 -11.84144 -11.81548 -11.60657 -11.39174 -11.03394 -10.94787 -10.93240 -10.80536 -10.35493 -9.68279 -9.45313 -9.20907 -8.79428 -8.00622 -6.20513 -4.28146 -0.01893 0.92056 0.99467 1.15848 2.23069 2.48558 3.15132 3.22637 3.28850 3.31155 3.82263 4.06061 4.31279 4.54353 4.69278 5.00816 5.03603 5.14769 5.17146 5.29885 5.95166 6.03718 7.20418 7.27322 7.38893 7.44598 7.60016 7.90763 8.47758 8.69680 8.94513 9.38310 10.89573 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.057229 B = 0.002957 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.144261 B = 9467.790499 C = 9936.468579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.530 6.530 13 C 0.047 3.953 14 O -0.305 6.305 15 C 0.557 3.443 16 O -0.491 6.491 17 C 0.023 3.977 18 C 0.097 3.903 19 N -0.583 5.583 20 S 0.742 5.258 21 N -0.512 5.512 22 H 0.267 0.733 23 H 0.030 0.970 24 H 0.030 0.970 25 H 0.393 0.607 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.556 -21.673 -0.056 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.282 3.718 12 O -0.407 6.407 13 C -0.030 4.030 14 O -0.217 6.217 15 C 0.395 3.605 16 O -0.378 6.378 17 C -0.150 4.150 18 C -0.097 4.097 19 N -0.423 5.423 20 S 0.783 5.217 21 N -0.363 5.363 22 H 0.076 0.924 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.226 0.774 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.051 -22.665 -0.053 22.870 hybrid contribution 2.630 1.999 -0.002 3.303 sum 5.681 -20.666 -0.055 21.433 Atomic orbital electron populations 1.69977 1.06127 1.27425 1.48631 1.24956 0.94936 0.99509 0.94595 0.86382 0.79590 0.82486 0.78246 1.20431 1.20976 1.19715 1.21205 0.93343 0.90287 1.53578 0.91734 1.19185 0.88158 0.81486 0.98070 1.46354 1.11539 1.05252 1.72493 1.19823 0.89096 0.83939 0.78989 1.90736 1.16236 1.84451 1.49267 1.23024 0.94540 0.80440 1.05001 1.86709 1.39118 1.13446 1.82477 1.19399 0.84518 0.83283 0.73282 1.90903 1.13644 1.87406 1.45832 1.21385 0.87511 0.95046 1.11012 1.23727 1.03288 0.84351 0.98289 1.72263 1.09356 1.36751 1.23965 1.79221 1.09020 0.87525 1.45943 1.72607 1.19890 1.25748 1.18102 0.92362 0.95235 0.95215 0.77397 0.88017 0.88031 0.76515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.74 13.29 55.43 0.74 -25.01 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 15 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 7 C -0.55 -14.51 9.28 -34.44 -0.32 -14.83 15 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 15 9 C 0.25 6.53 5.43 -5.19 -0.03 6.50 15 10 N -0.71 -14.38 5.55 -61.47 -0.34 -14.72 15 11 C 0.50 9.91 7.91 -10.99 -0.09 9.82 15 12 O -0.53 -13.06 16.50 -14.11 -0.23 -13.29 15 13 C 0.05 0.70 5.95 36.01 0.21 0.91 15 14 O -0.30 -4.91 9.72 -47.22 -0.46 -5.37 15 15 C 0.56 7.55 7.96 34.56 0.28 7.82 15 16 O -0.49 -6.68 16.60 -19.26 -0.32 -7.00 15 17 C 0.02 0.27 6.82 -83.73 -0.57 -0.31 15 18 C 0.10 0.87 11.22 -17.86 -0.20 0.67 15 19 N -0.58 -5.24 11.41 19.44 0.22 -5.02 15 20 S 0.74 5.87 23.69 -107.50 -2.55 3.32 15 21 N -0.51 -6.18 11.44 23.19 0.27 -5.91 15 22 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 23 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.39 6.63 8.32 -40.82 -0.34 6.29 15 26 H 0.10 1.24 8.14 -51.93 -0.42 0.82 15 27 H 0.10 1.24 8.14 -51.93 -0.42 0.82 15 28 H 0.22 1.37 8.06 -52.49 -0.42 0.95 15 LS Contribution 283.91 15.07 4.28 4.28 Total: -1.00 -34.35 283.91 -6.22 -40.56 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -1.99 Total: 0.41 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -0.81 Total: 12.24 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.88 Total: -50.66 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -1.01 Total: -25.66 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 5.87 SS G_CDS: -2.55 Total: 3.32 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.35 -6.22 -40.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047839284.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.323 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds